Experiment: Xylan from corncob 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03090 and HMPREF1078_RS19720 are separated by 144 nucleotides HMPREF1078_RS19720 and HMPREF1078_RS03095 are separated by 18 nucleotides HMPREF1078_RS03095 and HMPREF1078_RS03100 are separated by 205 nucleotides HMPREF1078_RS03100 and HMPREF1078_RS03105 overlap by 4 nucleotides
HMPREF1078_RS03090: HMPREF1078_RS03090 - helix-turn-helix transcriptional regulator, at 738,644 to 739,102
_RS03090
HMPREF1078_RS19720: HMPREF1078_RS19720 - hypothetical protein, at 739,247 to 739,438
_RS19720
HMPREF1078_RS03095: HMPREF1078_RS03095 - hypothetical protein, at 739,457 to 739,771
_RS03095
HMPREF1078_RS03100: HMPREF1078_RS03100 - hypothetical protein, at 739,977 to 740,180
_RS03100
HMPREF1078_RS03105: HMPREF1078_RS03105 - CHC2 zinc finger domain-containing protein, at 740,177 to 743,455
_RS03105
Position (kb) 739
740
741 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 738.977 kb on + strand, within HMPREF1078_RS03090 at 739.007 kb on + strand, within HMPREF1078_RS03090 at 739.048 kb on + strand, within HMPREF1078_RS03090 at 739.048 kb on + strand, within HMPREF1078_RS03090 at 739.049 kb on - strand, within HMPREF1078_RS03090 at 739.073 kb on + strand at 739.074 kb on - strand at 739.074 kb on - strand at 739.074 kb on - strand at 739.074 kb on - strand at 739.088 kb on + strand at 739.088 kb on + strand at 739.089 kb on - strand at 739.089 kb on - strand at 739.097 kb on - strand at 739.120 kb on + strand at 739.121 kb on - strand at 739.121 kb on - strand at 739.190 kb on - strand at 739.225 kb on - strand at 739.246 kb on + strand at 739.296 kb on + strand, within HMPREF1078_RS19720 at 739.372 kb on + strand, within HMPREF1078_RS19720 at 739.373 kb on - strand, within HMPREF1078_RS19720 at 739.457 kb on - strand at 739.487 kb on - strand at 739.494 kb on - strand, within HMPREF1078_RS03095 at 739.779 kb on - strand at 739.834 kb on - strand at 739.860 kb on + strand at 739.907 kb on - strand at 739.908 kb on + strand at 739.914 kb on + strand at 739.921 kb on + strand at 739.972 kb on + strand at 739.973 kb on - strand at 740.017 kb on - strand, within HMPREF1078_RS03100 at 740.090 kb on + strand, within HMPREF1078_RS03100 at 740.091 kb on - strand, within HMPREF1078_RS03100 at 740.109 kb on - strand, within HMPREF1078_RS03100 at 740.171 kb on + strand at 740.206 kb on - strand at 740.229 kb on + strand at 740.229 kb on + strand at 740.241 kb on - strand at 740.271 kb on - strand at 740.356 kb on + strand at 740.378 kb on - strand at 740.383 kb on + strand at 740.386 kb on - strand at 740.460 kb on - strand at 740.460 kb on - strand at 740.460 kb on - strand at 740.495 kb on - strand at 740.521 kb on - strand, within HMPREF1078_RS03105 at 740.604 kb on - strand, within HMPREF1078_RS03105 at 740.649 kb on + strand, within HMPREF1078_RS03105 at 740.664 kb on - strand, within HMPREF1078_RS03105 at 740.724 kb on - strand, within HMPREF1078_RS03105 at 740.765 kb on + strand, within HMPREF1078_RS03105 at 740.765 kb on + strand, within HMPREF1078_RS03105 at 740.765 kb on + strand, within HMPREF1078_RS03105 at 740.766 kb on - strand, within HMPREF1078_RS03105 at 740.766 kb on - strand, within HMPREF1078_RS03105 at 740.766 kb on - strand, within HMPREF1078_RS03105 at 740.785 kb on + strand, within HMPREF1078_RS03105 at 740.786 kb on - strand, within HMPREF1078_RS03105 at 740.786 kb on - strand, within HMPREF1078_RS03105 at 740.786 kb on - strand, within HMPREF1078_RS03105 at 740.786 kb on - strand, within HMPREF1078_RS03105 at 740.828 kb on + strand, within HMPREF1078_RS03105 at 740.841 kb on - strand, within HMPREF1078_RS03105 at 740.870 kb on + strand, within HMPREF1078_RS03105 at 740.870 kb on + strand, within HMPREF1078_RS03105 at 740.870 kb on + strand, within HMPREF1078_RS03105 at 740.871 kb on - strand, within HMPREF1078_RS03105 at 740.871 kb on - strand, within HMPREF1078_RS03105 at 740.871 kb on - strand, within HMPREF1078_RS03105 at 740.958 kb on - strand, within HMPREF1078_RS03105 at 740.960 kb on + strand, within HMPREF1078_RS03105 at 740.960 kb on + strand, within HMPREF1078_RS03105 at 740.961 kb on - strand, within HMPREF1078_RS03105 at 740.961 kb on - strand, within HMPREF1078_RS03105 at 740.962 kb on + strand, within HMPREF1078_RS03105 at 740.963 kb on - strand, within HMPREF1078_RS03105 at 740.963 kb on - strand, within HMPREF1078_RS03105 at 740.963 kb on - strand, within HMPREF1078_RS03105 at 741.024 kb on + strand, within HMPREF1078_RS03105 at 741.077 kb on + strand, within HMPREF1078_RS03105 at 741.077 kb on + strand, within HMPREF1078_RS03105 at 741.078 kb on - strand, within HMPREF1078_RS03105 at 741.078 kb on - strand, within HMPREF1078_RS03105 at 741.078 kb on - strand, within HMPREF1078_RS03105 at 741.081 kb on + strand, within HMPREF1078_RS03105 at 741.081 kb on + strand, within HMPREF1078_RS03105 at 741.082 kb on - strand, within HMPREF1078_RS03105 at 741.082 kb on - strand, within HMPREF1078_RS03105
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corncob 2.5 mg/mL (C) remove 738,977 + HMPREF1078_RS03090 0.73 -4.5 739,007 + HMPREF1078_RS03090 0.79 -4.0 739,048 + HMPREF1078_RS03090 0.88 -3.7 739,048 + HMPREF1078_RS03090 0.88 -4.9 739,049 - HMPREF1078_RS03090 0.88 -2.3 739,073 + -4.8 739,074 - -1.8 739,074 - -5.0 739,074 - -4.2 739,074 - -4.4 739,088 + -2.3 739,088 + -2.7 739,089 - -0.6 739,089 - -2.6 739,097 - -4.4 739,120 + -3.9 739,121 - -1.5 739,121 - +1.3 739,190 - -0.2 739,225 - -2.6 739,246 + -0.9 739,296 + HMPREF1078_RS19720 0.26 +0.8 739,372 + HMPREF1078_RS19720 0.65 +0.1 739,373 - HMPREF1078_RS19720 0.66 -0.3 739,457 - +0.5 739,487 - -0.8 739,494 - HMPREF1078_RS03095 0.12 +1.2 739,779 - +0.2 739,834 - -1.5 739,860 + -0.4 739,907 - -1.8 739,908 + -0.4 739,914 + +1.1 739,921 + -1.2 739,972 + -2.1 739,973 - +0.5 740,017 - HMPREF1078_RS03100 0.20 +0.1 740,090 + HMPREF1078_RS03100 0.55 -0.7 740,091 - HMPREF1078_RS03100 0.56 -2.3 740,109 - HMPREF1078_RS03100 0.65 -1.6 740,171 + -1.8 740,206 - -0.1 740,229 + -0.5 740,229 + -0.4 740,241 - +1.0 740,271 - -0.4 740,356 + -1.2 740,378 - +1.2 740,383 + +0.8 740,386 - +2.0 740,460 - -0.3 740,460 - +1.1 740,460 - -0.4 740,495 - +0.6 740,521 - HMPREF1078_RS03105 0.10 -0.9 740,604 - HMPREF1078_RS03105 0.13 -0.0 740,649 + HMPREF1078_RS03105 0.14 +0.5 740,664 - HMPREF1078_RS03105 0.15 +1.0 740,724 - HMPREF1078_RS03105 0.17 -1.0 740,765 + HMPREF1078_RS03105 0.18 -0.0 740,765 + HMPREF1078_RS03105 0.18 -1.5 740,765 + HMPREF1078_RS03105 0.18 +1.4 740,766 - HMPREF1078_RS03105 0.18 -1.9 740,766 - HMPREF1078_RS03105 0.18 -0.4 740,766 - HMPREF1078_RS03105 0.18 -0.9 740,785 + HMPREF1078_RS03105 0.19 +3.4 740,786 - HMPREF1078_RS03105 0.19 -1.0 740,786 - HMPREF1078_RS03105 0.19 -0.7 740,786 - HMPREF1078_RS03105 0.19 -0.0 740,786 - HMPREF1078_RS03105 0.19 -0.2 740,828 + HMPREF1078_RS03105 0.20 +0.5 740,841 - HMPREF1078_RS03105 0.20 +0.5 740,870 + HMPREF1078_RS03105 0.21 -1.1 740,870 + HMPREF1078_RS03105 0.21 +0.7 740,870 + HMPREF1078_RS03105 0.21 -0.4 740,871 - HMPREF1078_RS03105 0.21 +0.4 740,871 - HMPREF1078_RS03105 0.21 +0.3 740,871 - HMPREF1078_RS03105 0.21 -2.1 740,958 - HMPREF1078_RS03105 0.24 +0.7 740,960 + HMPREF1078_RS03105 0.24 -0.2 740,960 + HMPREF1078_RS03105 0.24 -0.4 740,961 - HMPREF1078_RS03105 0.24 +0.6 740,961 - HMPREF1078_RS03105 0.24 -0.1 740,962 + HMPREF1078_RS03105 0.24 +2.2 740,963 - HMPREF1078_RS03105 0.24 -0.4 740,963 - HMPREF1078_RS03105 0.24 -1.3 740,963 - HMPREF1078_RS03105 0.24 -0.2 741,024 + HMPREF1078_RS03105 0.26 -0.9 741,077 + HMPREF1078_RS03105 0.27 -0.8 741,077 + HMPREF1078_RS03105 0.27 -0.4 741,078 - HMPREF1078_RS03105 0.27 +1.0 741,078 - HMPREF1078_RS03105 0.27 -1.3 741,078 - HMPREF1078_RS03105 0.27 -1.0 741,081 + HMPREF1078_RS03105 0.28 -0.0 741,081 + HMPREF1078_RS03105 0.28 +0.3 741,082 - HMPREF1078_RS03105 0.28 -3.0 741,082 - HMPREF1078_RS03105 0.28 +2.7
Or see this region's nucleotide sequence