Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS19210

Experiment: Dextrin from potato starch 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS09080 and HMPREF1078_RS09085 overlap by 4 nucleotidesHMPREF1078_RS09085 and HMPREF1078_RS19210 are separated by 208 nucleotidesHMPREF1078_RS19210 and HMPREF1078_RS09095 are separated by 33 nucleotidesHMPREF1078_RS09095 and HMPREF1078_RS09100 are separated by 53 nucleotidesHMPREF1078_RS09100 and HMPREF1078_RS18710 overlap by 4 nucleotidesHMPREF1078_RS18710 and HMPREF1078_RS09105 are separated by 19 nucleotides HMPREF1078_RS09080: HMPREF1078_RS09080 - DUF3872 domain-containing protein, at 415,814 to 416,317 _RS09080 HMPREF1078_RS09085: HMPREF1078_RS09085 - hypothetical protein, at 416,314 to 416,841 _RS09085 HMPREF1078_RS19210: HMPREF1078_RS19210 - hypothetical protein, at 417,050 to 417,295 _RS19210 HMPREF1078_RS09095: HMPREF1078_RS09095 - hypothetical protein, at 417,329 to 417,637 _RS09095 HMPREF1078_RS09100: HMPREF1078_RS09100 - hypothetical protein, at 417,691 to 417,936 _RS09100 HMPREF1078_RS18710: HMPREF1078_RS18710 - DUF3873 domain-containing protein, at 417,933 to 418,166 _RS18710 HMPREF1078_RS09105: HMPREF1078_RS09105 - hypothetical protein, at 418,186 to 418,443 _RS09105 Position (kb) 417 418Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 416.057 kb on + strand, within HMPREF1078_RS09080at 416.157 kb on - strand, within HMPREF1078_RS09080at 416.215 kb on + strand, within HMPREF1078_RS09080at 416.225 kb on + strand, within HMPREF1078_RS09080at 416.226 kb on - strand, within HMPREF1078_RS09080at 416.324 kb on + strandat 416.494 kb on + strand, within HMPREF1078_RS09085at 416.653 kb on + strand, within HMPREF1078_RS09085at 416.708 kb on + strand, within HMPREF1078_RS09085at 416.708 kb on + strand, within HMPREF1078_RS09085at 416.744 kb on - strand, within HMPREF1078_RS09085at 416.752 kb on + strand, within HMPREF1078_RS09085at 416.753 kb on - strand, within HMPREF1078_RS09085at 416.753 kb on - strand, within HMPREF1078_RS09085at 416.753 kb on - strand, within HMPREF1078_RS09085at 416.755 kb on - strand, within HMPREF1078_RS09085at 416.755 kb on - strand, within HMPREF1078_RS09085at 416.755 kb on - strand, within HMPREF1078_RS09085at 416.756 kb on + strand, within HMPREF1078_RS09085at 416.757 kb on - strand, within HMPREF1078_RS09085at 416.757 kb on - strand, within HMPREF1078_RS09085at 416.831 kb on - strandat 416.831 kb on - strandat 416.831 kb on - strandat 416.833 kb on - strandat 416.833 kb on - strandat 416.874 kb on + strandat 416.879 kb on - strandat 416.910 kb on + strandat 416.911 kb on - strandat 416.921 kb on - strandat 416.991 kb on + strandat 416.992 kb on - strandat 417.022 kb on + strandat 417.022 kb on + strandat 417.023 kb on - strandat 417.023 kb on - strandat 417.103 kb on + strand, within HMPREF1078_RS19210at 417.103 kb on + strand, within HMPREF1078_RS19210at 417.104 kb on - strand, within HMPREF1078_RS19210at 417.104 kb on - strand, within HMPREF1078_RS19210at 417.145 kb on - strand, within HMPREF1078_RS19210at 417.197 kb on + strand, within HMPREF1078_RS19210at 417.198 kb on - strand, within HMPREF1078_RS19210at 417.199 kb on + strand, within HMPREF1078_RS19210at 417.199 kb on + strand, within HMPREF1078_RS19210at 417.200 kb on - strand, within HMPREF1078_RS19210at 417.202 kb on - strand, within HMPREF1078_RS19210at 417.202 kb on - strand, within HMPREF1078_RS19210at 417.218 kb on - strand, within HMPREF1078_RS19210at 417.342 kb on + strandat 417.343 kb on - strandat 417.343 kb on - strandat 417.387 kb on + strand, within HMPREF1078_RS09095at 417.388 kb on - strand, within HMPREF1078_RS09095at 417.391 kb on + strand, within HMPREF1078_RS09095at 417.392 kb on - strand, within HMPREF1078_RS09095at 417.467 kb on - strand, within HMPREF1078_RS09095at 417.559 kb on + strand, within HMPREF1078_RS09095at 417.560 kb on - strand, within HMPREF1078_RS09095at 417.560 kb on - strand, within HMPREF1078_RS09095at 417.560 kb on - strand, within HMPREF1078_RS09095at 417.563 kb on + strand, within HMPREF1078_RS09095at 417.563 kb on + strand, within HMPREF1078_RS09095at 417.617 kb on + strandat 417.618 kb on - strandat 417.637 kb on + strandat 417.638 kb on - strandat 417.650 kb on + strandat 417.663 kb on - strandat 417.754 kb on - strand, within HMPREF1078_RS09100at 417.758 kb on + strand, within HMPREF1078_RS09100at 417.780 kb on + strand, within HMPREF1078_RS09100at 417.781 kb on - strand, within HMPREF1078_RS09100at 417.822 kb on - strand, within HMPREF1078_RS09100at 417.824 kb on - strand, within HMPREF1078_RS09100at 417.892 kb on - strand, within HMPREF1078_RS09100at 417.892 kb on - strand, within HMPREF1078_RS09100at 417.910 kb on + strand, within HMPREF1078_RS09100at 417.910 kb on + strand, within HMPREF1078_RS09100at 417.923 kb on + strandat 417.923 kb on + strandat 417.936 kb on + strandat 417.937 kb on - strandat 418.105 kb on + strand, within HMPREF1078_RS18710at 418.106 kb on - strand, within HMPREF1078_RS18710at 418.138 kb on - strand, within HMPREF1078_RS18710at 418.167 kb on - strandat 418.179 kb on + strandat 418.180 kb on - strandat 418.241 kb on + strand, within HMPREF1078_RS09105at 418.256 kb on + strand, within HMPREF1078_RS09105at 418.280 kb on + strand, within HMPREF1078_RS09105at 418.281 kb on - strand, within HMPREF1078_RS09105

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C)
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416,057 + HMPREF1078_RS09080 0.48 +1.3
416,157 - HMPREF1078_RS09080 0.68 -2.8
416,215 + HMPREF1078_RS09080 0.80 -0.8
416,225 + HMPREF1078_RS09080 0.82 +0.3
416,226 - HMPREF1078_RS09080 0.82 -1.0
416,324 + -0.4
416,494 + HMPREF1078_RS09085 0.34 +0.1
416,653 + HMPREF1078_RS09085 0.64 +0.1
416,708 + HMPREF1078_RS09085 0.75 +0.9
416,708 + HMPREF1078_RS09085 0.75 -0.3
416,744 - HMPREF1078_RS09085 0.81 +0.3
416,752 + HMPREF1078_RS09085 0.83 -1.4
416,753 - HMPREF1078_RS09085 0.83 -1.9
416,753 - HMPREF1078_RS09085 0.83 +0.4
416,753 - HMPREF1078_RS09085 0.83 -0.5
416,755 - HMPREF1078_RS09085 0.84 -2.5
416,755 - HMPREF1078_RS09085 0.84 -2.3
416,755 - HMPREF1078_RS09085 0.84 -0.8
416,756 + HMPREF1078_RS09085 0.84 -1.6
416,757 - HMPREF1078_RS09085 0.84 -2.1
416,757 - HMPREF1078_RS09085 0.84 -0.5
416,831 - +0.3
416,831 - +1.3
416,831 - +0.1
416,833 - -0.8
416,833 - -0.8
416,874 + +1.1
416,879 - +0.3
416,910 + +0.1
416,911 - +1.3
416,921 - +0.5
416,991 + -1.8
416,992 - -0.3
417,022 + -2.0
417,022 + +1.3
417,023 - -0.8
417,023 - -0.2
417,103 + HMPREF1078_RS19210 0.22 -1.8
417,103 + HMPREF1078_RS19210 0.22 -1.2
417,104 - HMPREF1078_RS19210 0.22 -0.5
417,104 - HMPREF1078_RS19210 0.22 +1.0
417,145 - HMPREF1078_RS19210 0.39 +0.5
417,197 + HMPREF1078_RS19210 0.60 -0.4
417,198 - HMPREF1078_RS19210 0.60 -0.3
417,199 + HMPREF1078_RS19210 0.61 -2.7
417,199 + HMPREF1078_RS19210 0.61 -1.4
417,200 - HMPREF1078_RS19210 0.61 +0.9
417,202 - HMPREF1078_RS19210 0.62 +0.1
417,202 - HMPREF1078_RS19210 0.62 +0.0
417,218 - HMPREF1078_RS19210 0.68 +0.1
417,342 + +0.8
417,343 - -0.0
417,343 - +0.7
417,387 + HMPREF1078_RS09095 0.19 -1.4
417,388 - HMPREF1078_RS09095 0.19 -0.2
417,391 + HMPREF1078_RS09095 0.20 -0.4
417,392 - HMPREF1078_RS09095 0.20 +2.1
417,467 - HMPREF1078_RS09095 0.45 -0.4
417,559 + HMPREF1078_RS09095 0.74 -1.0
417,560 - HMPREF1078_RS09095 0.75 +0.5
417,560 - HMPREF1078_RS09095 0.75 +0.5
417,560 - HMPREF1078_RS09095 0.75 -2.4
417,563 + HMPREF1078_RS09095 0.76 -0.9
417,563 + HMPREF1078_RS09095 0.76 -0.4
417,617 + -0.3
417,618 - +3.3
417,637 + -1.2
417,638 - +0.5
417,650 + +0.1
417,663 - -0.7
417,754 - HMPREF1078_RS09100 0.26 -0.6
417,758 + HMPREF1078_RS09100 0.27 +1.8
417,780 + HMPREF1078_RS09100 0.36 +1.1
417,781 - HMPREF1078_RS09100 0.37 -0.2
417,822 - HMPREF1078_RS09100 0.53 -0.8
417,824 - HMPREF1078_RS09100 0.54 +0.6
417,892 - HMPREF1078_RS09100 0.82 +1.1
417,892 - HMPREF1078_RS09100 0.82 +0.3
417,910 + HMPREF1078_RS09100 0.89 -2.0
417,910 + HMPREF1078_RS09100 0.89 -0.1
417,923 + +0.3
417,923 + +1.5
417,936 + -0.6
417,937 - -1.1
418,105 + HMPREF1078_RS18710 0.74 -0.1
418,106 - HMPREF1078_RS18710 0.74 -1.0
418,138 - HMPREF1078_RS18710 0.88 -1.4
418,167 - -1.1
418,179 + -0.3
418,180 - -2.2
418,241 + HMPREF1078_RS09105 0.21 +3.3
418,256 + HMPREF1078_RS09105 0.27 -0.6
418,280 + HMPREF1078_RS09105 0.36 +0.1
418,281 - HMPREF1078_RS09105 0.37 -1.6

Or see this region's nucleotide sequence