Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS17150 and HMPREF1078_RS17155 are separated by 171 nucleotides HMPREF1078_RS17155 and HMPREF1078_RS17160 are separated by 28 nucleotides HMPREF1078_RS17160 and HMPREF1078_RS17165 are separated by 47 nucleotides
HMPREF1078_RS17150: HMPREF1078_RS17150 - ATP-binding protein, at 144,047 to 145,177
_RS17150
HMPREF1078_RS17155: HMPREF1078_RS17155 - gluconate 5-dehydrogenase, at 145,349 to 146,140
_RS17155
HMPREF1078_RS17160: HMPREF1078_RS17160 - 5-dehydro-4-deoxy-D-glucuronate isomerase, at 146,169 to 147,011
_RS17160
HMPREF1078_RS17165: HMPREF1078_RS17165 - DUF2264 domain-containing protein, at 147,059 to 148,276
_RS17165
Position (kb) 145
146
147 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 144.430 kb on - strand, within HMPREF1078_RS17150 at 144.430 kb on - strand, within HMPREF1078_RS17150 at 144.452 kb on - strand, within HMPREF1078_RS17150 at 144.452 kb on - strand, within HMPREF1078_RS17150 at 144.452 kb on - strand, within HMPREF1078_RS17150 at 144.458 kb on - strand, within HMPREF1078_RS17150 at 144.501 kb on + strand, within HMPREF1078_RS17150 at 144.501 kb on + strand, within HMPREF1078_RS17150 at 144.501 kb on + strand, within HMPREF1078_RS17150 at 144.535 kb on + strand, within HMPREF1078_RS17150 at 144.535 kb on + strand, within HMPREF1078_RS17150 at 144.535 kb on + strand, within HMPREF1078_RS17150 at 144.539 kb on + strand, within HMPREF1078_RS17150 at 144.539 kb on + strand, within HMPREF1078_RS17150 at 144.540 kb on - strand, within HMPREF1078_RS17150 at 144.540 kb on - strand, within HMPREF1078_RS17150 at 144.568 kb on + strand, within HMPREF1078_RS17150 at 144.605 kb on + strand, within HMPREF1078_RS17150 at 144.642 kb on + strand, within HMPREF1078_RS17150 at 144.642 kb on + strand, within HMPREF1078_RS17150 at 144.643 kb on - strand, within HMPREF1078_RS17150 at 144.643 kb on - strand, within HMPREF1078_RS17150 at 144.643 kb on - strand, within HMPREF1078_RS17150 at 144.646 kb on + strand, within HMPREF1078_RS17150 at 144.646 kb on + strand, within HMPREF1078_RS17150 at 144.647 kb on - strand, within HMPREF1078_RS17150 at 144.706 kb on + strand, within HMPREF1078_RS17150 at 144.707 kb on - strand, within HMPREF1078_RS17150 at 144.715 kb on + strand, within HMPREF1078_RS17150 at 144.715 kb on + strand, within HMPREF1078_RS17150 at 144.715 kb on + strand, within HMPREF1078_RS17150 at 144.820 kb on + strand, within HMPREF1078_RS17150 at 144.821 kb on - strand, within HMPREF1078_RS17150 at 144.821 kb on - strand, within HMPREF1078_RS17150 at 144.860 kb on - strand, within HMPREF1078_RS17150 at 144.957 kb on + strand, within HMPREF1078_RS17150 at 144.962 kb on - strand, within HMPREF1078_RS17150 at 144.962 kb on - strand, within HMPREF1078_RS17150 at 144.962 kb on - strand, within HMPREF1078_RS17150 at 144.976 kb on + strand, within HMPREF1078_RS17150 at 144.977 kb on - strand, within HMPREF1078_RS17150 at 144.977 kb on - strand, within HMPREF1078_RS17150 at 144.977 kb on - strand, within HMPREF1078_RS17150 at 144.981 kb on + strand, within HMPREF1078_RS17150 at 144.982 kb on - strand, within HMPREF1078_RS17150 at 145.061 kb on + strand, within HMPREF1078_RS17150 at 145.150 kb on + strand at 145.163 kb on - strand at 145.163 kb on - strand at 145.233 kb on - strand at 145.233 kb on - strand at 145.249 kb on - strand at 145.286 kb on - strand at 145.329 kb on + strand at 145.347 kb on + strand at 145.361 kb on - strand at 145.368 kb on + strand at 145.368 kb on + strand at 145.393 kb on - strand at 145.573 kb on + strand, within HMPREF1078_RS17155 at 145.573 kb on + strand, within HMPREF1078_RS17155 at 145.573 kb on + strand, within HMPREF1078_RS17155 at 145.575 kb on + strand, within HMPREF1078_RS17155 at 145.594 kb on + strand, within HMPREF1078_RS17155 at 145.595 kb on - strand, within HMPREF1078_RS17155 at 145.595 kb on - strand, within HMPREF1078_RS17155 at 145.595 kb on - strand, within HMPREF1078_RS17155 at 145.595 kb on - strand, within HMPREF1078_RS17155 at 145.607 kb on - strand, within HMPREF1078_RS17155 at 145.607 kb on - strand, within HMPREF1078_RS17155 at 145.608 kb on + strand, within HMPREF1078_RS17155 at 145.718 kb on - strand, within HMPREF1078_RS17155 at 145.769 kb on - strand, within HMPREF1078_RS17155 at 145.847 kb on - strand, within HMPREF1078_RS17155 at 146.030 kb on - strand, within HMPREF1078_RS17155 at 146.038 kb on + strand, within HMPREF1078_RS17155 at 146.039 kb on - strand, within HMPREF1078_RS17155 at 146.041 kb on + strand, within HMPREF1078_RS17155 at 146.088 kb on + strand at 146.088 kb on + strand at 146.117 kb on - strand at 146.141 kb on - strand at 146.143 kb on + strand at 146.143 kb on + strand at 146.143 kb on + strand at 146.144 kb on - strand at 146.144 kb on - strand at 146.147 kb on - strand at 146.148 kb on + strand at 146.149 kb on - strand at 146.149 kb on - strand at 146.150 kb on + strand at 146.150 kb on + strand at 146.151 kb on - strand at 146.151 kb on - strand at 146.154 kb on - strand at 146.246 kb on + strand at 146.249 kb on - strand at 146.277 kb on - strand, within HMPREF1078_RS17160 at 146.361 kb on - strand, within HMPREF1078_RS17160 at 146.361 kb on - strand, within HMPREF1078_RS17160 at 146.403 kb on - strand, within HMPREF1078_RS17160 at 146.597 kb on - strand, within HMPREF1078_RS17160 at 146.616 kb on - strand, within HMPREF1078_RS17160 at 146.622 kb on - strand, within HMPREF1078_RS17160 at 146.867 kb on + strand, within HMPREF1078_RS17160 at 146.867 kb on + strand, within HMPREF1078_RS17160 at 146.868 kb on - strand, within HMPREF1078_RS17160 at 146.875 kb on + strand, within HMPREF1078_RS17160 at 146.891 kb on + strand, within HMPREF1078_RS17160 at 146.942 kb on + strand at 146.951 kb on + strand at 146.951 kb on + strand at 146.987 kb on - strand at 146.999 kb on - strand at 147.018 kb on - strand at 147.018 kb on - strand at 147.029 kb on - strand at 147.124 kb on + strand at 147.126 kb on + strand at 147.127 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 144,430 - HMPREF1078_RS17150 0.34 -0.9 144,430 - HMPREF1078_RS17150 0.34 +0.7 144,452 - HMPREF1078_RS17150 0.36 -0.1 144,452 - HMPREF1078_RS17150 0.36 -0.2 144,452 - HMPREF1078_RS17150 0.36 -0.1 144,458 - HMPREF1078_RS17150 0.36 +1.6 144,501 + HMPREF1078_RS17150 0.40 -0.7 144,501 + HMPREF1078_RS17150 0.40 -0.2 144,501 + HMPREF1078_RS17150 0.40 +0.8 144,535 + HMPREF1078_RS17150 0.43 +0.3 144,535 + HMPREF1078_RS17150 0.43 -0.4 144,535 + HMPREF1078_RS17150 0.43 -0.9 144,539 + HMPREF1078_RS17150 0.44 +0.4 144,539 + HMPREF1078_RS17150 0.44 +0.4 144,540 - HMPREF1078_RS17150 0.44 -2.8 144,540 - HMPREF1078_RS17150 0.44 -1.7 144,568 + HMPREF1078_RS17150 0.46 +0.7 144,605 + HMPREF1078_RS17150 0.49 +1.0 144,642 + HMPREF1078_RS17150 0.53 +0.0 144,642 + HMPREF1078_RS17150 0.53 +0.5 144,643 - HMPREF1078_RS17150 0.53 -1.0 144,643 - HMPREF1078_RS17150 0.53 +0.5 144,643 - HMPREF1078_RS17150 0.53 -0.1 144,646 + HMPREF1078_RS17150 0.53 -1.6 144,646 + HMPREF1078_RS17150 0.53 -1.0 144,647 - HMPREF1078_RS17150 0.53 -1.3 144,706 + HMPREF1078_RS17150 0.58 -0.3 144,707 - HMPREF1078_RS17150 0.58 -0.1 144,715 + HMPREF1078_RS17150 0.59 +0.1 144,715 + HMPREF1078_RS17150 0.59 -0.6 144,715 + HMPREF1078_RS17150 0.59 +1.1 144,820 + HMPREF1078_RS17150 0.68 +0.7 144,821 - HMPREF1078_RS17150 0.68 -1.4 144,821 - HMPREF1078_RS17150 0.68 -0.4 144,860 - HMPREF1078_RS17150 0.72 +3.7 144,957 + HMPREF1078_RS17150 0.80 +0.1 144,962 - HMPREF1078_RS17150 0.81 -1.8 144,962 - HMPREF1078_RS17150 0.81 -2.7 144,962 - HMPREF1078_RS17150 0.81 -0.8 144,976 + HMPREF1078_RS17150 0.82 -2.5 144,977 - HMPREF1078_RS17150 0.82 -0.1 144,977 - HMPREF1078_RS17150 0.82 +0.4 144,977 - HMPREF1078_RS17150 0.82 -0.1 144,981 + HMPREF1078_RS17150 0.83 +0.0 144,982 - HMPREF1078_RS17150 0.83 -0.6 145,061 + HMPREF1078_RS17150 0.90 +0.6 145,150 + -0.1 145,163 - -0.1 145,163 - -0.8 145,233 - +1.6 145,233 - +0.1 145,249 - +1.0 145,286 - +1.3 145,329 + +0.0 145,347 + +0.0 145,361 - +0.8 145,368 + +0.2 145,368 + -0.7 145,393 - +0.3 145,573 + HMPREF1078_RS17155 0.28 -1.3 145,573 + HMPREF1078_RS17155 0.28 -0.5 145,573 + HMPREF1078_RS17155 0.28 +1.3 145,575 + HMPREF1078_RS17155 0.29 +1.9 145,594 + HMPREF1078_RS17155 0.31 +1.2 145,595 - HMPREF1078_RS17155 0.31 +0.5 145,595 - HMPREF1078_RS17155 0.31 +0.3 145,595 - HMPREF1078_RS17155 0.31 +1.1 145,595 - HMPREF1078_RS17155 0.31 -0.2 145,607 - HMPREF1078_RS17155 0.33 -1.3 145,607 - HMPREF1078_RS17155 0.33 -0.9 145,608 + HMPREF1078_RS17155 0.33 +0.3 145,718 - HMPREF1078_RS17155 0.47 +1.3 145,769 - HMPREF1078_RS17155 0.53 -1.7 145,847 - HMPREF1078_RS17155 0.63 -1.1 146,030 - HMPREF1078_RS17155 0.86 +0.1 146,038 + HMPREF1078_RS17155 0.87 +0.8 146,039 - HMPREF1078_RS17155 0.87 +0.9 146,041 + HMPREF1078_RS17155 0.87 -1.9 146,088 + +0.2 146,088 + -1.1 146,117 - -0.3 146,141 - -1.4 146,143 + -0.3 146,143 + +0.4 146,143 + -2.4 146,144 - -0.1 146,144 - +1.1 146,147 - +1.7 146,148 + -0.4 146,149 - -1.4 146,149 - +0.6 146,150 + -0.8 146,150 + -0.6 146,151 - -0.1 146,151 - +2.5 146,154 - -0.3 146,246 + +1.9 146,249 - +1.7 146,277 - HMPREF1078_RS17160 0.13 +0.1 146,361 - HMPREF1078_RS17160 0.23 +0.6 146,361 - HMPREF1078_RS17160 0.23 -1.4 146,403 - HMPREF1078_RS17160 0.28 -0.5 146,597 - HMPREF1078_RS17160 0.51 +0.9 146,616 - HMPREF1078_RS17160 0.53 +0.1 146,622 - HMPREF1078_RS17160 0.54 -0.5 146,867 + HMPREF1078_RS17160 0.83 +1.7 146,867 + HMPREF1078_RS17160 0.83 +0.1 146,868 - HMPREF1078_RS17160 0.83 +0.9 146,875 + HMPREF1078_RS17160 0.84 -1.3 146,891 + HMPREF1078_RS17160 0.86 +1.5 146,942 + -0.4 146,951 + -0.5 146,951 + -0.3 146,987 - +0.1 146,999 - -1.2 147,018 - +0.7 147,018 - -0.6 147,029 - +0.3 147,124 + +0.5 147,126 + +0.2 147,127 - +0.3
Or see this region's nucleotide sequence