Experiment: Xylan from corncob 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04470 and HMPREF1078_RS04475 are separated by 73 nucleotides HMPREF1078_RS04475 and HMPREF1078_RS04480 are separated by 15 nucleotides HMPREF1078_RS04480 and HMPREF1078_RS04485 are separated by 7 nucleotides HMPREF1078_RS04485 and HMPREF1078_RS04490 are separated by 126 nucleotides
HMPREF1078_RS04470: HMPREF1078_RS04470 - DUF4248 domain-containing protein, at 128,917 to 129,141
_RS04470
HMPREF1078_RS04475: HMPREF1078_RS04475 - glucosaminidase domain-containing protein, at 129,215 to 129,715
_RS04475
HMPREF1078_RS04480: HMPREF1078_RS04480 - hypothetical protein, at 129,731 to 130,078
_RS04480
HMPREF1078_RS04485: HMPREF1078_RS04485 - T9SS type A sorting domain-containing protein, at 130,086 to 130,415
_RS04485
HMPREF1078_RS04490: HMPREF1078_RS04490 - ribonuclease Z, at 130,542 to 131,456
_RS04490
Position (kb) 130
131 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 129.112 kb on + strand, within HMPREF1078_RS04470 at 129.113 kb on - strand, within HMPREF1078_RS04470 at 129.181 kb on - strand at 129.211 kb on + strand at 129.211 kb on + strand at 129.211 kb on + strand at 129.212 kb on - strand at 129.213 kb on + strand at 129.213 kb on + strand at 129.238 kb on - strand at 129.242 kb on - strand at 129.242 kb on - strand at 129.242 kb on - strand at 129.383 kb on + strand, within HMPREF1078_RS04475 at 129.462 kb on - strand, within HMPREF1078_RS04475 at 129.581 kb on + strand, within HMPREF1078_RS04475 at 129.584 kb on - strand, within HMPREF1078_RS04475 at 129.584 kb on - strand, within HMPREF1078_RS04475 at 129.699 kb on + strand at 129.962 kb on + strand, within HMPREF1078_RS04480 at 129.962 kb on + strand, within HMPREF1078_RS04480 at 129.962 kb on + strand, within HMPREF1078_RS04480 at 129.962 kb on + strand, within HMPREF1078_RS04480 at 129.963 kb on - strand, within HMPREF1078_RS04480 at 129.963 kb on - strand, within HMPREF1078_RS04480 at 129.963 kb on - strand, within HMPREF1078_RS04480 at 129.964 kb on + strand, within HMPREF1078_RS04480 at 129.965 kb on - strand, within HMPREF1078_RS04480 at 129.965 kb on - strand, within HMPREF1078_RS04480 at 130.046 kb on + strand at 130.132 kb on + strand, within HMPREF1078_RS04485 at 130.132 kb on + strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.133 kb on - strand, within HMPREF1078_RS04485 at 130.135 kb on + strand, within HMPREF1078_RS04485 at 130.135 kb on + strand, within HMPREF1078_RS04485 at 130.157 kb on + strand, within HMPREF1078_RS04485 at 130.157 kb on + strand, within HMPREF1078_RS04485 at 130.157 kb on + strand, within HMPREF1078_RS04485 at 130.158 kb on - strand, within HMPREF1078_RS04485 at 130.158 kb on - strand, within HMPREF1078_RS04485 at 130.158 kb on - strand, within HMPREF1078_RS04485 at 130.206 kb on + strand, within HMPREF1078_RS04485 at 130.206 kb on + strand, within HMPREF1078_RS04485 at 130.270 kb on + strand, within HMPREF1078_RS04485 at 130.271 kb on - strand, within HMPREF1078_RS04485 at 130.401 kb on - strand at 130.415 kb on + strand at 130.416 kb on - strand at 130.418 kb on - strand at 130.418 kb on - strand at 130.436 kb on - strand at 130.464 kb on + strand at 130.478 kb on + strand at 130.631 kb on - strand at 130.810 kb on + strand, within HMPREF1078_RS04490 at 130.811 kb on - strand, within HMPREF1078_RS04490 at 130.811 kb on - strand, within HMPREF1078_RS04490 at 130.904 kb on - strand, within HMPREF1078_RS04490 at 130.904 kb on - strand, within HMPREF1078_RS04490 at 130.922 kb on + strand, within HMPREF1078_RS04490 at 130.922 kb on + strand, within HMPREF1078_RS04490 at 130.923 kb on - strand, within HMPREF1078_RS04490 at 130.977 kb on - strand, within HMPREF1078_RS04490 at 131.009 kb on - strand, within HMPREF1078_RS04490 at 131.282 kb on + strand, within HMPREF1078_RS04490 at 131.355 kb on - strand, within HMPREF1078_RS04490 at 131.356 kb on + strand, within HMPREF1078_RS04490
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corncob 2.5 mg/mL (C) remove 129,112 + HMPREF1078_RS04470 0.87 -1.2 129,113 - HMPREF1078_RS04470 0.87 -0.3 129,181 - +0.8 129,211 + -0.6 129,211 + +0.7 129,211 + -1.0 129,212 - +0.2 129,213 + -0.3 129,213 + -2.4 129,238 - -2.5 129,242 - -0.3 129,242 - +0.1 129,242 - +0.9 129,383 + HMPREF1078_RS04475 0.34 +0.1 129,462 - HMPREF1078_RS04475 0.49 -2.3 129,581 + HMPREF1078_RS04475 0.73 -0.0 129,584 - HMPREF1078_RS04475 0.74 +0.6 129,584 - HMPREF1078_RS04475 0.74 -0.8 129,699 + -0.5 129,962 + HMPREF1078_RS04480 0.66 +1.5 129,962 + HMPREF1078_RS04480 0.66 +0.8 129,962 + HMPREF1078_RS04480 0.66 -1.1 129,962 + HMPREF1078_RS04480 0.66 +0.1 129,963 - HMPREF1078_RS04480 0.67 +0.3 129,963 - HMPREF1078_RS04480 0.67 -0.0 129,963 - HMPREF1078_RS04480 0.67 -0.6 129,964 + HMPREF1078_RS04480 0.67 -0.5 129,965 - HMPREF1078_RS04480 0.67 +0.3 129,965 - HMPREF1078_RS04480 0.67 -2.1 130,046 + -1.1 130,132 + HMPREF1078_RS04485 0.14 -3.6 130,132 + HMPREF1078_RS04485 0.14 -1.8 130,133 - HMPREF1078_RS04485 0.14 -2.7 130,133 - HMPREF1078_RS04485 0.14 +0.5 130,133 - HMPREF1078_RS04485 0.14 -3.3 130,133 - HMPREF1078_RS04485 0.14 -3.3 130,133 - HMPREF1078_RS04485 0.14 -4.0 130,135 + HMPREF1078_RS04485 0.15 -4.5 130,135 + HMPREF1078_RS04485 0.15 -1.8 130,157 + HMPREF1078_RS04485 0.22 -1.5 130,157 + HMPREF1078_RS04485 0.22 -2.7 130,157 + HMPREF1078_RS04485 0.22 +0.2 130,158 - HMPREF1078_RS04485 0.22 -1.9 130,158 - HMPREF1078_RS04485 0.22 -4.5 130,158 - HMPREF1078_RS04485 0.22 -3.1 130,206 + HMPREF1078_RS04485 0.36 -2.5 130,206 + HMPREF1078_RS04485 0.36 -5.5 130,270 + HMPREF1078_RS04485 0.56 -3.8 130,271 - HMPREF1078_RS04485 0.56 -3.4 130,401 - -3.4 130,415 + -1.1 130,416 - -4.7 130,418 - -0.1 130,418 - -1.2 130,436 - -1.2 130,464 + -2.1 130,478 + -2.7 130,631 - +0.4 130,810 + HMPREF1078_RS04490 0.29 -0.7 130,811 - HMPREF1078_RS04490 0.29 -0.6 130,811 - HMPREF1078_RS04490 0.29 -0.3 130,904 - HMPREF1078_RS04490 0.40 +0.4 130,904 - HMPREF1078_RS04490 0.40 +0.4 130,922 + HMPREF1078_RS04490 0.42 -0.4 130,922 + HMPREF1078_RS04490 0.42 -2.2 130,923 - HMPREF1078_RS04490 0.42 +0.8 130,977 - HMPREF1078_RS04490 0.48 -0.6 131,009 - HMPREF1078_RS04490 0.51 +0.1 131,282 + HMPREF1078_RS04490 0.81 -0.7 131,355 - HMPREF1078_RS04490 0.89 -0.3 131,356 + HMPREF1078_RS04490 0.89 -1.0
Or see this region's nucleotide sequence