Experiment: Xylan from corncob 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08030 and HMPREF1078_RS08035 are separated by 179 nucleotides HMPREF1078_RS08035 and HMPREF1078_RS08040 are separated by 268 nucleotides
HMPREF1078_RS08030: HMPREF1078_RS08030 - MATE family efflux transporter, at 167,919 to 169,262
_RS08030
HMPREF1078_RS08035: HMPREF1078_RS08035 - magnesium transporter CorA family protein, at 169,442 to 170,368
_RS08035
HMPREF1078_RS08040: HMPREF1078_RS08040 - winged helix DNA-binding domain-containing protein, at 170,637 to 171,707
_RS08040
Position (kb) 169
170
171 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 168.545 kb on + strand, within HMPREF1078_RS08030 at 168.555 kb on + strand, within HMPREF1078_RS08030 at 168.557 kb on + strand, within HMPREF1078_RS08030 at 168.557 kb on + strand, within HMPREF1078_RS08030 at 168.557 kb on + strand, within HMPREF1078_RS08030 at 168.557 kb on + strand, within HMPREF1078_RS08030 at 168.558 kb on - strand, within HMPREF1078_RS08030 at 168.558 kb on - strand, within HMPREF1078_RS08030 at 168.558 kb on - strand, within HMPREF1078_RS08030 at 168.558 kb on - strand, within HMPREF1078_RS08030 at 168.581 kb on - strand, within HMPREF1078_RS08030 at 168.710 kb on + strand, within HMPREF1078_RS08030 at 168.773 kb on + strand, within HMPREF1078_RS08030 at 168.880 kb on + strand, within HMPREF1078_RS08030 at 168.944 kb on + strand, within HMPREF1078_RS08030 at 168.945 kb on - strand, within HMPREF1078_RS08030 at 169.048 kb on - strand, within HMPREF1078_RS08030 at 169.071 kb on - strand, within HMPREF1078_RS08030 at 169.113 kb on - strand, within HMPREF1078_RS08030 at 169.132 kb on - strand at 169.242 kb on + strand at 169.242 kb on + strand at 169.280 kb on + strand at 169.283 kb on - strand at 169.288 kb on + strand at 169.372 kb on - strand at 169.376 kb on - strand at 169.376 kb on - strand at 169.395 kb on + strand at 169.413 kb on + strand at 169.413 kb on + strand at 169.413 kb on + strand at 169.414 kb on - strand at 169.440 kb on + strand at 169.440 kb on + strand at 169.457 kb on + strand at 169.515 kb on + strand at 169.516 kb on - strand at 169.538 kb on - strand, within HMPREF1078_RS08035 at 169.622 kb on + strand, within HMPREF1078_RS08035 at 169.623 kb on - strand, within HMPREF1078_RS08035 at 169.711 kb on + strand, within HMPREF1078_RS08035 at 169.711 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.735 kb on - strand, within HMPREF1078_RS08035 at 169.735 kb on - strand, within HMPREF1078_RS08035 at 169.735 kb on - strand, within HMPREF1078_RS08035 at 169.749 kb on - strand, within HMPREF1078_RS08035 at 169.817 kb on + strand, within HMPREF1078_RS08035 at 169.817 kb on + strand, within HMPREF1078_RS08035 at 169.817 kb on + strand, within HMPREF1078_RS08035 at 169.999 kb on + strand, within HMPREF1078_RS08035 at 170.048 kb on + strand, within HMPREF1078_RS08035 at 170.051 kb on - strand, within HMPREF1078_RS08035 at 170.088 kb on + strand, within HMPREF1078_RS08035 at 170.088 kb on + strand, within HMPREF1078_RS08035 at 170.117 kb on + strand, within HMPREF1078_RS08035 at 170.117 kb on + strand, within HMPREF1078_RS08035 at 170.118 kb on - strand, within HMPREF1078_RS08035 at 170.118 kb on - strand, within HMPREF1078_RS08035 at 170.246 kb on + strand, within HMPREF1078_RS08035 at 170.246 kb on + strand, within HMPREF1078_RS08035 at 170.247 kb on - strand, within HMPREF1078_RS08035 at 170.247 kb on - strand, within HMPREF1078_RS08035 at 170.251 kb on + strand, within HMPREF1078_RS08035 at 170.268 kb on - strand, within HMPREF1078_RS08035 at 170.322 kb on + strand at 170.322 kb on + strand at 170.322 kb on + strand at 170.372 kb on - strand at 170.437 kb on - strand at 170.437 kb on - strand at 170.437 kb on - strand at 170.440 kb on + strand at 170.468 kb on + strand at 170.468 kb on + strand at 170.469 kb on - strand at 170.471 kb on + strand at 170.471 kb on + strand at 170.472 kb on - strand at 170.472 kb on - strand at 170.472 kb on - strand at 170.489 kb on - strand at 170.493 kb on - strand at 170.513 kb on + strand at 170.528 kb on - strand at 170.550 kb on + strand at 170.569 kb on + strand at 170.574 kb on - strand at 170.574 kb on - strand at 170.575 kb on + strand at 170.577 kb on - strand at 170.579 kb on + strand at 170.579 kb on - strand at 170.623 kb on + strand at 170.803 kb on + strand, within HMPREF1078_RS08040 at 170.804 kb on - strand, within HMPREF1078_RS08040 at 170.835 kb on - strand, within HMPREF1078_RS08040 at 170.835 kb on - strand, within HMPREF1078_RS08040 at 170.835 kb on - strand, within HMPREF1078_RS08040 at 170.887 kb on + strand, within HMPREF1078_RS08040 at 170.888 kb on - strand, within HMPREF1078_RS08040 at 170.888 kb on - strand, within HMPREF1078_RS08040 at 170.899 kb on + strand, within HMPREF1078_RS08040 at 170.900 kb on - strand, within HMPREF1078_RS08040 at 170.908 kb on + strand, within HMPREF1078_RS08040 at 170.909 kb on - strand, within HMPREF1078_RS08040 at 170.972 kb on - strand, within HMPREF1078_RS08040 at 171.081 kb on - strand, within HMPREF1078_RS08040 at 171.108 kb on + strand, within HMPREF1078_RS08040 at 171.184 kb on + strand, within HMPREF1078_RS08040 at 171.184 kb on + strand, within HMPREF1078_RS08040 at 171.185 kb on - strand, within HMPREF1078_RS08040 at 171.185 kb on - strand, within HMPREF1078_RS08040 at 171.185 kb on - strand, within HMPREF1078_RS08040 at 171.204 kb on - strand, within HMPREF1078_RS08040 at 171.204 kb on - strand, within HMPREF1078_RS08040 at 171.208 kb on - strand, within HMPREF1078_RS08040 at 171.253 kb on + strand, within HMPREF1078_RS08040 at 171.254 kb on - strand, within HMPREF1078_RS08040 at 171.259 kb on - strand, within HMPREF1078_RS08040 at 171.359 kb on + strand, within HMPREF1078_RS08040 at 171.360 kb on - strand, within HMPREF1078_RS08040
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corncob 2.5 mg/mL (C) remove 168,545 + HMPREF1078_RS08030 0.47 -0.6 168,555 + HMPREF1078_RS08030 0.47 -0.6 168,557 + HMPREF1078_RS08030 0.47 -0.2 168,557 + HMPREF1078_RS08030 0.47 -1.7 168,557 + HMPREF1078_RS08030 0.47 +0.9 168,557 + HMPREF1078_RS08030 0.47 -2.6 168,558 - HMPREF1078_RS08030 0.48 -1.8 168,558 - HMPREF1078_RS08030 0.48 +0.2 168,558 - HMPREF1078_RS08030 0.48 +0.3 168,558 - HMPREF1078_RS08030 0.48 -2.0 168,581 - HMPREF1078_RS08030 0.49 -0.1 168,710 + HMPREF1078_RS08030 0.59 -1.8 168,773 + HMPREF1078_RS08030 0.64 +1.5 168,880 + HMPREF1078_RS08030 0.72 -0.4 168,944 + HMPREF1078_RS08030 0.76 -0.5 168,945 - HMPREF1078_RS08030 0.76 -0.5 169,048 - HMPREF1078_RS08030 0.84 -0.4 169,071 - HMPREF1078_RS08030 0.86 +1.7 169,113 - HMPREF1078_RS08030 0.89 -1.4 169,132 - +2.8 169,242 + -0.4 169,242 + +0.7 169,280 + +0.8 169,283 - -0.0 169,288 + -1.3 169,372 - +0.1 169,376 - -2.3 169,376 - -2.1 169,395 + -0.8 169,413 + -0.3 169,413 + -2.2 169,413 + -0.2 169,414 - -1.2 169,440 + -0.8 169,440 + -1.1 169,457 + -1.2 169,515 + +0.5 169,516 - -2.6 169,538 - HMPREF1078_RS08035 0.10 -3.1 169,622 + HMPREF1078_RS08035 0.19 -0.2 169,623 - HMPREF1078_RS08035 0.20 -1.9 169,711 + HMPREF1078_RS08035 0.29 -1.3 169,711 + HMPREF1078_RS08035 0.29 -0.4 169,734 + HMPREF1078_RS08035 0.31 -0.8 169,734 + HMPREF1078_RS08035 0.31 -0.5 169,734 + HMPREF1078_RS08035 0.31 -1.9 169,734 + HMPREF1078_RS08035 0.31 -3.2 169,734 + HMPREF1078_RS08035 0.31 -3.3 169,734 + HMPREF1078_RS08035 0.31 -1.8 169,734 + HMPREF1078_RS08035 0.31 -1.4 169,735 - HMPREF1078_RS08035 0.32 -1.4 169,735 - HMPREF1078_RS08035 0.32 -0.3 169,735 - HMPREF1078_RS08035 0.32 -2.9 169,749 - HMPREF1078_RS08035 0.33 -0.8 169,817 + HMPREF1078_RS08035 0.40 -1.2 169,817 + HMPREF1078_RS08035 0.40 -2.4 169,817 + HMPREF1078_RS08035 0.40 -0.8 169,999 + HMPREF1078_RS08035 0.60 -0.4 170,048 + HMPREF1078_RS08035 0.65 -1.4 170,051 - HMPREF1078_RS08035 0.66 -0.9 170,088 + HMPREF1078_RS08035 0.70 -2.5 170,088 + HMPREF1078_RS08035 0.70 -0.7 170,117 + HMPREF1078_RS08035 0.73 -1.9 170,117 + HMPREF1078_RS08035 0.73 -3.7 170,118 - HMPREF1078_RS08035 0.73 -1.8 170,118 - HMPREF1078_RS08035 0.73 -1.4 170,246 + HMPREF1078_RS08035 0.87 -1.5 170,246 + HMPREF1078_RS08035 0.87 -3.6 170,247 - HMPREF1078_RS08035 0.87 -3.3 170,247 - HMPREF1078_RS08035 0.87 -0.4 170,251 + HMPREF1078_RS08035 0.87 +0.4 170,268 - HMPREF1078_RS08035 0.89 -0.4 170,322 + -2.5 170,322 + -3.0 170,322 + -2.4 170,372 - +0.7 170,437 - -0.2 170,437 - -0.6 170,437 - +0.0 170,440 + -0.0 170,468 + -0.2 170,468 + +0.5 170,469 - +0.7 170,471 + -1.2 170,471 + +0.5 170,472 - -0.8 170,472 - +0.1 170,472 - +0.3 170,489 - -1.3 170,493 - +0.1 170,513 + -1.2 170,528 - -0.1 170,550 + +0.1 170,569 + +0.8 170,574 - +1.1 170,574 - +0.1 170,575 + -0.6 170,577 - +0.4 170,579 + +0.1 170,579 - -1.4 170,623 + +0.1 170,803 + HMPREF1078_RS08040 0.15 +0.8 170,804 - HMPREF1078_RS08040 0.16 -1.3 170,835 - HMPREF1078_RS08040 0.18 +0.1 170,835 - HMPREF1078_RS08040 0.18 -0.2 170,835 - HMPREF1078_RS08040 0.18 +0.1 170,887 + HMPREF1078_RS08040 0.23 -0.9 170,888 - HMPREF1078_RS08040 0.23 -0.4 170,888 - HMPREF1078_RS08040 0.23 -1.1 170,899 + HMPREF1078_RS08040 0.24 -1.2 170,900 - HMPREF1078_RS08040 0.25 +1.9 170,908 + HMPREF1078_RS08040 0.25 -0.4 170,909 - HMPREF1078_RS08040 0.25 +0.1 170,972 - HMPREF1078_RS08040 0.31 -0.5 171,081 - HMPREF1078_RS08040 0.41 +0.2 171,108 + HMPREF1078_RS08040 0.44 -1.6 171,184 + HMPREF1078_RS08040 0.51 -0.8 171,184 + HMPREF1078_RS08040 0.51 -0.4 171,185 - HMPREF1078_RS08040 0.51 +0.1 171,185 - HMPREF1078_RS08040 0.51 +0.3 171,185 - HMPREF1078_RS08040 0.51 -0.8 171,204 - HMPREF1078_RS08040 0.53 +1.1 171,204 - HMPREF1078_RS08040 0.53 +1.4 171,208 - HMPREF1078_RS08040 0.53 +0.6 171,253 + HMPREF1078_RS08040 0.58 -0.5 171,254 - HMPREF1078_RS08040 0.58 -0.1 171,259 - HMPREF1078_RS08040 0.58 -0.2 171,359 + HMPREF1078_RS08040 0.67 -0.4 171,360 - HMPREF1078_RS08040 0.68 -2.5
Or see this region's nucleotide sequence