Experiment: Xylan from corncob 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15620 and HMPREF1078_RS15625 are separated by 4 nucleotides HMPREF1078_RS15625 and HMPREF1078_RS15630 are separated by 76 nucleotides
HMPREF1078_RS15620: HMPREF1078_RS15620 - Ig domain-containing protein, at 237,897 to 239,537
_RS15620
HMPREF1078_RS15625: HMPREF1078_RS15625 - toxin-antitoxin system YwqK family antitoxin, at 239,542 to 240,018
_RS15625
HMPREF1078_RS15630: HMPREF1078_RS15630 - alkaline phosphatase family protein, at 240,095 to 241,972
_RS15630
Position (kb) 239
240
241 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 238.611 kb on + strand, within HMPREF1078_RS15620 at 238.656 kb on - strand, within HMPREF1078_RS15620 at 238.656 kb on - strand, within HMPREF1078_RS15620 at 238.666 kb on - strand, within HMPREF1078_RS15620 at 238.666 kb on - strand, within HMPREF1078_RS15620 at 238.689 kb on + strand, within HMPREF1078_RS15620 at 238.765 kb on + strand, within HMPREF1078_RS15620 at 238.766 kb on - strand, within HMPREF1078_RS15620 at 238.781 kb on + strand, within HMPREF1078_RS15620 at 238.782 kb on - strand, within HMPREF1078_RS15620 at 239.111 kb on - strand, within HMPREF1078_RS15620 at 239.174 kb on - strand, within HMPREF1078_RS15620 at 239.251 kb on + strand, within HMPREF1078_RS15620 at 239.334 kb on - strand, within HMPREF1078_RS15620 at 239.435 kb on + strand at 239.436 kb on - strand at 239.536 kb on - strand at 239.559 kb on - strand at 239.573 kb on + strand at 239.687 kb on - strand, within HMPREF1078_RS15625 at 239.697 kb on + strand, within HMPREF1078_RS15625 at 239.746 kb on + strand, within HMPREF1078_RS15625 at 239.747 kb on - strand, within HMPREF1078_RS15625 at 239.747 kb on - strand, within HMPREF1078_RS15625 at 239.823 kb on + strand, within HMPREF1078_RS15625 at 239.941 kb on - strand, within HMPREF1078_RS15625 at 240.016 kb on + strand at 240.046 kb on + strand at 240.220 kb on + strand at 240.221 kb on - strand at 240.256 kb on - strand at 240.262 kb on - strand at 240.290 kb on + strand, within HMPREF1078_RS15630 at 240.313 kb on - strand, within HMPREF1078_RS15630 at 240.344 kb on + strand, within HMPREF1078_RS15630 at 240.345 kb on - strand, within HMPREF1078_RS15630 at 240.429 kb on - strand, within HMPREF1078_RS15630 at 240.430 kb on + strand, within HMPREF1078_RS15630 at 240.430 kb on + strand, within HMPREF1078_RS15630 at 240.430 kb on + strand, within HMPREF1078_RS15630 at 240.431 kb on - strand, within HMPREF1078_RS15630 at 240.431 kb on - strand, within HMPREF1078_RS15630 at 240.431 kb on - strand, within HMPREF1078_RS15630 at 240.431 kb on - strand, within HMPREF1078_RS15630 at 240.450 kb on + strand, within HMPREF1078_RS15630 at 240.499 kb on + strand, within HMPREF1078_RS15630 at 240.519 kb on - strand, within HMPREF1078_RS15630 at 240.644 kb on + strand, within HMPREF1078_RS15630 at 240.722 kb on - strand, within HMPREF1078_RS15630 at 240.811 kb on - strand, within HMPREF1078_RS15630 at 240.864 kb on + strand, within HMPREF1078_RS15630 at 240.865 kb on - strand, within HMPREF1078_RS15630 at 241.005 kb on + strand, within HMPREF1078_RS15630 at 241.005 kb on + strand, within HMPREF1078_RS15630 at 241.005 kb on + strand, within HMPREF1078_RS15630 at 241.005 kb on + strand, within HMPREF1078_RS15630
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corncob 2.5 mg/mL (C) remove 238,611 + HMPREF1078_RS15620 0.44 +0.9 238,656 - HMPREF1078_RS15620 0.46 -0.7 238,656 - HMPREF1078_RS15620 0.46 -2.0 238,666 - HMPREF1078_RS15620 0.47 +0.3 238,666 - HMPREF1078_RS15620 0.47 -1.1 238,689 + HMPREF1078_RS15620 0.48 +1.2 238,765 + HMPREF1078_RS15620 0.53 -0.0 238,766 - HMPREF1078_RS15620 0.53 -0.5 238,781 + HMPREF1078_RS15620 0.54 +0.6 238,782 - HMPREF1078_RS15620 0.54 +0.1 239,111 - HMPREF1078_RS15620 0.74 -1.1 239,174 - HMPREF1078_RS15620 0.78 -0.4 239,251 + HMPREF1078_RS15620 0.83 +1.6 239,334 - HMPREF1078_RS15620 0.88 -0.9 239,435 + +0.4 239,436 - +0.1 239,536 - -0.3 239,559 - +0.1 239,573 + +0.4 239,687 - HMPREF1078_RS15625 0.30 -0.6 239,697 + HMPREF1078_RS15625 0.32 +0.0 239,746 + HMPREF1078_RS15625 0.43 +1.0 239,747 - HMPREF1078_RS15625 0.43 +0.1 239,747 - HMPREF1078_RS15625 0.43 +0.7 239,823 + HMPREF1078_RS15625 0.59 +1.1 239,941 - HMPREF1078_RS15625 0.84 -0.8 240,016 + -3.1 240,046 + -1.3 240,220 + -0.6 240,221 - -1.9 240,256 - +0.4 240,262 - -1.6 240,290 + HMPREF1078_RS15630 0.10 +0.3 240,313 - HMPREF1078_RS15630 0.12 +0.4 240,344 + HMPREF1078_RS15630 0.13 +0.1 240,345 - HMPREF1078_RS15630 0.13 +0.4 240,429 - HMPREF1078_RS15630 0.18 -0.3 240,430 + HMPREF1078_RS15630 0.18 -2.5 240,430 + HMPREF1078_RS15630 0.18 -1.8 240,430 + HMPREF1078_RS15630 0.18 -0.7 240,431 - HMPREF1078_RS15630 0.18 +0.1 240,431 - HMPREF1078_RS15630 0.18 -2.7 240,431 - HMPREF1078_RS15630 0.18 -1.3 240,431 - HMPREF1078_RS15630 0.18 -0.1 240,450 + HMPREF1078_RS15630 0.19 -1.3 240,499 + HMPREF1078_RS15630 0.22 -4.0 240,519 - HMPREF1078_RS15630 0.23 -2.7 240,644 + HMPREF1078_RS15630 0.29 -0.5 240,722 - HMPREF1078_RS15630 0.33 -0.0 240,811 - HMPREF1078_RS15630 0.38 -1.1 240,864 + HMPREF1078_RS15630 0.41 -1.1 240,865 - HMPREF1078_RS15630 0.41 -2.7 241,005 + HMPREF1078_RS15630 0.48 -0.1 241,005 + HMPREF1078_RS15630 0.48 -0.7 241,005 + HMPREF1078_RS15630 0.48 -0.2 241,005 + HMPREF1078_RS15630 0.48 -1.1
Or see this region's nucleotide sequence