Experiment: Xylan from corncob 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07000 and HMPREF1078_RS07005 are separated by 51 nucleotides HMPREF1078_RS07005 and HMPREF1078_RS07010 are separated by 115 nucleotides
HMPREF1078_RS07000: HMPREF1078_RS07000 - FAD-dependent oxidoreductase, at 809,871 to 812,873
_RS07000
HMPREF1078_RS07005: HMPREF1078_RS07005 - FAD-dependent oxidoreductase, at 812,925 to 814,925
_RS07005
HMPREF1078_RS07010: HMPREF1078_RS07010 - RagB/SusD family nutrient uptake outer membrane protein, at 815,041 to 816,879
_RS07010
Position (kb) 812
813
814
815 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 811.926 kb on + strand, within HMPREF1078_RS07000 at 812.003 kb on - strand, within HMPREF1078_RS07000 at 812.070 kb on + strand, within HMPREF1078_RS07000 at 812.122 kb on + strand, within HMPREF1078_RS07000 at 812.123 kb on - strand, within HMPREF1078_RS07000 at 812.123 kb on - strand, within HMPREF1078_RS07000 at 812.123 kb on - strand, within HMPREF1078_RS07000 at 812.143 kb on - strand, within HMPREF1078_RS07000 at 812.153 kb on + strand, within HMPREF1078_RS07000 at 812.154 kb on - strand, within HMPREF1078_RS07000 at 812.154 kb on - strand, within HMPREF1078_RS07000 at 812.253 kb on + strand, within HMPREF1078_RS07000 at 812.259 kb on - strand, within HMPREF1078_RS07000 at 812.261 kb on - strand, within HMPREF1078_RS07000 at 812.294 kb on + strand, within HMPREF1078_RS07000 at 812.311 kb on - strand, within HMPREF1078_RS07000 at 812.436 kb on + strand, within HMPREF1078_RS07000 at 812.436 kb on + strand, within HMPREF1078_RS07000 at 812.440 kb on + strand, within HMPREF1078_RS07000 at 812.441 kb on - strand, within HMPREF1078_RS07000 at 812.441 kb on - strand, within HMPREF1078_RS07000 at 812.460 kb on + strand, within HMPREF1078_RS07000 at 812.500 kb on - strand, within HMPREF1078_RS07000 at 812.501 kb on + strand, within HMPREF1078_RS07000 at 812.585 kb on - strand at 812.601 kb on + strand at 812.602 kb on - strand at 812.624 kb on + strand at 812.624 kb on + strand at 812.624 kb on + strand at 812.625 kb on - strand at 812.625 kb on - strand at 812.626 kb on + strand at 812.716 kb on - strand at 812.739 kb on - strand at 812.814 kb on + strand at 812.868 kb on - strand at 812.868 kb on - strand at 812.877 kb on - strand at 812.877 kb on - strand at 812.877 kb on - strand at 812.910 kb on - strand at 812.940 kb on + strand at 812.940 kb on + strand at 812.941 kb on - strand at 812.945 kb on + strand at 812.949 kb on - strand at 812.996 kb on + strand at 813.028 kb on + strand at 813.028 kb on + strand at 813.028 kb on + strand at 813.029 kb on - strand at 813.037 kb on - strand at 813.078 kb on + strand at 813.079 kb on - strand at 813.079 kb on - strand at 813.079 kb on - strand at 813.158 kb on - strand, within HMPREF1078_RS07005 at 813.173 kb on - strand, within HMPREF1078_RS07005 at 813.176 kb on + strand, within HMPREF1078_RS07005 at 813.254 kb on + strand, within HMPREF1078_RS07005 at 813.325 kb on - strand, within HMPREF1078_RS07005 at 813.387 kb on + strand, within HMPREF1078_RS07005 at 813.500 kb on + strand, within HMPREF1078_RS07005 at 813.500 kb on + strand, within HMPREF1078_RS07005 at 813.519 kb on + strand, within HMPREF1078_RS07005 at 813.520 kb on - strand, within HMPREF1078_RS07005 at 813.536 kb on + strand, within HMPREF1078_RS07005 at 813.561 kb on - strand, within HMPREF1078_RS07005 at 813.601 kb on + strand, within HMPREF1078_RS07005 at 813.625 kb on - strand, within HMPREF1078_RS07005 at 813.644 kb on + strand, within HMPREF1078_RS07005 at 813.657 kb on - strand, within HMPREF1078_RS07005 at 813.737 kb on + strand, within HMPREF1078_RS07005 at 813.740 kb on - strand, within HMPREF1078_RS07005 at 813.772 kb on + strand, within HMPREF1078_RS07005 at 813.772 kb on + strand, within HMPREF1078_RS07005 at 813.773 kb on - strand, within HMPREF1078_RS07005 at 813.901 kb on + strand, within HMPREF1078_RS07005 at 813.901 kb on + strand, within HMPREF1078_RS07005 at 813.906 kb on + strand, within HMPREF1078_RS07005 at 813.907 kb on - strand, within HMPREF1078_RS07005 at 813.907 kb on - strand, within HMPREF1078_RS07005 at 813.941 kb on - strand, within HMPREF1078_RS07005 at 813.941 kb on - strand, within HMPREF1078_RS07005 at 813.941 kb on - strand, within HMPREF1078_RS07005 at 813.977 kb on + strand, within HMPREF1078_RS07005 at 813.987 kb on + strand, within HMPREF1078_RS07005 at 814.012 kb on + strand, within HMPREF1078_RS07005 at 814.017 kb on - strand, within HMPREF1078_RS07005 at 814.017 kb on - strand, within HMPREF1078_RS07005 at 814.017 kb on - strand, within HMPREF1078_RS07005 at 814.017 kb on - strand, within HMPREF1078_RS07005 at 814.020 kb on - strand, within HMPREF1078_RS07005 at 814.032 kb on - strand, within HMPREF1078_RS07005 at 814.040 kb on + strand, within HMPREF1078_RS07005 at 814.044 kb on + strand, within HMPREF1078_RS07005 at 814.052 kb on - strand, within HMPREF1078_RS07005 at 814.055 kb on + strand, within HMPREF1078_RS07005 at 814.055 kb on + strand, within HMPREF1078_RS07005 at 814.056 kb on - strand, within HMPREF1078_RS07005 at 814.056 kb on - strand, within HMPREF1078_RS07005 at 814.059 kb on + strand, within HMPREF1078_RS07005 at 814.059 kb on + strand, within HMPREF1078_RS07005 at 814.059 kb on + strand, within HMPREF1078_RS07005 at 814.095 kb on + strand, within HMPREF1078_RS07005 at 814.102 kb on + strand, within HMPREF1078_RS07005 at 814.102 kb on + strand, within HMPREF1078_RS07005 at 814.117 kb on + strand, within HMPREF1078_RS07005 at 814.184 kb on - strand, within HMPREF1078_RS07005 at 814.191 kb on + strand, within HMPREF1078_RS07005 at 814.191 kb on + strand, within HMPREF1078_RS07005 at 814.229 kb on + strand, within HMPREF1078_RS07005 at 814.229 kb on + strand, within HMPREF1078_RS07005 at 814.275 kb on + strand, within HMPREF1078_RS07005 at 814.279 kb on + strand, within HMPREF1078_RS07005 at 814.279 kb on + strand, within HMPREF1078_RS07005 at 814.411 kb on + strand, within HMPREF1078_RS07005 at 814.411 kb on + strand, within HMPREF1078_RS07005 at 814.412 kb on - strand, within HMPREF1078_RS07005 at 814.446 kb on + strand, within HMPREF1078_RS07005 at 814.446 kb on + strand, within HMPREF1078_RS07005 at 814.447 kb on - strand, within HMPREF1078_RS07005 at 814.447 kb on - strand, within HMPREF1078_RS07005 at 814.447 kb on - strand, within HMPREF1078_RS07005 at 814.537 kb on + strand, within HMPREF1078_RS07005 at 814.540 kb on + strand, within HMPREF1078_RS07005 at 814.541 kb on - strand, within HMPREF1078_RS07005 at 814.552 kb on - strand, within HMPREF1078_RS07005 at 814.629 kb on - strand, within HMPREF1078_RS07005 at 814.630 kb on + strand, within HMPREF1078_RS07005 at 814.631 kb on - strand, within HMPREF1078_RS07005 at 814.631 kb on - strand, within HMPREF1078_RS07005 at 814.631 kb on - strand, within HMPREF1078_RS07005 at 814.681 kb on + strand, within HMPREF1078_RS07005 at 814.718 kb on + strand, within HMPREF1078_RS07005 at 814.719 kb on - strand, within HMPREF1078_RS07005 at 814.719 kb on - strand, within HMPREF1078_RS07005 at 814.724 kb on + strand, within HMPREF1078_RS07005 at 814.731 kb on + strand at 814.767 kb on - strand at 814.794 kb on + strand at 814.794 kb on + strand at 814.819 kb on + strand at 814.853 kb on + strand at 814.884 kb on + strand at 814.892 kb on + strand at 814.902 kb on - strand at 814.912 kb on - strand at 814.917 kb on - strand at 814.934 kb on + strand at 815.145 kb on + strand at 815.146 kb on - strand at 815.146 kb on - strand at 815.151 kb on + strand at 815.152 kb on - strand at 815.152 kb on - strand at 815.152 kb on - strand at 815.153 kb on + strand at 815.153 kb on + strand at 815.154 kb on - strand at 815.169 kb on + strand at 815.225 kb on + strand, within HMPREF1078_RS07010 at 815.226 kb on - strand, within HMPREF1078_RS07010 at 815.257 kb on + strand, within HMPREF1078_RS07010 at 815.258 kb on - strand, within HMPREF1078_RS07010 at 815.345 kb on + strand, within HMPREF1078_RS07010 at 815.346 kb on - strand, within HMPREF1078_RS07010 at 815.346 kb on - strand, within HMPREF1078_RS07010 at 815.480 kb on - strand, within HMPREF1078_RS07010 at 815.559 kb on + strand, within HMPREF1078_RS07010 at 815.559 kb on + strand, within HMPREF1078_RS07010 at 815.559 kb on + strand, within HMPREF1078_RS07010 at 815.559 kb on + strand, within HMPREF1078_RS07010 at 815.560 kb on - strand, within HMPREF1078_RS07010 at 815.560 kb on - strand, within HMPREF1078_RS07010 at 815.591 kb on + strand, within HMPREF1078_RS07010 at 815.617 kb on + strand, within HMPREF1078_RS07010 at 815.617 kb on + strand, within HMPREF1078_RS07010 at 815.617 kb on + strand, within HMPREF1078_RS07010 at 815.617 kb on + strand, within HMPREF1078_RS07010 at 815.617 kb on + strand, within HMPREF1078_RS07010 at 815.618 kb on - strand, within HMPREF1078_RS07010 at 815.618 kb on - strand, within HMPREF1078_RS07010 at 815.618 kb on - strand, within HMPREF1078_RS07010 at 815.618 kb on - strand, within HMPREF1078_RS07010 at 815.621 kb on + strand, within HMPREF1078_RS07010 at 815.651 kb on + strand, within HMPREF1078_RS07010 at 815.652 kb on - strand, within HMPREF1078_RS07010 at 815.708 kb on + strand, within HMPREF1078_RS07010 at 815.709 kb on - strand, within HMPREF1078_RS07010 at 815.774 kb on + strand, within HMPREF1078_RS07010 at 815.774 kb on + strand, within HMPREF1078_RS07010 at 815.775 kb on - strand, within HMPREF1078_RS07010 at 815.776 kb on + strand, within HMPREF1078_RS07010 at 815.781 kb on + strand, within HMPREF1078_RS07010 at 815.816 kb on - strand, within HMPREF1078_RS07010 at 815.816 kb on - strand, within HMPREF1078_RS07010 at 815.825 kb on + strand, within HMPREF1078_RS07010 at 815.826 kb on - strand, within HMPREF1078_RS07010 at 815.883 kb on - strand, within HMPREF1078_RS07010 at 815.883 kb on - strand, within HMPREF1078_RS07010 at 815.894 kb on + strand, within HMPREF1078_RS07010
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corncob 2.5 mg/mL (C) remove 811,926 + HMPREF1078_RS07000 0.68 -0.7 812,003 - HMPREF1078_RS07000 0.71 +0.3 812,070 + HMPREF1078_RS07000 0.73 +2.0 812,122 + HMPREF1078_RS07000 0.75 +0.2 812,123 - HMPREF1078_RS07000 0.75 +1.6 812,123 - HMPREF1078_RS07000 0.75 -0.4 812,123 - HMPREF1078_RS07000 0.75 -1.8 812,143 - HMPREF1078_RS07000 0.76 -1.3 812,153 + HMPREF1078_RS07000 0.76 +0.8 812,154 - HMPREF1078_RS07000 0.76 +0.4 812,154 - HMPREF1078_RS07000 0.76 -0.8 812,253 + HMPREF1078_RS07000 0.79 +0.2 812,259 - HMPREF1078_RS07000 0.80 +0.2 812,261 - HMPREF1078_RS07000 0.80 +0.7 812,294 + HMPREF1078_RS07000 0.81 -0.7 812,311 - HMPREF1078_RS07000 0.81 -0.5 812,436 + HMPREF1078_RS07000 0.85 -0.2 812,436 + HMPREF1078_RS07000 0.85 -3.6 812,440 + HMPREF1078_RS07000 0.86 +0.3 812,441 - HMPREF1078_RS07000 0.86 -1.2 812,441 - HMPREF1078_RS07000 0.86 +0.5 812,460 + HMPREF1078_RS07000 0.86 -0.1 812,500 - HMPREF1078_RS07000 0.88 -1.8 812,501 + HMPREF1078_RS07000 0.88 -0.4 812,585 - +1.5 812,601 + +0.4 812,602 - -1.1 812,624 + -0.5 812,624 + -1.0 812,624 + +0.5 812,625 - +1.1 812,625 - -1.4 812,626 + +0.8 812,716 - +0.1 812,739 - -1.2 812,814 + -3.4 812,868 - +0.1 812,868 - -0.5 812,877 - -0.6 812,877 - +0.7 812,877 - -0.8 812,910 - +1.5 812,940 + -0.1 812,940 + +0.8 812,941 - -0.6 812,945 + -0.6 812,949 - +0.7 812,996 + +1.3 813,028 + +0.9 813,028 + -0.6 813,028 + +0.0 813,029 - -0.9 813,037 - +0.7 813,078 + -0.1 813,079 - -0.9 813,079 - +0.6 813,079 - -0.8 813,158 - HMPREF1078_RS07005 0.12 +0.8 813,173 - HMPREF1078_RS07005 0.12 -1.5 813,176 + HMPREF1078_RS07005 0.13 -0.1 813,254 + HMPREF1078_RS07005 0.16 -0.0 813,325 - HMPREF1078_RS07005 0.20 -0.9 813,387 + HMPREF1078_RS07005 0.23 -0.2 813,500 + HMPREF1078_RS07005 0.29 -0.8 813,500 + HMPREF1078_RS07005 0.29 +0.9 813,519 + HMPREF1078_RS07005 0.30 -2.2 813,520 - HMPREF1078_RS07005 0.30 +0.0 813,536 + HMPREF1078_RS07005 0.31 +0.3 813,561 - HMPREF1078_RS07005 0.32 -3.5 813,601 + HMPREF1078_RS07005 0.34 -0.1 813,625 - HMPREF1078_RS07005 0.35 -0.0 813,644 + HMPREF1078_RS07005 0.36 -0.9 813,657 - HMPREF1078_RS07005 0.37 -0.4 813,737 + HMPREF1078_RS07005 0.41 +0.8 813,740 - HMPREF1078_RS07005 0.41 -1.3 813,772 + HMPREF1078_RS07005 0.42 -1.3 813,772 + HMPREF1078_RS07005 0.42 -0.9 813,773 - HMPREF1078_RS07005 0.42 +1.7 813,901 + HMPREF1078_RS07005 0.49 +0.5 813,901 + HMPREF1078_RS07005 0.49 -1.1 813,906 + HMPREF1078_RS07005 0.49 -0.8 813,907 - HMPREF1078_RS07005 0.49 +0.4 813,907 - HMPREF1078_RS07005 0.49 +1.1 813,941 - HMPREF1078_RS07005 0.51 -1.6 813,941 - HMPREF1078_RS07005 0.51 +1.6 813,941 - HMPREF1078_RS07005 0.51 +0.3 813,977 + HMPREF1078_RS07005 0.53 -1.4 813,987 + HMPREF1078_RS07005 0.53 -0.9 814,012 + HMPREF1078_RS07005 0.54 +0.9 814,017 - HMPREF1078_RS07005 0.55 +0.7 814,017 - HMPREF1078_RS07005 0.55 -1.8 814,017 - HMPREF1078_RS07005 0.55 -1.1 814,017 - HMPREF1078_RS07005 0.55 -0.6 814,020 - HMPREF1078_RS07005 0.55 +1.7 814,032 - HMPREF1078_RS07005 0.55 -1.8 814,040 + HMPREF1078_RS07005 0.56 -0.1 814,044 + HMPREF1078_RS07005 0.56 -1.1 814,052 - HMPREF1078_RS07005 0.56 -1.4 814,055 + HMPREF1078_RS07005 0.56 -0.1 814,055 + HMPREF1078_RS07005 0.56 -1.1 814,056 - HMPREF1078_RS07005 0.57 +0.7 814,056 - HMPREF1078_RS07005 0.57 +1.2 814,059 + HMPREF1078_RS07005 0.57 -1.5 814,059 + HMPREF1078_RS07005 0.57 -0.7 814,059 + HMPREF1078_RS07005 0.57 +0.7 814,095 + HMPREF1078_RS07005 0.58 -1.4 814,102 + HMPREF1078_RS07005 0.59 -1.6 814,102 + HMPREF1078_RS07005 0.59 +1.8 814,117 + HMPREF1078_RS07005 0.60 +0.2 814,184 - HMPREF1078_RS07005 0.63 -0.8 814,191 + HMPREF1078_RS07005 0.63 -0.8 814,191 + HMPREF1078_RS07005 0.63 +0.4 814,229 + HMPREF1078_RS07005 0.65 -1.4 814,229 + HMPREF1078_RS07005 0.65 -1.1 814,275 + HMPREF1078_RS07005 0.67 -2.3 814,279 + HMPREF1078_RS07005 0.68 +0.6 814,279 + HMPREF1078_RS07005 0.68 -0.7 814,411 + HMPREF1078_RS07005 0.74 +0.5 814,411 + HMPREF1078_RS07005 0.74 +1.3 814,412 - HMPREF1078_RS07005 0.74 -0.6 814,446 + HMPREF1078_RS07005 0.76 +0.1 814,446 + HMPREF1078_RS07005 0.76 -2.1 814,447 - HMPREF1078_RS07005 0.76 +1.4 814,447 - HMPREF1078_RS07005 0.76 -0.3 814,447 - HMPREF1078_RS07005 0.76 +0.7 814,537 + HMPREF1078_RS07005 0.81 -1.0 814,540 + HMPREF1078_RS07005 0.81 -0.4 814,541 - HMPREF1078_RS07005 0.81 -0.1 814,552 - HMPREF1078_RS07005 0.81 -0.1 814,629 - HMPREF1078_RS07005 0.85 -1.4 814,630 + HMPREF1078_RS07005 0.85 +0.7 814,631 - HMPREF1078_RS07005 0.85 +0.8 814,631 - HMPREF1078_RS07005 0.85 -0.1 814,631 - HMPREF1078_RS07005 0.85 -0.8 814,681 + HMPREF1078_RS07005 0.88 -0.8 814,718 + HMPREF1078_RS07005 0.90 -0.1 814,719 - HMPREF1078_RS07005 0.90 +0.1 814,719 - HMPREF1078_RS07005 0.90 -2.1 814,724 + HMPREF1078_RS07005 0.90 -1.2 814,731 + -0.3 814,767 - +1.2 814,794 + -0.4 814,794 + -0.9 814,819 + +0.3 814,853 + +0.9 814,884 + +0.4 814,892 + -2.4 814,902 - +0.1 814,912 - +0.2 814,917 - -1.0 814,934 + +0.8 815,145 + -2.3 815,146 - -0.3 815,146 - -1.3 815,151 + +0.1 815,152 - -0.3 815,152 - +0.8 815,152 - +0.0 815,153 + -0.9 815,153 + -0.6 815,154 - +0.2 815,169 + +1.8 815,225 + HMPREF1078_RS07010 0.10 +0.1 815,226 - HMPREF1078_RS07010 0.10 -0.6 815,257 + HMPREF1078_RS07010 0.12 +0.5 815,258 - HMPREF1078_RS07010 0.12 -0.2 815,345 + HMPREF1078_RS07010 0.17 -1.0 815,346 - HMPREF1078_RS07010 0.17 +0.2 815,346 - HMPREF1078_RS07010 0.17 -0.5 815,480 - HMPREF1078_RS07010 0.24 -0.5 815,559 + HMPREF1078_RS07010 0.28 -0.4 815,559 + HMPREF1078_RS07010 0.28 +0.5 815,559 + HMPREF1078_RS07010 0.28 -0.7 815,559 + HMPREF1078_RS07010 0.28 +1.9 815,560 - HMPREF1078_RS07010 0.28 -0.1 815,560 - HMPREF1078_RS07010 0.28 -0.5 815,591 + HMPREF1078_RS07010 0.30 -2.3 815,617 + HMPREF1078_RS07010 0.31 -0.8 815,617 + HMPREF1078_RS07010 0.31 -1.7 815,617 + HMPREF1078_RS07010 0.31 +0.1 815,617 + HMPREF1078_RS07010 0.31 +0.0 815,617 + HMPREF1078_RS07010 0.31 -0.1 815,618 - HMPREF1078_RS07010 0.31 +0.7 815,618 - HMPREF1078_RS07010 0.31 +0.3 815,618 - HMPREF1078_RS07010 0.31 +0.9 815,618 - HMPREF1078_RS07010 0.31 -0.1 815,621 + HMPREF1078_RS07010 0.32 +0.8 815,651 + HMPREF1078_RS07010 0.33 -0.3 815,652 - HMPREF1078_RS07010 0.33 +0.0 815,708 + HMPREF1078_RS07010 0.36 +0.0 815,709 - HMPREF1078_RS07010 0.36 +1.0 815,774 + HMPREF1078_RS07010 0.40 +0.3 815,774 + HMPREF1078_RS07010 0.40 -0.3 815,775 - HMPREF1078_RS07010 0.40 -0.5 815,776 + HMPREF1078_RS07010 0.40 -1.5 815,781 + HMPREF1078_RS07010 0.40 +2.1 815,816 - HMPREF1078_RS07010 0.42 -0.3 815,816 - HMPREF1078_RS07010 0.42 -0.5 815,825 + HMPREF1078_RS07010 0.43 -2.6 815,826 - HMPREF1078_RS07010 0.43 +0.5 815,883 - HMPREF1078_RS07010 0.46 -0.5 815,883 - HMPREF1078_RS07010 0.46 +0.3 815,894 + HMPREF1078_RS07010 0.46 +0.1
Or see this region's nucleotide sequence