Experiment: Xylan from corncob 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS12430 and HMPREF1078_RS12435 are separated by 13 nucleotides HMPREF1078_RS12435 and HMPREF1078_RS12440 are separated by 497 nucleotides
HMPREF1078_RS12430: HMPREF1078_RS12430 - TolC family protein, at 480,130 to 481,575
_RS12430
HMPREF1078_RS12435: HMPREF1078_RS12435 - efflux RND transporter permease subunit, at 481,589 to 484,855
_RS12435
HMPREF1078_RS12440: HMPREF1078_RS12440 - O-antigen ligase family protein, at 485,353 to 487,011
_RS12440
Position (kb) 481
482
483
484
485 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 480.620 kb on + strand, within HMPREF1078_RS12430 at 480.624 kb on + strand, within HMPREF1078_RS12430 at 480.624 kb on + strand, within HMPREF1078_RS12430 at 480.625 kb on - strand, within HMPREF1078_RS12430 at 480.757 kb on - strand, within HMPREF1078_RS12430 at 480.762 kb on - strand, within HMPREF1078_RS12430 at 480.862 kb on + strand, within HMPREF1078_RS12430 at 480.877 kb on + strand, within HMPREF1078_RS12430 at 480.906 kb on - strand, within HMPREF1078_RS12430 at 481.013 kb on + strand, within HMPREF1078_RS12430 at 481.014 kb on - strand, within HMPREF1078_RS12430 at 481.112 kb on + strand, within HMPREF1078_RS12430 at 481.207 kb on - strand, within HMPREF1078_RS12430 at 481.207 kb on - strand, within HMPREF1078_RS12430 at 481.363 kb on + strand, within HMPREF1078_RS12430 at 481.364 kb on - strand, within HMPREF1078_RS12430 at 481.417 kb on - strand, within HMPREF1078_RS12430 at 481.417 kb on - strand, within HMPREF1078_RS12430 at 481.456 kb on + strand at 481.457 kb on - strand at 481.492 kb on + strand at 481.573 kb on + strand at 481.720 kb on + strand at 481.729 kb on + strand at 481.730 kb on - strand at 481.876 kb on + strand at 481.877 kb on - strand at 481.877 kb on - strand at 481.877 kb on - strand at 481.877 kb on - strand at 481.909 kb on + strand at 482.012 kb on + strand, within HMPREF1078_RS12435 at 482.047 kb on - strand, within HMPREF1078_RS12435 at 482.150 kb on + strand, within HMPREF1078_RS12435 at 482.175 kb on + strand, within HMPREF1078_RS12435 at 482.176 kb on - strand, within HMPREF1078_RS12435 at 482.180 kb on - strand, within HMPREF1078_RS12435 at 482.180 kb on - strand, within HMPREF1078_RS12435 at 482.196 kb on + strand, within HMPREF1078_RS12435 at 482.197 kb on - strand, within HMPREF1078_RS12435 at 482.301 kb on + strand, within HMPREF1078_RS12435 at 482.302 kb on - strand, within HMPREF1078_RS12435 at 482.333 kb on + strand, within HMPREF1078_RS12435 at 482.403 kb on + strand, within HMPREF1078_RS12435 at 482.439 kb on - strand, within HMPREF1078_RS12435 at 482.441 kb on + strand, within HMPREF1078_RS12435 at 482.446 kb on + strand, within HMPREF1078_RS12435 at 482.543 kb on - strand, within HMPREF1078_RS12435 at 482.575 kb on - strand, within HMPREF1078_RS12435 at 482.628 kb on - strand, within HMPREF1078_RS12435 at 482.658 kb on + strand, within HMPREF1078_RS12435 at 482.658 kb on + strand, within HMPREF1078_RS12435 at 482.658 kb on + strand, within HMPREF1078_RS12435 at 482.738 kb on - strand, within HMPREF1078_RS12435 at 482.756 kb on + strand, within HMPREF1078_RS12435 at 482.913 kb on + strand, within HMPREF1078_RS12435 at 482.913 kb on + strand, within HMPREF1078_RS12435 at 483.047 kb on - strand, within HMPREF1078_RS12435 at 483.087 kb on + strand, within HMPREF1078_RS12435 at 483.088 kb on - strand, within HMPREF1078_RS12435 at 483.109 kb on + strand, within HMPREF1078_RS12435 at 483.110 kb on - strand, within HMPREF1078_RS12435 at 483.167 kb on + strand, within HMPREF1078_RS12435 at 483.171 kb on - strand, within HMPREF1078_RS12435 at 483.180 kb on - strand, within HMPREF1078_RS12435 at 483.182 kb on + strand, within HMPREF1078_RS12435 at 483.183 kb on - strand, within HMPREF1078_RS12435 at 483.336 kb on + strand, within HMPREF1078_RS12435 at 483.344 kb on - strand, within HMPREF1078_RS12435 at 483.423 kb on + strand, within HMPREF1078_RS12435 at 483.606 kb on - strand, within HMPREF1078_RS12435 at 483.790 kb on + strand, within HMPREF1078_RS12435 at 483.803 kb on + strand, within HMPREF1078_RS12435 at 483.804 kb on - strand, within HMPREF1078_RS12435 at 483.804 kb on - strand, within HMPREF1078_RS12435 at 483.809 kb on + strand, within HMPREF1078_RS12435 at 483.810 kb on - strand, within HMPREF1078_RS12435 at 483.936 kb on - strand, within HMPREF1078_RS12435 at 484.028 kb on + strand, within HMPREF1078_RS12435 at 484.119 kb on - strand, within HMPREF1078_RS12435 at 484.119 kb on - strand, within HMPREF1078_RS12435 at 484.132 kb on + strand, within HMPREF1078_RS12435 at 484.155 kb on + strand, within HMPREF1078_RS12435 at 484.209 kb on + strand, within HMPREF1078_RS12435 at 484.221 kb on - strand, within HMPREF1078_RS12435 at 484.239 kb on - strand, within HMPREF1078_RS12435 at 484.271 kb on - strand, within HMPREF1078_RS12435 at 484.324 kb on + strand, within HMPREF1078_RS12435 at 484.324 kb on + strand, within HMPREF1078_RS12435 at 484.325 kb on - strand, within HMPREF1078_RS12435 at 484.352 kb on + strand, within HMPREF1078_RS12435 at 484.409 kb on - strand, within HMPREF1078_RS12435 at 484.409 kb on - strand, within HMPREF1078_RS12435 at 484.463 kb on - strand, within HMPREF1078_RS12435 at 484.470 kb on + strand, within HMPREF1078_RS12435 at 484.473 kb on + strand, within HMPREF1078_RS12435 at 484.473 kb on + strand, within HMPREF1078_RS12435 at 484.474 kb on - strand, within HMPREF1078_RS12435 at 484.484 kb on + strand, within HMPREF1078_RS12435 at 484.589 kb on + strand at 484.605 kb on - strand at 484.652 kb on + strand at 484.673 kb on - strand at 484.713 kb on + strand at 484.735 kb on - strand at 484.807 kb on - strand at 484.820 kb on + strand at 484.821 kb on - strand at 484.821 kb on - strand at 484.821 kb on - strand at 484.825 kb on - strand at 484.878 kb on - strand at 484.927 kb on - strand at 484.967 kb on - strand at 484.977 kb on - strand at 484.996 kb on - strand at 485.064 kb on - strand at 485.064 kb on - strand at 485.064 kb on - strand at 485.064 kb on - strand at 485.114 kb on - strand at 485.114 kb on - strand at 485.185 kb on - strand at 485.185 kb on - strand at 485.199 kb on + strand at 485.203 kb on + strand at 485.204 kb on - strand at 485.240 kb on + strand at 485.241 kb on - strand at 485.241 kb on - strand at 485.241 kb on - strand at 485.250 kb on + strand at 485.327 kb on + strand at 485.348 kb on + strand at 485.349 kb on - strand at 485.406 kb on - strand at 485.408 kb on + strand at 485.411 kb on + strand at 485.570 kb on + strand, within HMPREF1078_RS12440 at 485.610 kb on + strand, within HMPREF1078_RS12440 at 485.689 kb on + strand, within HMPREF1078_RS12440 at 485.689 kb on + strand, within HMPREF1078_RS12440 at 485.690 kb on - strand, within HMPREF1078_RS12440 at 485.691 kb on + strand, within HMPREF1078_RS12440 at 485.726 kb on + strand, within HMPREF1078_RS12440 at 485.726 kb on + strand, within HMPREF1078_RS12440 at 485.786 kb on - strand, within HMPREF1078_RS12440 at 485.806 kb on - strand, within HMPREF1078_RS12440 at 485.825 kb on + strand, within HMPREF1078_RS12440
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corncob 2.5 mg/mL (C) remove 480,620 + HMPREF1078_RS12430 0.34 -0.6 480,624 + HMPREF1078_RS12430 0.34 +0.6 480,624 + HMPREF1078_RS12430 0.34 +1.4 480,625 - HMPREF1078_RS12430 0.34 +1.6 480,757 - HMPREF1078_RS12430 0.43 +0.6 480,762 - HMPREF1078_RS12430 0.44 +0.2 480,862 + HMPREF1078_RS12430 0.51 +0.7 480,877 + HMPREF1078_RS12430 0.52 -1.2 480,906 - HMPREF1078_RS12430 0.54 +0.8 481,013 + HMPREF1078_RS12430 0.61 +1.6 481,014 - HMPREF1078_RS12430 0.61 -0.7 481,112 + HMPREF1078_RS12430 0.68 -0.4 481,207 - HMPREF1078_RS12430 0.74 +0.0 481,207 - HMPREF1078_RS12430 0.74 +1.3 481,363 + HMPREF1078_RS12430 0.85 +1.2 481,364 - HMPREF1078_RS12430 0.85 -2.2 481,417 - HMPREF1078_RS12430 0.89 -0.9 481,417 - HMPREF1078_RS12430 0.89 -0.3 481,456 + -0.7 481,457 - -0.5 481,492 + -0.7 481,573 + +0.9 481,720 + -0.4 481,729 + +1.6 481,730 - +0.2 481,876 + -0.1 481,877 - +0.2 481,877 - -0.8 481,877 - -0.3 481,877 - -0.6 481,909 + -0.2 482,012 + HMPREF1078_RS12435 0.13 -0.9 482,047 - HMPREF1078_RS12435 0.14 -2.0 482,150 + HMPREF1078_RS12435 0.17 +0.4 482,175 + HMPREF1078_RS12435 0.18 -1.6 482,176 - HMPREF1078_RS12435 0.18 -0.6 482,180 - HMPREF1078_RS12435 0.18 -1.1 482,180 - HMPREF1078_RS12435 0.18 +0.6 482,196 + HMPREF1078_RS12435 0.19 +1.0 482,197 - HMPREF1078_RS12435 0.19 -0.7 482,301 + HMPREF1078_RS12435 0.22 +0.4 482,302 - HMPREF1078_RS12435 0.22 -0.4 482,333 + HMPREF1078_RS12435 0.23 -0.7 482,403 + HMPREF1078_RS12435 0.25 +0.3 482,439 - HMPREF1078_RS12435 0.26 -1.2 482,441 + HMPREF1078_RS12435 0.26 -0.2 482,446 + HMPREF1078_RS12435 0.26 -1.6 482,543 - HMPREF1078_RS12435 0.29 +0.3 482,575 - HMPREF1078_RS12435 0.30 -1.0 482,628 - HMPREF1078_RS12435 0.32 -1.5 482,658 + HMPREF1078_RS12435 0.33 +0.2 482,658 + HMPREF1078_RS12435 0.33 -0.6 482,658 + HMPREF1078_RS12435 0.33 -1.0 482,738 - HMPREF1078_RS12435 0.35 -1.3 482,756 + HMPREF1078_RS12435 0.36 -0.7 482,913 + HMPREF1078_RS12435 0.41 +3.1 482,913 + HMPREF1078_RS12435 0.41 +1.0 483,047 - HMPREF1078_RS12435 0.45 +0.8 483,087 + HMPREF1078_RS12435 0.46 -0.7 483,088 - HMPREF1078_RS12435 0.46 -0.1 483,109 + HMPREF1078_RS12435 0.47 +0.0 483,110 - HMPREF1078_RS12435 0.47 -0.3 483,167 + HMPREF1078_RS12435 0.48 +2.3 483,171 - HMPREF1078_RS12435 0.48 -0.2 483,180 - HMPREF1078_RS12435 0.49 -2.1 483,182 + HMPREF1078_RS12435 0.49 -0.1 483,183 - HMPREF1078_RS12435 0.49 +1.0 483,336 + HMPREF1078_RS12435 0.53 -0.7 483,344 - HMPREF1078_RS12435 0.54 +0.2 483,423 + HMPREF1078_RS12435 0.56 +0.0 483,606 - HMPREF1078_RS12435 0.62 -0.5 483,790 + HMPREF1078_RS12435 0.67 -0.4 483,803 + HMPREF1078_RS12435 0.68 +0.9 483,804 - HMPREF1078_RS12435 0.68 -0.9 483,804 - HMPREF1078_RS12435 0.68 -1.8 483,809 + HMPREF1078_RS12435 0.68 -0.2 483,810 - HMPREF1078_RS12435 0.68 +0.4 483,936 - HMPREF1078_RS12435 0.72 -0.1 484,028 + HMPREF1078_RS12435 0.75 +1.8 484,119 - HMPREF1078_RS12435 0.77 -1.3 484,119 - HMPREF1078_RS12435 0.77 +1.1 484,132 + HMPREF1078_RS12435 0.78 +0.2 484,155 + HMPREF1078_RS12435 0.79 -0.6 484,209 + HMPREF1078_RS12435 0.80 -0.8 484,221 - HMPREF1078_RS12435 0.81 -0.0 484,239 - HMPREF1078_RS12435 0.81 -1.2 484,271 - HMPREF1078_RS12435 0.82 +1.5 484,324 + HMPREF1078_RS12435 0.84 -0.6 484,324 + HMPREF1078_RS12435 0.84 +0.1 484,325 - HMPREF1078_RS12435 0.84 -1.2 484,352 + HMPREF1078_RS12435 0.85 -0.9 484,409 - HMPREF1078_RS12435 0.86 -0.9 484,409 - HMPREF1078_RS12435 0.86 -0.9 484,463 - HMPREF1078_RS12435 0.88 -0.7 484,470 + HMPREF1078_RS12435 0.88 -2.2 484,473 + HMPREF1078_RS12435 0.88 -4.4 484,473 + HMPREF1078_RS12435 0.88 +0.5 484,474 - HMPREF1078_RS12435 0.88 +0.2 484,484 + HMPREF1078_RS12435 0.89 -0.2 484,589 + +0.2 484,605 - -0.3 484,652 + +0.3 484,673 - +1.0 484,713 + +0.3 484,735 - +0.3 484,807 - -1.9 484,820 + -0.2 484,821 - -0.1 484,821 - +0.6 484,821 - -0.4 484,825 - +1.4 484,878 - +0.7 484,927 - +0.6 484,967 - +0.4 484,977 - -0.8 484,996 - +0.2 485,064 - -1.1 485,064 - -0.7 485,064 - +0.5 485,064 - +0.1 485,114 - +0.3 485,114 - -1.7 485,185 - +0.2 485,185 - +0.3 485,199 + +0.8 485,203 + -0.1 485,204 - -1.3 485,240 + -4.7 485,241 - -0.7 485,241 - -0.9 485,241 - -0.4 485,250 + -1.2 485,327 + +0.5 485,348 + -1.7 485,349 - +0.3 485,406 - -1.7 485,408 + +0.1 485,411 + -0.8 485,570 + HMPREF1078_RS12440 0.13 -0.7 485,610 + HMPREF1078_RS12440 0.15 +0.3 485,689 + HMPREF1078_RS12440 0.20 +2.3 485,689 + HMPREF1078_RS12440 0.20 -0.8 485,690 - HMPREF1078_RS12440 0.20 -0.8 485,691 + HMPREF1078_RS12440 0.20 -0.9 485,726 + HMPREF1078_RS12440 0.22 -0.1 485,726 + HMPREF1078_RS12440 0.22 -0.7 485,786 - HMPREF1078_RS12440 0.26 +0.8 485,806 - HMPREF1078_RS12440 0.27 +1.5 485,825 + HMPREF1078_RS12440 0.28 +0.6
Or see this region's nucleotide sequence