Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS02450

Experiment: Xylan from corncob 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS02445 and HMPREF1078_RS02450 overlap by 4 nucleotidesHMPREF1078_RS02450 and HMPREF1078_RS02455 are separated by 57 nucleotides HMPREF1078_RS02445: HMPREF1078_RS02445 - histidinol-phosphate transaminase, at 600,178 to 601,209 _RS02445 HMPREF1078_RS02450: HMPREF1078_RS02450 - histidinol dehydrogenase, at 601,206 to 602,495 _RS02450 HMPREF1078_RS02455: HMPREF1078_RS02455 - ATP phosphoribosyltransferase, at 602,553 to 603,404 _RS02455 Position (kb) 601 602 603Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 600.286 kb on - strand, within HMPREF1078_RS02445at 600.288 kb on + strand, within HMPREF1078_RS02445at 600.289 kb on - strand, within HMPREF1078_RS02445at 600.289 kb on - strand, within HMPREF1078_RS02445at 600.311 kb on + strand, within HMPREF1078_RS02445at 600.311 kb on + strand, within HMPREF1078_RS02445at 600.365 kb on + strand, within HMPREF1078_RS02445at 600.473 kb on + strand, within HMPREF1078_RS02445at 600.474 kb on - strand, within HMPREF1078_RS02445at 600.474 kb on - strand, within HMPREF1078_RS02445at 600.509 kb on + strand, within HMPREF1078_RS02445at 600.509 kb on + strand, within HMPREF1078_RS02445at 600.677 kb on + strand, within HMPREF1078_RS02445at 600.678 kb on - strand, within HMPREF1078_RS02445at 600.711 kb on + strand, within HMPREF1078_RS02445at 600.712 kb on - strand, within HMPREF1078_RS02445at 600.712 kb on - strand, within HMPREF1078_RS02445at 600.725 kb on + strand, within HMPREF1078_RS02445at 600.725 kb on + strand, within HMPREF1078_RS02445at 600.725 kb on + strand, within HMPREF1078_RS02445at 600.747 kb on + strand, within HMPREF1078_RS02445at 600.782 kb on - strand, within HMPREF1078_RS02445at 600.869 kb on - strand, within HMPREF1078_RS02445at 600.896 kb on + strand, within HMPREF1078_RS02445at 600.897 kb on - strand, within HMPREF1078_RS02445at 600.897 kb on - strand, within HMPREF1078_RS02445at 600.905 kb on + strand, within HMPREF1078_RS02445at 600.922 kb on + strand, within HMPREF1078_RS02445at 600.923 kb on - strand, within HMPREF1078_RS02445at 601.002 kb on + strand, within HMPREF1078_RS02445at 601.079 kb on + strand, within HMPREF1078_RS02445at 601.189 kb on + strandat 601.231 kb on - strandat 601.397 kb on + strand, within HMPREF1078_RS02450at 601.398 kb on - strand, within HMPREF1078_RS02450at 601.398 kb on - strand, within HMPREF1078_RS02450at 601.442 kb on - strand, within HMPREF1078_RS02450at 601.442 kb on - strand, within HMPREF1078_RS02450at 601.442 kb on - strand, within HMPREF1078_RS02450at 601.563 kb on - strand, within HMPREF1078_RS02450at 601.855 kb on + strand, within HMPREF1078_RS02450at 601.856 kb on - strand, within HMPREF1078_RS02450at 601.856 kb on - strand, within HMPREF1078_RS02450at 601.876 kb on - strand, within HMPREF1078_RS02450at 601.881 kb on - strand, within HMPREF1078_RS02450at 601.882 kb on + strand, within HMPREF1078_RS02450at 601.883 kb on - strand, within HMPREF1078_RS02450at 601.883 kb on - strand, within HMPREF1078_RS02450at 601.883 kb on - strand, within HMPREF1078_RS02450at 601.883 kb on - strand, within HMPREF1078_RS02450at 601.883 kb on - strand, within HMPREF1078_RS02450at 601.935 kb on - strand, within HMPREF1078_RS02450at 601.950 kb on + strand, within HMPREF1078_RS02450at 602.024 kb on + strand, within HMPREF1078_RS02450at 602.116 kb on + strand, within HMPREF1078_RS02450at 602.119 kb on - strand, within HMPREF1078_RS02450at 602.215 kb on - strand, within HMPREF1078_RS02450at 602.223 kb on - strand, within HMPREF1078_RS02450at 602.243 kb on + strand, within HMPREF1078_RS02450at 602.244 kb on - strand, within HMPREF1078_RS02450at 602.266 kb on - strand, within HMPREF1078_RS02450at 602.321 kb on + strand, within HMPREF1078_RS02450at 602.331 kb on + strand, within HMPREF1078_RS02450at 602.331 kb on + strand, within HMPREF1078_RS02450at 602.331 kb on + strand, within HMPREF1078_RS02450at 602.332 kb on - strand, within HMPREF1078_RS02450at 602.498 kb on + strandat 602.549 kb on + strandat 602.586 kb on + strandat 602.724 kb on + strand, within HMPREF1078_RS02455at 602.724 kb on + strand, within HMPREF1078_RS02455at 602.724 kb on + strand, within HMPREF1078_RS02455at 602.763 kb on + strand, within HMPREF1078_RS02455at 602.763 kb on + strand, within HMPREF1078_RS02455at 602.763 kb on + strand, within HMPREF1078_RS02455at 602.764 kb on - strand, within HMPREF1078_RS02455at 602.767 kb on + strand, within HMPREF1078_RS02455at 602.767 kb on + strand, within HMPREF1078_RS02455at 602.767 kb on + strand, within HMPREF1078_RS02455at 602.767 kb on + strand, within HMPREF1078_RS02455at 602.767 kb on - strand, within HMPREF1078_RS02455at 602.768 kb on - strand, within HMPREF1078_RS02455at 602.768 kb on - strand, within HMPREF1078_RS02455at 602.768 kb on - strand, within HMPREF1078_RS02455at 602.855 kb on + strand, within HMPREF1078_RS02455at 603.034 kb on + strand, within HMPREF1078_RS02455at 603.035 kb on - strand, within HMPREF1078_RS02455at 603.035 kb on - strand, within HMPREF1078_RS02455at 603.190 kb on + strand, within HMPREF1078_RS02455at 603.190 kb on + strand, within HMPREF1078_RS02455at 603.210 kb on - strand, within HMPREF1078_RS02455at 603.213 kb on + strand, within HMPREF1078_RS02455at 603.214 kb on - strand, within HMPREF1078_RS02455at 603.248 kb on + strand, within HMPREF1078_RS02455at 603.268 kb on - strand, within HMPREF1078_RS02455at 603.268 kb on - strand, within HMPREF1078_RS02455at 603.308 kb on + strand, within HMPREF1078_RS02455at 603.325 kb on - strandat 603.399 kb on + strandat 603.399 kb on + strandat 603.408 kb on + strandat 603.420 kb on - strandat 603.420 kb on - strandat 603.443 kb on - strandat 603.469 kb on - strandat 603.476 kb on + strandat 603.477 kb on - strandat 603.479 kb on - strandat 603.483 kb on + strandat 603.483 kb on + strandat 603.483 kb on + strandat 603.483 kb on + strandat 603.483 kb on + strandat 603.483 kb on + strandat 603.483 kb on + strandat 603.484 kb on - strandat 603.484 kb on - strandat 603.484 kb on - strandat 603.484 kb on - strandat 603.484 kb on - strandat 603.484 kb on - strandat 603.491 kb on + strandat 603.491 kb on + strandat 603.492 kb on - strandat 603.492 kb on - strandat 603.495 kb on + strandat 603.495 kb on + strandat 603.495 kb on + strandat 603.495 kb on + strandat 603.495 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corncob 2.5 mg/mL (C)
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600,286 - HMPREF1078_RS02445 0.10 -2.5
600,288 + HMPREF1078_RS02445 0.11 -1.3
600,289 - HMPREF1078_RS02445 0.11 -0.7
600,289 - HMPREF1078_RS02445 0.11 -1.7
600,311 + HMPREF1078_RS02445 0.13 -2.3
600,311 + HMPREF1078_RS02445 0.13 -2.9
600,365 + HMPREF1078_RS02445 0.18 -1.1
600,473 + HMPREF1078_RS02445 0.29 -1.9
600,474 - HMPREF1078_RS02445 0.29 -3.2
600,474 - HMPREF1078_RS02445 0.29 -0.7
600,509 + HMPREF1078_RS02445 0.32 -1.9
600,509 + HMPREF1078_RS02445 0.32 -3.0
600,677 + HMPREF1078_RS02445 0.48 -4.2
600,678 - HMPREF1078_RS02445 0.48 -0.7
600,711 + HMPREF1078_RS02445 0.52 -1.7
600,712 - HMPREF1078_RS02445 0.52 -3.8
600,712 - HMPREF1078_RS02445 0.52 -2.6
600,725 + HMPREF1078_RS02445 0.53 -0.5
600,725 + HMPREF1078_RS02445 0.53 -2.5
600,725 + HMPREF1078_RS02445 0.53 -2.8
600,747 + HMPREF1078_RS02445 0.55 -4.0
600,782 - HMPREF1078_RS02445 0.59 -2.8
600,869 - HMPREF1078_RS02445 0.67 -1.6
600,896 + HMPREF1078_RS02445 0.70 -3.5
600,897 - HMPREF1078_RS02445 0.70 -4.4
600,897 - HMPREF1078_RS02445 0.70 -2.0
600,905 + HMPREF1078_RS02445 0.70 -3.4
600,922 + HMPREF1078_RS02445 0.72 -1.4
600,923 - HMPREF1078_RS02445 0.72 -2.2
601,002 + HMPREF1078_RS02445 0.80 -2.9
601,079 + HMPREF1078_RS02445 0.87 -4.2
601,189 + -3.4
601,231 - -2.3
601,397 + HMPREF1078_RS02450 0.15 -4.4
601,398 - HMPREF1078_RS02450 0.15 -0.1
601,398 - HMPREF1078_RS02450 0.15 -3.1
601,442 - HMPREF1078_RS02450 0.18 -1.3
601,442 - HMPREF1078_RS02450 0.18 -0.8
601,442 - HMPREF1078_RS02450 0.18 -2.8
601,563 - HMPREF1078_RS02450 0.28 -6.3
601,855 + HMPREF1078_RS02450 0.50 -4.0
601,856 - HMPREF1078_RS02450 0.50 -2.5
601,856 - HMPREF1078_RS02450 0.50 -1.1
601,876 - HMPREF1078_RS02450 0.52 -4.2
601,881 - HMPREF1078_RS02450 0.52 -2.4
601,882 + HMPREF1078_RS02450 0.52 -4.0
601,883 - HMPREF1078_RS02450 0.52 -2.3
601,883 - HMPREF1078_RS02450 0.52 -3.8
601,883 - HMPREF1078_RS02450 0.52 -3.8
601,883 - HMPREF1078_RS02450 0.52 -2.8
601,883 - HMPREF1078_RS02450 0.52 -4.2
601,935 - HMPREF1078_RS02450 0.57 -2.1
601,950 + HMPREF1078_RS02450 0.58 +0.2
602,024 + HMPREF1078_RS02450 0.63 -4.3
602,116 + HMPREF1078_RS02450 0.71 +2.5
602,119 - HMPREF1078_RS02450 0.71 -2.8
602,215 - HMPREF1078_RS02450 0.78 -3.0
602,223 - HMPREF1078_RS02450 0.79 -1.9
602,243 + HMPREF1078_RS02450 0.80 -5.0
602,244 - HMPREF1078_RS02450 0.80 -2.7
602,266 - HMPREF1078_RS02450 0.82 -3.0
602,321 + HMPREF1078_RS02450 0.86 -3.3
602,331 + HMPREF1078_RS02450 0.87 -3.4
602,331 + HMPREF1078_RS02450 0.87 -3.3
602,331 + HMPREF1078_RS02450 0.87 -5.3
602,332 - HMPREF1078_RS02450 0.87 -2.4
602,498 + -2.9
602,549 + -2.0
602,586 + -3.2
602,724 + HMPREF1078_RS02455 0.20 -2.1
602,724 + HMPREF1078_RS02455 0.20 -3.9
602,724 + HMPREF1078_RS02455 0.20 -1.3
602,763 + HMPREF1078_RS02455 0.25 -0.5
602,763 + HMPREF1078_RS02455 0.25 -2.8
602,763 + HMPREF1078_RS02455 0.25 -2.5
602,764 - HMPREF1078_RS02455 0.25 -1.1
602,767 + HMPREF1078_RS02455 0.25 -2.8
602,767 + HMPREF1078_RS02455 0.25 -1.6
602,767 + HMPREF1078_RS02455 0.25 -1.4
602,767 + HMPREF1078_RS02455 0.25 -2.4
602,767 - HMPREF1078_RS02455 0.25 +0.8
602,768 - HMPREF1078_RS02455 0.25 -2.3
602,768 - HMPREF1078_RS02455 0.25 -2.7
602,768 - HMPREF1078_RS02455 0.25 -0.3
602,855 + HMPREF1078_RS02455 0.35 -1.7
603,034 + HMPREF1078_RS02455 0.56 -1.5
603,035 - HMPREF1078_RS02455 0.57 -3.4
603,035 - HMPREF1078_RS02455 0.57 -4.4
603,190 + HMPREF1078_RS02455 0.75 -3.1
603,190 + HMPREF1078_RS02455 0.75 +0.9
603,210 - HMPREF1078_RS02455 0.77 -3.3
603,213 + HMPREF1078_RS02455 0.77 -2.1
603,214 - HMPREF1078_RS02455 0.78 -3.4
603,248 + HMPREF1078_RS02455 0.82 -2.0
603,268 - HMPREF1078_RS02455 0.84 -2.5
603,268 - HMPREF1078_RS02455 0.84 -4.1
603,308 + HMPREF1078_RS02455 0.89 -1.1
603,325 - -4.0
603,399 + -1.8
603,399 + -5.2
603,408 + -0.3
603,420 - -1.6
603,420 - +0.9
603,443 - +1.0
603,469 - -0.8
603,476 + -3.6
603,477 - +1.1
603,479 - -1.0
603,483 + -3.3
603,483 + -0.3
603,483 + -2.9
603,483 + -2.8
603,483 + -2.9
603,483 + -0.3
603,483 + -3.8
603,484 - +1.2
603,484 - +0.0
603,484 - -0.2
603,484 - -0.8
603,484 - -0.1
603,484 - +0.6
603,491 + -3.3
603,491 + -3.2
603,492 - -0.3
603,492 - -0.0
603,495 + -3.1
603,495 + -3.5
603,495 + -2.8
603,495 + -4.1
603,495 + -1.9

Or see this region's nucleotide sequence