Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS07410

Experiment: Xylan from corncob 2.5 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylan from corncob 2.5 mg/mL (C)
5,790	+		HMPREF1078_RS07400	0.62	+0.7
5,790	+		HMPREF1078_RS07400	0.62	+1.0
5,791	-		HMPREF1078_RS07400	0.62	+0.4
5,815	+		HMPREF1078_RS07400	0.67	-1.1
5,835	+		HMPREF1078_RS07400	0.70	+0.1
5,835	+		HMPREF1078_RS07400	0.70	-0.4
5,836	-		HMPREF1078_RS07400	0.71	+0.4
5,910	+		HMPREF1078_RS07400	0.84	-0.4
5,910	+		HMPREF1078_RS07400	0.84	+1.2
5,929	+		HMPREF1078_RS07400	0.88	-1.1
5,929	+		HMPREF1078_RS07400	0.88	-0.4
5,930	-		HMPREF1078_RS07400	0.88	+0.5
5,930	-		HMPREF1078_RS07400	0.88	+0.1
5,936	+		HMPREF1078_RS07400	0.89	-0.8
5,936	+		HMPREF1078_RS07400	0.89	-0.1
5,937	-		HMPREF1078_RS07400	0.89	+0.4
5,937	-		HMPREF1078_RS07400	0.89	+0.4
5,972	+				+1.0
5,973	-				+0.1
5,991	+				+1.6
6,063	-				-0.4
6,077	-				-0.8
6,078	+				-1.0
6,078	+				+0.8
6,095	-				-0.2
6,096	+				-0.2
6,096	+				-0.0
6,097	-				-1.2
6,100	+				+0.1
6,101	-				-1.0
6,102	+				-0.2
6,102	+				+0.9
6,151	+		HMPREF1078_RS07405	0.16	+1.2
6,163	-		HMPREF1078_RS07405	0.18	-0.2
6,272	+		HMPREF1078_RS07405	0.41	-0.5
6,273	-		HMPREF1078_RS07405	0.41	+0.1
6,302	+		HMPREF1078_RS07405	0.47	-1.1
6,302	+		HMPREF1078_RS07405	0.47	+0.6
6,302	+		HMPREF1078_RS07405	0.47	-0.5
6,303	-		HMPREF1078_RS07405	0.48	+0.7
6,304	+		HMPREF1078_RS07405	0.48	+0.0
6,305	-		HMPREF1078_RS07405	0.48	-1.2
6,314	-		HMPREF1078_RS07405	0.50	-0.6
6,361	+		HMPREF1078_RS07405	0.60	-1.0
6,362	-		HMPREF1078_RS07405	0.60	-0.2
6,367	-		HMPREF1078_RS07405	0.61	-0.5
6,376	-		HMPREF1078_RS07405	0.63	+1.8
6,386	+		HMPREF1078_RS07405	0.65	-0.4
6,421	-		HMPREF1078_RS07405	0.73	-1.7
6,424	+		HMPREF1078_RS07405	0.73	-1.3
6,425	-		HMPREF1078_RS07405	0.73	-0.6
6,425	-		HMPREF1078_RS07405	0.73	+1.2
6,444	-		HMPREF1078_RS07405	0.77	-1.2
6,444	-		HMPREF1078_RS07405	0.77	+0.3
6,457	+		HMPREF1078_RS07405	0.80	+0.1
6,532	-				-0.6
6,578	+				+0.7
6,581	-				-0.8
6,594	+				+0.1
6,594	+				+0.7
6,594	+				+0.8
6,595	-				-0.6
6,597	+				-0.3
6,620	+				+1.9
6,620	+				-0.5
6,620	+				-0.2
6,621	-				-0.4
6,622	+				-1.4
6,622	+				-0.1
6,622	+				-0.6
6,624	+				-0.4
6,624	+				-0.4
6,624	+				+0.5
6,658	-				+1.1
6,662	-				-1.0
6,662	-				+0.5
6,662	-				-1.4
6,688	+				-0.1
6,709	-				-0.1
6,716	+				+0.8
6,728	+				-0.5
6,773	-				+1.1
6,796	-				-1.1
6,798	-				-0.4
6,798	-				+0.3
6,801	+				-0.7
6,801	+				-1.4
6,803	+				+0.5
6,803	+				-1.3
6,804	-				-0.4
6,812	-				+0.3
6,867	-				+0.5
6,886	+				+1.2
6,887	-				-0.3
6,952	-		HMPREF1078_RS07410	0.13	+0.4
6,953	+		HMPREF1078_RS07410	0.13	-0.1
6,953	+		HMPREF1078_RS07410	0.13	-0.7
6,954	-		HMPREF1078_RS07410	0.13	+0.1
6,954	-		HMPREF1078_RS07410	0.13	-0.2
6,954	-		HMPREF1078_RS07410	0.13	-1.5
7,020	+		HMPREF1078_RS07410	0.18	-0.7
7,117	+		HMPREF1078_RS07410	0.25	-0.8
7,117	+		HMPREF1078_RS07410	0.25	-0.6
7,167	+		HMPREF1078_RS07410	0.29	+1.4
7,216	-		HMPREF1078_RS07410	0.33	+0.2
7,290	-		HMPREF1078_RS07410	0.39	+0.0
7,290	-		HMPREF1078_RS07410	0.39	-0.1
7,293	-		HMPREF1078_RS07410	0.39	+1.1
7,293	-		HMPREF1078_RS07410	0.39	-2.5
7,319	+		HMPREF1078_RS07410	0.41	-0.2
7,331	-		HMPREF1078_RS07410	0.42	+2.0
7,394	+		HMPREF1078_RS07410	0.47	+0.2
7,398	+		HMPREF1078_RS07410	0.47	-0.1
7,463	+		HMPREF1078_RS07410	0.52	-1.8
7,464	-		HMPREF1078_RS07410	0.52	-1.0
7,493	+		HMPREF1078_RS07410	0.54	-0.2
7,494	-		HMPREF1078_RS07410	0.55	+1.4
7,540	+		HMPREF1078_RS07410	0.58	-2.7
7,747	+		HMPREF1078_RS07410	0.74	-1.4
7,753	+		HMPREF1078_RS07410	0.75	-1.0
7,754	-		HMPREF1078_RS07410	0.75	-0.4
7,810	+		HMPREF1078_RS07410	0.79	-0.8
7,811	-		HMPREF1078_RS07410	0.79	+0.2
7,811	-		HMPREF1078_RS07410	0.79	+0.4
7,851	+		HMPREF1078_RS07410	0.82	-0.7
7,876	+		HMPREF1078_RS07410	0.84	+0.1
7,876	+		HMPREF1078_RS07410	0.84	+0.0
7,877	-		HMPREF1078_RS07410	0.84	-1.9
7,877	-		HMPREF1078_RS07410	0.84	-0.6
7,878	+		HMPREF1078_RS07410	0.84	-0.9
7,879	-		HMPREF1078_RS07410	0.84	-0.2
7,951	-		HMPREF1078_RS07410	0.90	-2.2
7,959	+				+1.1
7,959	+				+2.1
7,960	-				-1.4
7,965	+				-3.1
7,984	+				+0.4
8,004	+				-0.9
8,019	+				-0.7
8,020	-				+0.8
8,051	+				-1.2
8,077	-				+0.3
8,077	-				+0.4
8,095	-				+0.1
8,109	-				-0.6
8,110	+				-0.4
8,140	+				-0.3
8,141	-				+1.9
8,210	+		HMPREF1078_RS19850	0.36	-0.3
8,211	-		HMPREF1078_RS19850	0.37	-0.7
8,211	-		HMPREF1078_RS19850	0.37	+0.5
8,211	-		HMPREF1078_RS19850	0.37	+0.2
8,211	-		HMPREF1078_RS19850	0.37	+0.3
8,233	-		HMPREF1078_RS19850	0.49	+0.1
8,378	+				+1.0
8,419	+				-0.9
8,420	-				+0.5
8,423	-				+0.3
8,423	-				-0.4
8,498	+				-0.4
8,499	-				+2.2
8,499	-				+0.8
8,506	-				-0.3
8,518	+				+0.5
8,550	-				-0.2
8,555	+				+0.4
8,556	-				-0.2
8,556	-				+1.3
8,578	+				-1.3
8,578	+				-1.3
8,579	-				+1.9
8,579	-				+1.1
8,579	-				+1.0
8,579	-				-0.7
8,588	-				-1.8
8,588	-				-0.1
8,595	+				-1.0
8,599	+				+0.1
8,599	+				+1.1
8,600	-				+0.9
8,632	-				-0.9
8,632	-				-0.2
8,632	-				+0.3
8,634	+				+0.7
8,637	+				-1.4
8,637	+				+0.1
8,638	-				-0.4
8,725	-				-0.7
8,734	+				+1.2
8,801	-				+1.8
8,801	-				+0.3
8,850	+		HMPREF1078_RS07420	0.12	-0.7
8,850	+		HMPREF1078_RS07420	0.12	-0.9
8,850	+		HMPREF1078_RS07420	0.12	-0.1
8,880	-		HMPREF1078_RS07420	0.13	-0.4
8,883	+		HMPREF1078_RS07420	0.14	+2.6
8,951	-		HMPREF1078_RS07420	0.18	+0.8
8,982	+		HMPREF1078_RS07420	0.19	+0.6
9,067	+		HMPREF1078_RS07420	0.24	-0.8
9,068	-		HMPREF1078_RS07420	0.25	-0.7
9,068	-		HMPREF1078_RS07420	0.25	+0.4
9,068	-		HMPREF1078_RS07420	0.25	+0.3
9,068	-		HMPREF1078_RS07420	0.25	-2.1
9,068	-		HMPREF1078_RS07420	0.25	+0.5
9,068	-		HMPREF1078_RS07420	0.25	+0.1
9,072	+		HMPREF1078_RS07420	0.25	+0.6
9,072	+		HMPREF1078_RS07420	0.25	-0.9
9,072	+		HMPREF1078_RS07420	0.25	+0.1
9,072	+		HMPREF1078_RS07420	0.25	+0.0
9,073	-		HMPREF1078_RS07420	0.25	-0.6