Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS08025

Experiment: Xylan from corncob 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS08020 and HMPREF1078_RS08025 are separated by 9 nucleotidesHMPREF1078_RS08025 and HMPREF1078_RS08030 are separated by 130 nucleotides HMPREF1078_RS08020: HMPREF1078_RS08020 - phosphatidylglycerol lysyltransferase domain-containing protein, at 165,926 to 166,834 _RS08020 HMPREF1078_RS08025: HMPREF1078_RS08025 - GNAT family N-acetyltransferase, at 166,844 to 167,788 _RS08025 HMPREF1078_RS08030: HMPREF1078_RS08030 - MATE family efflux transporter, at 167,919 to 169,262 _RS08030 Position (kb) 166 167 168Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 165.967 kb on + strandat 165.967 kb on + strandat 165.967 kb on + strandat 165.967 kb on + strandat 165.968 kb on - strandat 165.968 kb on - strandat 165.968 kb on - strandat 165.968 kb on - strandat 165.970 kb on + strandat 165.971 kb on - strandat 165.971 kb on - strandat 165.972 kb on + strandat 165.972 kb on + strandat 165.972 kb on + strandat 165.973 kb on - strandat 165.982 kb on + strandat 165.982 kb on + strandat 165.983 kb on - strandat 166.014 kb on - strandat 166.124 kb on + strand, within HMPREF1078_RS08020at 166.124 kb on + strand, within HMPREF1078_RS08020at 166.126 kb on + strand, within HMPREF1078_RS08020at 166.126 kb on + strand, within HMPREF1078_RS08020at 166.127 kb on - strand, within HMPREF1078_RS08020at 166.127 kb on - strand, within HMPREF1078_RS08020at 166.127 kb on - strand, within HMPREF1078_RS08020at 166.127 kb on - strand, within HMPREF1078_RS08020at 166.127 kb on - strand, within HMPREF1078_RS08020at 166.127 kb on - strand, within HMPREF1078_RS08020at 166.211 kb on - strand, within HMPREF1078_RS08020at 166.211 kb on - strand, within HMPREF1078_RS08020at 166.211 kb on - strand, within HMPREF1078_RS08020at 166.215 kb on + strand, within HMPREF1078_RS08020at 166.302 kb on - strand, within HMPREF1078_RS08020at 166.302 kb on - strand, within HMPREF1078_RS08020at 166.366 kb on + strand, within HMPREF1078_RS08020at 166.366 kb on + strand, within HMPREF1078_RS08020at 166.366 kb on + strand, within HMPREF1078_RS08020at 166.401 kb on - strand, within HMPREF1078_RS08020at 166.401 kb on - strand, within HMPREF1078_RS08020at 166.402 kb on + strand, within HMPREF1078_RS08020at 166.402 kb on + strand, within HMPREF1078_RS08020at 166.409 kb on - strand, within HMPREF1078_RS08020at 166.409 kb on - strand, within HMPREF1078_RS08020at 166.409 kb on - strand, within HMPREF1078_RS08020at 166.478 kb on - strand, within HMPREF1078_RS08020at 166.520 kb on + strand, within HMPREF1078_RS08020at 166.552 kb on + strand, within HMPREF1078_RS08020at 166.572 kb on + strand, within HMPREF1078_RS08020at 166.621 kb on + strand, within HMPREF1078_RS08020at 166.622 kb on - strand, within HMPREF1078_RS08020at 166.639 kb on - strand, within HMPREF1078_RS08020at 166.658 kb on + strand, within HMPREF1078_RS08020at 166.671 kb on - strand, within HMPREF1078_RS08020at 166.671 kb on - strand, within HMPREF1078_RS08020at 166.678 kb on + strand, within HMPREF1078_RS08020at 166.715 kb on + strand, within HMPREF1078_RS08020at 166.716 kb on - strand, within HMPREF1078_RS08020at 166.721 kb on + strand, within HMPREF1078_RS08020at 166.721 kb on + strand, within HMPREF1078_RS08020at 166.721 kb on + strand, within HMPREF1078_RS08020at 166.721 kb on + strand, within HMPREF1078_RS08020at 166.722 kb on - strand, within HMPREF1078_RS08020at 166.781 kb on - strandat 166.781 kb on - strandat 166.835 kb on + strandat 166.960 kb on - strand, within HMPREF1078_RS08025at 167.015 kb on + strand, within HMPREF1078_RS08025at 167.043 kb on - strand, within HMPREF1078_RS08025at 167.043 kb on - strand, within HMPREF1078_RS08025at 167.048 kb on + strand, within HMPREF1078_RS08025at 167.048 kb on + strand, within HMPREF1078_RS08025at 167.048 kb on + strand, within HMPREF1078_RS08025at 167.048 kb on + strand, within HMPREF1078_RS08025at 167.184 kb on - strand, within HMPREF1078_RS08025at 167.196 kb on + strand, within HMPREF1078_RS08025at 167.197 kb on - strand, within HMPREF1078_RS08025at 167.203 kb on + strand, within HMPREF1078_RS08025at 167.203 kb on + strand, within HMPREF1078_RS08025at 167.203 kb on + strand, within HMPREF1078_RS08025at 167.204 kb on - strand, within HMPREF1078_RS08025at 167.204 kb on - strand, within HMPREF1078_RS08025at 167.204 kb on - strand, within HMPREF1078_RS08025at 167.220 kb on - strand, within HMPREF1078_RS08025at 167.234 kb on + strand, within HMPREF1078_RS08025at 167.234 kb on + strand, within HMPREF1078_RS08025at 167.235 kb on - strand, within HMPREF1078_RS08025at 167.326 kb on + strand, within HMPREF1078_RS08025at 167.344 kb on + strand, within HMPREF1078_RS08025at 167.344 kb on + strand, within HMPREF1078_RS08025at 167.345 kb on - strand, within HMPREF1078_RS08025at 167.351 kb on + strand, within HMPREF1078_RS08025at 167.384 kb on - strand, within HMPREF1078_RS08025at 167.398 kb on - strand, within HMPREF1078_RS08025at 167.485 kb on + strand, within HMPREF1078_RS08025at 167.486 kb on - strand, within HMPREF1078_RS08025at 167.486 kb on - strand, within HMPREF1078_RS08025at 167.489 kb on + strand, within HMPREF1078_RS08025at 167.489 kb on + strand, within HMPREF1078_RS08025at 167.490 kb on - strand, within HMPREF1078_RS08025at 167.490 kb on - strand, within HMPREF1078_RS08025at 167.507 kb on + strand, within HMPREF1078_RS08025at 167.507 kb on + strand, within HMPREF1078_RS08025at 167.620 kb on + strand, within HMPREF1078_RS08025at 167.689 kb on + strand, within HMPREF1078_RS08025at 167.765 kb on + strandat 167.765 kb on + strandat 167.766 kb on - strandat 167.898 kb on + strandat 167.939 kb on + strandat 167.952 kb on - strandat 167.954 kb on - strandat 167.968 kb on + strandat 167.969 kb on - strandat 168.015 kb on + strandat 168.015 kb on + strandat 168.016 kb on - strandat 168.016 kb on - strandat 168.016 kb on - strandat 168.017 kb on + strandat 168.018 kb on - strandat 168.023 kb on - strandat 168.041 kb on - strandat 168.051 kb on - strandat 168.087 kb on + strand, within HMPREF1078_RS08030at 168.089 kb on + strand, within HMPREF1078_RS08030at 168.090 kb on - strand, within HMPREF1078_RS08030at 168.130 kb on - strand, within HMPREF1078_RS08030at 168.194 kb on + strand, within HMPREF1078_RS08030at 168.194 kb on + strand, within HMPREF1078_RS08030at 168.195 kb on - strand, within HMPREF1078_RS08030at 168.195 kb on - strand, within HMPREF1078_RS08030at 168.195 kb on - strand, within HMPREF1078_RS08030at 168.201 kb on + strand, within HMPREF1078_RS08030at 168.201 kb on + strand, within HMPREF1078_RS08030at 168.202 kb on - strand, within HMPREF1078_RS08030at 168.297 kb on + strand, within HMPREF1078_RS08030at 168.302 kb on + strand, within HMPREF1078_RS08030at 168.302 kb on + strand, within HMPREF1078_RS08030at 168.302 kb on + strand, within HMPREF1078_RS08030at 168.303 kb on - strand, within HMPREF1078_RS08030at 168.349 kb on + strand, within HMPREF1078_RS08030at 168.350 kb on - strand, within HMPREF1078_RS08030at 168.398 kb on - strand, within HMPREF1078_RS08030at 168.418 kb on + strand, within HMPREF1078_RS08030at 168.545 kb on + strand, within HMPREF1078_RS08030at 168.555 kb on + strand, within HMPREF1078_RS08030at 168.557 kb on + strand, within HMPREF1078_RS08030at 168.557 kb on + strand, within HMPREF1078_RS08030at 168.557 kb on + strand, within HMPREF1078_RS08030at 168.557 kb on + strand, within HMPREF1078_RS08030at 168.558 kb on - strand, within HMPREF1078_RS08030at 168.558 kb on - strand, within HMPREF1078_RS08030at 168.558 kb on - strand, within HMPREF1078_RS08030at 168.558 kb on - strand, within HMPREF1078_RS08030at 168.581 kb on - strand, within HMPREF1078_RS08030at 168.710 kb on + strand, within HMPREF1078_RS08030at 168.773 kb on + strand, within HMPREF1078_RS08030

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corncob 2.5 mg/mL (C)
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165,967 + +0.3
165,967 + -0.9
165,967 + -0.8
165,967 + -0.7
165,968 - -2.2
165,968 - -1.8
165,968 - -2.4
165,968 - -3.2
165,970 + +0.1
165,971 - -2.9
165,971 - -1.7
165,972 + -1.0
165,972 + -0.5
165,972 + -0.6
165,973 - -2.4
165,982 + -0.7
165,982 + +0.6
165,983 - -2.4
166,014 - -2.3
166,124 + HMPREF1078_RS08020 0.22 -0.2
166,124 + HMPREF1078_RS08020 0.22 -0.3
166,126 + HMPREF1078_RS08020 0.22 +1.2
166,126 + HMPREF1078_RS08020 0.22 -0.4
166,127 - HMPREF1078_RS08020 0.22 -2.7
166,127 - HMPREF1078_RS08020 0.22 -2.3
166,127 - HMPREF1078_RS08020 0.22 -3.1
166,127 - HMPREF1078_RS08020 0.22 -2.0
166,127 - HMPREF1078_RS08020 0.22 -1.2
166,127 - HMPREF1078_RS08020 0.22 -2.6
166,211 - HMPREF1078_RS08020 0.31 -2.6
166,211 - HMPREF1078_RS08020 0.31 -4.1
166,211 - HMPREF1078_RS08020 0.31 -1.3
166,215 + HMPREF1078_RS08020 0.32 +0.1
166,302 - HMPREF1078_RS08020 0.41 -1.7
166,302 - HMPREF1078_RS08020 0.41 -3.0
166,366 + HMPREF1078_RS08020 0.48 -0.8
166,366 + HMPREF1078_RS08020 0.48 -0.5
166,366 + HMPREF1078_RS08020 0.48 -0.1
166,401 - HMPREF1078_RS08020 0.52 -1.3
166,401 - HMPREF1078_RS08020 0.52 -3.2
166,402 + HMPREF1078_RS08020 0.52 -2.5
166,402 + HMPREF1078_RS08020 0.52 +1.3
166,409 - HMPREF1078_RS08020 0.53 -1.1
166,409 - HMPREF1078_RS08020 0.53 -3.2
166,409 - HMPREF1078_RS08020 0.53 -2.0
166,478 - HMPREF1078_RS08020 0.61 +2.0
166,520 + HMPREF1078_RS08020 0.65 -0.6
166,552 + HMPREF1078_RS08020 0.69 -0.9
166,572 + HMPREF1078_RS08020 0.71 +0.5
166,621 + HMPREF1078_RS08020 0.76 -1.8
166,622 - HMPREF1078_RS08020 0.77 -1.8
166,639 - HMPREF1078_RS08020 0.78 -2.1
166,658 + HMPREF1078_RS08020 0.81 -1.2
166,671 - HMPREF1078_RS08020 0.82 -1.8
166,671 - HMPREF1078_RS08020 0.82 -2.9
166,678 + HMPREF1078_RS08020 0.83 -0.1
166,715 + HMPREF1078_RS08020 0.87 -0.1
166,716 - HMPREF1078_RS08020 0.87 -2.3
166,721 + HMPREF1078_RS08020 0.87 +1.6
166,721 + HMPREF1078_RS08020 0.87 -0.6
166,721 + HMPREF1078_RS08020 0.87 +1.3
166,721 + HMPREF1078_RS08020 0.87 +0.7
166,722 - HMPREF1078_RS08020 0.88 +0.3
166,781 - -0.7
166,781 - -0.4
166,835 + -1.6
166,960 - HMPREF1078_RS08025 0.12 +0.1
167,015 + HMPREF1078_RS08025 0.18 +2.8
167,043 - HMPREF1078_RS08025 0.21 +2.4
167,043 - HMPREF1078_RS08025 0.21 -1.3
167,048 + HMPREF1078_RS08025 0.22 +0.6
167,048 + HMPREF1078_RS08025 0.22 -0.4
167,048 + HMPREF1078_RS08025 0.22 +0.4
167,048 + HMPREF1078_RS08025 0.22 +0.4
167,184 - HMPREF1078_RS08025 0.36 +1.5
167,196 + HMPREF1078_RS08025 0.37 -1.0
167,197 - HMPREF1078_RS08025 0.37 +1.6
167,203 + HMPREF1078_RS08025 0.38 +1.4
167,203 + HMPREF1078_RS08025 0.38 +0.8
167,203 + HMPREF1078_RS08025 0.38 +1.2
167,204 - HMPREF1078_RS08025 0.38 +1.6
167,204 - HMPREF1078_RS08025 0.38 +0.4
167,204 - HMPREF1078_RS08025 0.38 -1.3
167,220 - HMPREF1078_RS08025 0.40 -0.6
167,234 + HMPREF1078_RS08025 0.41 +0.6
167,234 + HMPREF1078_RS08025 0.41 -2.4
167,235 - HMPREF1078_RS08025 0.41 +0.1
167,326 + HMPREF1078_RS08025 0.51 -1.4
167,344 + HMPREF1078_RS08025 0.53 +1.1
167,344 + HMPREF1078_RS08025 0.53 +0.4
167,345 - HMPREF1078_RS08025 0.53 +1.1
167,351 + HMPREF1078_RS08025 0.54 +1.4
167,384 - HMPREF1078_RS08025 0.57 +1.6
167,398 - HMPREF1078_RS08025 0.59 +0.2
167,485 + HMPREF1078_RS08025 0.68 -3.2
167,486 - HMPREF1078_RS08025 0.68 +1.4
167,486 - HMPREF1078_RS08025 0.68 +0.9
167,489 + HMPREF1078_RS08025 0.68 +2.5
167,489 + HMPREF1078_RS08025 0.68 +0.7
167,490 - HMPREF1078_RS08025 0.68 +0.4
167,490 - HMPREF1078_RS08025 0.68 -0.8
167,507 + HMPREF1078_RS08025 0.70 -2.2
167,507 + HMPREF1078_RS08025 0.70 +0.2
167,620 + HMPREF1078_RS08025 0.82 -0.4
167,689 + HMPREF1078_RS08025 0.89 -2.3
167,765 + +1.8
167,765 + +1.6
167,766 - +1.1
167,898 + +1.1
167,939 + -0.1
167,952 - +0.5
167,954 - -1.4
167,968 + +0.1
167,969 - +0.7
168,015 + -0.4
168,015 + +1.0
168,016 - -0.9
168,016 - -0.5
168,016 - -1.3
168,017 + -1.3
168,018 - -1.7
168,023 - +0.9
168,041 - -1.1
168,051 - -1.5
168,087 + HMPREF1078_RS08030 0.12 +0.1
168,089 + HMPREF1078_RS08030 0.13 +1.1
168,090 - HMPREF1078_RS08030 0.13 -0.6
168,130 - HMPREF1078_RS08030 0.16 -1.1
168,194 + HMPREF1078_RS08030 0.20 +0.7
168,194 + HMPREF1078_RS08030 0.20 +1.4
168,195 - HMPREF1078_RS08030 0.21 +0.1
168,195 - HMPREF1078_RS08030 0.21 +0.8
168,195 - HMPREF1078_RS08030 0.21 +0.6
168,201 + HMPREF1078_RS08030 0.21 +0.9
168,201 + HMPREF1078_RS08030 0.21 +1.4
168,202 - HMPREF1078_RS08030 0.21 +1.1
168,297 + HMPREF1078_RS08030 0.28 +2.4
168,302 + HMPREF1078_RS08030 0.28 +0.4
168,302 + HMPREF1078_RS08030 0.28 -2.7
168,302 + HMPREF1078_RS08030 0.28 -0.4
168,303 - HMPREF1078_RS08030 0.29 -1.0
168,349 + HMPREF1078_RS08030 0.32 -1.2
168,350 - HMPREF1078_RS08030 0.32 -0.5
168,398 - HMPREF1078_RS08030 0.36 -2.7
168,418 + HMPREF1078_RS08030 0.37 -3.0
168,545 + HMPREF1078_RS08030 0.47 -0.6
168,555 + HMPREF1078_RS08030 0.47 -0.6
168,557 + HMPREF1078_RS08030 0.47 -0.2
168,557 + HMPREF1078_RS08030 0.47 -1.7
168,557 + HMPREF1078_RS08030 0.47 +0.9
168,557 + HMPREF1078_RS08030 0.47 -2.6
168,558 - HMPREF1078_RS08030 0.48 -1.8
168,558 - HMPREF1078_RS08030 0.48 +0.2
168,558 - HMPREF1078_RS08030 0.48 +0.3
168,558 - HMPREF1078_RS08030 0.48 -2.0
168,581 - HMPREF1078_RS08030 0.49 -0.1
168,710 + HMPREF1078_RS08030 0.59 -1.8
168,773 + HMPREF1078_RS08030 0.64 +1.5

Or see this region's nucleotide sequence