Experiment: Xylan from corncob 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15710 and HMPREF1078_RS15715 are separated by 39 nucleotides HMPREF1078_RS15715 and HMPREF1078_RS20075 are separated by 45 nucleotides HMPREF1078_RS20075 and HMPREF1078_RS15720 are separated by 241 nucleotides
HMPREF1078_RS15710: HMPREF1078_RS15710 - TolC family protein, at 257,695 to 259,077
_RS15710
HMPREF1078_RS15715: HMPREF1078_RS15715 - TetR/AcrR family transcriptional regulator, at 259,117 to 259,536
_RS15715
HMPREF1078_RS20075: HMPREF1078_RS20075 - helix-turn-helix domain containing protein, at 259,582 to 259,707
_RS20075
HMPREF1078_RS15720: HMPREF1078_RS15720 - helix-turn-helix transcriptional regulator, at 259,949 to 260,857
_RS15720
Position (kb) 259
260 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 258.142 kb on + strand, within HMPREF1078_RS15710 at 258.143 kb on - strand, within HMPREF1078_RS15710 at 258.243 kb on + strand, within HMPREF1078_RS15710 at 258.244 kb on - strand, within HMPREF1078_RS15710 at 258.244 kb on - strand, within HMPREF1078_RS15710 at 258.284 kb on - strand, within HMPREF1078_RS15710 at 258.324 kb on + strand, within HMPREF1078_RS15710 at 258.328 kb on + strand, within HMPREF1078_RS15710 at 258.328 kb on + strand, within HMPREF1078_RS15710 at 258.329 kb on - strand, within HMPREF1078_RS15710 at 258.329 kb on - strand, within HMPREF1078_RS15710 at 258.347 kb on - strand, within HMPREF1078_RS15710 at 258.347 kb on - strand, within HMPREF1078_RS15710 at 258.350 kb on - strand, within HMPREF1078_RS15710 at 258.478 kb on - strand, within HMPREF1078_RS15710 at 258.566 kb on + strand, within HMPREF1078_RS15710 at 258.577 kb on + strand, within HMPREF1078_RS15710 at 258.652 kb on + strand, within HMPREF1078_RS15710 at 258.653 kb on - strand, within HMPREF1078_RS15710 at 258.718 kb on - strand, within HMPREF1078_RS15710 at 258.718 kb on - strand, within HMPREF1078_RS15710 at 258.772 kb on + strand, within HMPREF1078_RS15710 at 258.772 kb on + strand, within HMPREF1078_RS15710 at 258.806 kb on + strand, within HMPREF1078_RS15710 at 258.806 kb on + strand, within HMPREF1078_RS15710 at 258.806 kb on + strand, within HMPREF1078_RS15710 at 258.807 kb on - strand, within HMPREF1078_RS15710 at 258.807 kb on - strand, within HMPREF1078_RS15710 at 258.807 kb on - strand, within HMPREF1078_RS15710 at 258.854 kb on - strand, within HMPREF1078_RS15710 at 258.875 kb on + strand, within HMPREF1078_RS15710 at 258.875 kb on + strand, within HMPREF1078_RS15710 at 258.875 kb on + strand, within HMPREF1078_RS15710 at 258.875 kb on + strand, within HMPREF1078_RS15710 at 258.876 kb on - strand, within HMPREF1078_RS15710 at 258.876 kb on - strand, within HMPREF1078_RS15710 at 258.894 kb on - strand, within HMPREF1078_RS15710 at 259.063 kb on + strand at 259.079 kb on + strand at 259.139 kb on + strand at 259.152 kb on - strand at 259.152 kb on - strand at 259.182 kb on + strand, within HMPREF1078_RS15715 at 259.202 kb on + strand, within HMPREF1078_RS15715 at 259.203 kb on + strand, within HMPREF1078_RS15715 at 259.204 kb on - strand, within HMPREF1078_RS15715 at 259.204 kb on - strand, within HMPREF1078_RS15715 at 259.205 kb on + strand, within HMPREF1078_RS15715 at 259.206 kb on - strand, within HMPREF1078_RS15715 at 259.206 kb on - strand, within HMPREF1078_RS15715 at 259.216 kb on - strand, within HMPREF1078_RS15715 at 259.297 kb on + strand, within HMPREF1078_RS15715 at 259.361 kb on - strand, within HMPREF1078_RS15715 at 259.435 kb on + strand, within HMPREF1078_RS15715 at 259.436 kb on + strand, within HMPREF1078_RS15715 at 259.437 kb on - strand, within HMPREF1078_RS15715 at 259.437 kb on - strand, within HMPREF1078_RS15715 at 259.470 kb on + strand, within HMPREF1078_RS15715 at 259.501 kb on + strand at 259.501 kb on + strand at 259.502 kb on - strand at 259.551 kb on + strand at 259.554 kb on + strand at 259.554 kb on + strand at 259.556 kb on + strand at 259.557 kb on - strand at 259.567 kb on + strand at 259.568 kb on - strand at 259.568 kb on - strand at 259.569 kb on + strand at 259.610 kb on + strand, within HMPREF1078_RS20075 at 259.611 kb on - strand, within HMPREF1078_RS20075 at 259.629 kb on + strand, within HMPREF1078_RS20075 at 259.630 kb on - strand, within HMPREF1078_RS20075 at 259.639 kb on - strand, within HMPREF1078_RS20075 at 259.647 kb on + strand, within HMPREF1078_RS20075 at 259.647 kb on + strand, within HMPREF1078_RS20075 at 259.657 kb on - strand, within HMPREF1078_RS20075 at 259.657 kb on - strand, within HMPREF1078_RS20075 at 259.709 kb on - strand at 259.730 kb on + strand at 259.736 kb on - strand at 259.743 kb on - strand at 259.750 kb on - strand at 259.779 kb on - strand at 259.848 kb on - strand at 259.848 kb on - strand at 259.864 kb on + strand at 259.933 kb on + strand at 259.934 kb on - strand at 259.936 kb on + strand at 259.936 kb on + strand at 259.936 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.944 kb on + strand at 259.945 kb on - strand at 259.965 kb on + strand at 259.966 kb on - strand at 259.969 kb on - strand at 259.988 kb on - strand at 259.988 kb on - strand at 259.993 kb on + strand at 259.997 kb on - strand at 260.050 kb on + strand, within HMPREF1078_RS15720 at 260.100 kb on + strand, within HMPREF1078_RS15720 at 260.156 kb on + strand, within HMPREF1078_RS15720 at 260.165 kb on + strand, within HMPREF1078_RS15720 at 260.224 kb on + strand, within HMPREF1078_RS15720 at 260.225 kb on - strand, within HMPREF1078_RS15720 at 260.287 kb on + strand, within HMPREF1078_RS15720 at 260.288 kb on - strand, within HMPREF1078_RS15720 at 260.317 kb on + strand, within HMPREF1078_RS15720 at 260.320 kb on - strand, within HMPREF1078_RS15720 at 260.328 kb on - strand, within HMPREF1078_RS15720 at 260.329 kb on + strand, within HMPREF1078_RS15720 at 260.354 kb on - strand, within HMPREF1078_RS15720 at 260.405 kb on - strand, within HMPREF1078_RS15720 at 260.406 kb on + strand, within HMPREF1078_RS15720 at 260.406 kb on + strand, within HMPREF1078_RS15720 at 260.452 kb on - strand, within HMPREF1078_RS15720 at 260.494 kb on + strand, within HMPREF1078_RS15720 at 260.494 kb on + strand, within HMPREF1078_RS15720 at 260.497 kb on - strand, within HMPREF1078_RS15720 at 260.503 kb on - strand, within HMPREF1078_RS15720
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corncob 2.5 mg/mL (C) remove 258,142 + HMPREF1078_RS15710 0.32 +0.1 258,143 - HMPREF1078_RS15710 0.32 -0.4 258,243 + HMPREF1078_RS15710 0.40 +0.3 258,244 - HMPREF1078_RS15710 0.40 -1.6 258,244 - HMPREF1078_RS15710 0.40 -0.6 258,284 - HMPREF1078_RS15710 0.43 +0.5 258,324 + HMPREF1078_RS15710 0.45 +0.5 258,328 + HMPREF1078_RS15710 0.46 -0.8 258,328 + HMPREF1078_RS15710 0.46 -0.6 258,329 - HMPREF1078_RS15710 0.46 -1.0 258,329 - HMPREF1078_RS15710 0.46 -1.7 258,347 - HMPREF1078_RS15710 0.47 +0.8 258,347 - HMPREF1078_RS15710 0.47 +2.8 258,350 - HMPREF1078_RS15710 0.47 +0.8 258,478 - HMPREF1078_RS15710 0.57 +1.3 258,566 + HMPREF1078_RS15710 0.63 +0.4 258,577 + HMPREF1078_RS15710 0.64 -0.3 258,652 + HMPREF1078_RS15710 0.69 -0.0 258,653 - HMPREF1078_RS15710 0.69 -1.3 258,718 - HMPREF1078_RS15710 0.74 -1.6 258,718 - HMPREF1078_RS15710 0.74 +0.8 258,772 + HMPREF1078_RS15710 0.78 -1.5 258,772 + HMPREF1078_RS15710 0.78 +0.2 258,806 + HMPREF1078_RS15710 0.80 -0.4 258,806 + HMPREF1078_RS15710 0.80 -0.2 258,806 + HMPREF1078_RS15710 0.80 +1.4 258,807 - HMPREF1078_RS15710 0.80 +0.0 258,807 - HMPREF1078_RS15710 0.80 -0.1 258,807 - HMPREF1078_RS15710 0.80 -1.2 258,854 - HMPREF1078_RS15710 0.84 -0.3 258,875 + HMPREF1078_RS15710 0.85 -0.4 258,875 + HMPREF1078_RS15710 0.85 +0.4 258,875 + HMPREF1078_RS15710 0.85 +0.4 258,875 + HMPREF1078_RS15710 0.85 +0.7 258,876 - HMPREF1078_RS15710 0.85 -1.0 258,876 - HMPREF1078_RS15710 0.85 +0.8 258,894 - HMPREF1078_RS15710 0.87 +0.3 259,063 + +0.6 259,079 + +1.4 259,139 + -1.1 259,152 - -0.9 259,152 - -0.5 259,182 + HMPREF1078_RS15715 0.15 +0.4 259,202 + HMPREF1078_RS15715 0.20 -0.3 259,203 + HMPREF1078_RS15715 0.20 +0.7 259,204 - HMPREF1078_RS15715 0.21 -0.2 259,204 - HMPREF1078_RS15715 0.21 -1.2 259,205 + HMPREF1078_RS15715 0.21 +1.6 259,206 - HMPREF1078_RS15715 0.21 +0.3 259,206 - HMPREF1078_RS15715 0.21 -0.3 259,216 - HMPREF1078_RS15715 0.24 -0.8 259,297 + HMPREF1078_RS15715 0.43 +0.6 259,361 - HMPREF1078_RS15715 0.58 -0.5 259,435 + HMPREF1078_RS15715 0.76 +2.3 259,436 + HMPREF1078_RS15715 0.76 +1.8 259,437 - HMPREF1078_RS15715 0.76 +0.3 259,437 - HMPREF1078_RS15715 0.76 -0.1 259,470 + HMPREF1078_RS15715 0.84 -1.5 259,501 + +0.7 259,501 + -0.6 259,502 - -0.3 259,551 + +1.1 259,554 + -0.3 259,554 + +1.0 259,556 + +0.5 259,557 - -1.6 259,567 + -0.0 259,568 - +0.5 259,568 - -0.6 259,569 + -1.2 259,610 + HMPREF1078_RS20075 0.22 -0.0 259,611 - HMPREF1078_RS20075 0.23 -0.5 259,629 + HMPREF1078_RS20075 0.37 +1.1 259,630 - HMPREF1078_RS20075 0.38 +0.7 259,639 - HMPREF1078_RS20075 0.45 +0.4 259,647 + HMPREF1078_RS20075 0.52 -0.4 259,647 + HMPREF1078_RS20075 0.52 +0.6 259,657 - HMPREF1078_RS20075 0.60 -0.6 259,657 - HMPREF1078_RS20075 0.60 -1.7 259,709 - -1.7 259,730 + +0.9 259,736 - -0.9 259,743 - -0.1 259,750 - -1.0 259,779 - -0.6 259,848 - +1.0 259,848 - -1.1 259,864 + +0.4 259,933 + +0.3 259,934 - -1.2 259,936 + -1.6 259,936 + -0.8 259,936 + -0.2 259,944 + +1.4 259,944 + -1.1 259,944 + +0.8 259,944 + -1.5 259,944 + -1.4 259,944 + -0.3 259,944 + -0.3 259,944 + -1.4 259,944 + +0.1 259,944 + -1.5 259,945 - -1.5 259,965 + -0.2 259,966 - -0.3 259,969 - -0.3 259,988 - -2.5 259,988 - -0.6 259,993 + -1.2 259,997 - -0.4 260,050 + HMPREF1078_RS15720 0.11 +0.5 260,100 + HMPREF1078_RS15720 0.17 -0.2 260,156 + HMPREF1078_RS15720 0.23 -1.0 260,165 + HMPREF1078_RS15720 0.24 +0.3 260,224 + HMPREF1078_RS15720 0.30 -0.1 260,225 - HMPREF1078_RS15720 0.30 -0.1 260,287 + HMPREF1078_RS15720 0.37 -1.4 260,288 - HMPREF1078_RS15720 0.37 +0.4 260,317 + HMPREF1078_RS15720 0.40 -1.8 260,320 - HMPREF1078_RS15720 0.41 +0.3 260,328 - HMPREF1078_RS15720 0.42 -0.3 260,329 + HMPREF1078_RS15720 0.42 -0.5 260,354 - HMPREF1078_RS15720 0.45 -1.5 260,405 - HMPREF1078_RS15720 0.50 -0.7 260,406 + HMPREF1078_RS15720 0.50 -0.5 260,406 + HMPREF1078_RS15720 0.50 +1.0 260,452 - HMPREF1078_RS15720 0.55 +0.3 260,494 + HMPREF1078_RS15720 0.60 +0.8 260,494 + HMPREF1078_RS15720 0.60 -0.1 260,497 - HMPREF1078_RS15720 0.60 +0.3 260,503 - HMPREF1078_RS15720 0.61 -0.4
Or see this region's nucleotide sequence