Experiment: Dextrin from potato starch 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09850 and HMPREF1078_RS09855 are separated by 86 nucleotides HMPREF1078_RS09855 and HMPREF1078_RS09860 overlap by 8 nucleotides HMPREF1078_RS09860 and HMPREF1078_RS09865 are separated by 263 nucleotides HMPREF1078_RS09865 and HMPREF1078_RS09870 are separated by 6 nucleotides
HMPREF1078_RS09850: HMPREF1078_RS09850 - IS66 family transposase, at 568,637 to 570,208
_RS09850
HMPREF1078_RS09855: HMPREF1078_RS09855 - IS66 family insertion sequence element accessory protein TnpB, at 570,295 to 570,642
_RS09855
HMPREF1078_RS09860: HMPREF1078_RS09860 - hypothetical protein, at 570,635 to 571,057
_RS09860
HMPREF1078_RS09865: HMPREF1078_RS09865 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 571,321 to 571,995
_RS09865
HMPREF1078_RS09870: HMPREF1078_RS09870 - DUF5032 domain-containing protein, at 572,002 to 572,880
_RS09870
Position (kb) 570
571
572 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 569.652 kb on + strand, within HMPREF1078_RS09850 at 569.653 kb on - strand, within HMPREF1078_RS09850 at 569.653 kb on - strand, within HMPREF1078_RS09850 at 569.653 kb on - strand, within HMPREF1078_RS09850 at 569.657 kb on - strand, within HMPREF1078_RS09850 at 569.694 kb on + strand, within HMPREF1078_RS09850 at 569.694 kb on + strand, within HMPREF1078_RS09850 at 569.694 kb on + strand, within HMPREF1078_RS09850 at 569.695 kb on - strand, within HMPREF1078_RS09850 at 569.715 kb on + strand, within HMPREF1078_RS09850 at 569.715 kb on + strand, within HMPREF1078_RS09850 at 569.715 kb on + strand, within HMPREF1078_RS09850 at 569.731 kb on - strand, within HMPREF1078_RS09850 at 569.734 kb on + strand, within HMPREF1078_RS09850 at 569.734 kb on + strand, within HMPREF1078_RS09850 at 569.734 kb on + strand, within HMPREF1078_RS09850 at 569.734 kb on + strand, within HMPREF1078_RS09850 at 569.734 kb on + strand, within HMPREF1078_RS09850 at 569.734 kb on + strand, within HMPREF1078_RS09850 at 569.734 kb on + strand, within HMPREF1078_RS09850 at 569.735 kb on - strand, within HMPREF1078_RS09850 at 569.735 kb on - strand, within HMPREF1078_RS09850 at 569.735 kb on - strand, within HMPREF1078_RS09850 at 569.735 kb on - strand, within HMPREF1078_RS09850 at 569.735 kb on - strand, within HMPREF1078_RS09850 at 569.735 kb on - strand, within HMPREF1078_RS09850 at 569.785 kb on + strand, within HMPREF1078_RS09850 at 569.836 kb on + strand, within HMPREF1078_RS09850 at 569.836 kb on + strand, within HMPREF1078_RS09850 at 569.836 kb on + strand, within HMPREF1078_RS09850 at 569.836 kb on + strand, within HMPREF1078_RS09850 at 569.924 kb on + strand, within HMPREF1078_RS09850 at 569.956 kb on + strand, within HMPREF1078_RS09850 at 570.317 kb on + strand at 570.594 kb on + strand, within HMPREF1078_RS09855 at 570.597 kb on - strand, within HMPREF1078_RS09855 at 570.599 kb on + strand, within HMPREF1078_RS09855 at 570.600 kb on - strand, within HMPREF1078_RS09855 at 570.606 kb on - strand, within HMPREF1078_RS09855 at 570.615 kb on - strand at 570.667 kb on - strand at 570.668 kb on + strand at 570.668 kb on + strand at 570.687 kb on - strand, within HMPREF1078_RS09860 at 570.759 kb on + strand, within HMPREF1078_RS09860 at 570.759 kb on + strand, within HMPREF1078_RS09860 at 570.851 kb on - strand, within HMPREF1078_RS09860 at 570.941 kb on - strand, within HMPREF1078_RS09860 at 570.943 kb on - strand, within HMPREF1078_RS09860 at 570.948 kb on - strand, within HMPREF1078_RS09860 at 570.948 kb on - strand, within HMPREF1078_RS09860 at 570.984 kb on + strand, within HMPREF1078_RS09860 at 570.985 kb on - strand, within HMPREF1078_RS09860 at 571.017 kb on + strand at 571.017 kb on + strand at 571.018 kb on - strand at 571.018 kb on - strand at 571.030 kb on + strand at 571.077 kb on + strand at 571.105 kb on - strand at 571.123 kb on - strand at 571.127 kb on - strand at 571.135 kb on + strand at 571.139 kb on + strand at 571.139 kb on + strand at 571.139 kb on + strand at 571.139 kb on + strand at 571.139 kb on + strand at 571.139 kb on + strand at 571.140 kb on - strand at 571.140 kb on - strand at 571.140 kb on - strand at 571.147 kb on - strand at 571.151 kb on - strand at 571.151 kb on - strand at 571.163 kb on + strand at 571.164 kb on - strand at 571.206 kb on + strand at 571.214 kb on + strand at 571.219 kb on + strand at 571.253 kb on - strand at 571.288 kb on + strand at 571.845 kb on - strand, within HMPREF1078_RS09865 at 571.985 kb on + strand at 571.993 kb on + strand at 572.004 kb on - strand at 572.031 kb on + strand at 572.032 kb on - strand at 572.032 kb on - strand at 572.032 kb on - strand at 572.040 kb on - strand at 572.045 kb on + strand at 572.045 kb on + strand at 572.046 kb on - strand at 572.046 kb on - strand at 572.046 kb on - strand at 572.046 kb on - strand at 572.046 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C) remove 569,652 + HMPREF1078_RS09850 0.65 +0.3 569,653 - HMPREF1078_RS09850 0.65 -0.5 569,653 - HMPREF1078_RS09850 0.65 +0.2 569,653 - HMPREF1078_RS09850 0.65 +0.4 569,657 - HMPREF1078_RS09850 0.65 -0.5 569,694 + HMPREF1078_RS09850 0.67 +0.5 569,694 + HMPREF1078_RS09850 0.67 +1.4 569,694 + HMPREF1078_RS09850 0.67 +0.5 569,695 - HMPREF1078_RS09850 0.67 +0.8 569,715 + HMPREF1078_RS09850 0.69 -0.1 569,715 + HMPREF1078_RS09850 0.69 -0.0 569,715 + HMPREF1078_RS09850 0.69 +1.4 569,731 - HMPREF1078_RS09850 0.70 +0.5 569,734 + HMPREF1078_RS09850 0.70 +1.1 569,734 + HMPREF1078_RS09850 0.70 -0.4 569,734 + HMPREF1078_RS09850 0.70 -0.5 569,734 + HMPREF1078_RS09850 0.70 -1.0 569,734 + HMPREF1078_RS09850 0.70 -1.6 569,734 + HMPREF1078_RS09850 0.70 +0.9 569,734 + HMPREF1078_RS09850 0.70 -0.9 569,735 - HMPREF1078_RS09850 0.70 -0.1 569,735 - HMPREF1078_RS09850 0.70 -0.3 569,735 - HMPREF1078_RS09850 0.70 -0.9 569,735 - HMPREF1078_RS09850 0.70 +1.0 569,735 - HMPREF1078_RS09850 0.70 +0.5 569,735 - HMPREF1078_RS09850 0.70 +0.3 569,785 + HMPREF1078_RS09850 0.73 +0.6 569,836 + HMPREF1078_RS09850 0.76 -0.8 569,836 + HMPREF1078_RS09850 0.76 +0.3 569,836 + HMPREF1078_RS09850 0.76 +0.2 569,836 + HMPREF1078_RS09850 0.76 -0.3 569,924 + HMPREF1078_RS09850 0.82 +1.5 569,956 + HMPREF1078_RS09850 0.84 +2.1 570,317 + -1.1 570,594 + HMPREF1078_RS09855 0.86 -1.2 570,597 - HMPREF1078_RS09855 0.87 +0.5 570,599 + HMPREF1078_RS09855 0.87 -2.3 570,600 - HMPREF1078_RS09855 0.88 -1.1 570,606 - HMPREF1078_RS09855 0.89 -0.1 570,615 - +2.0 570,667 - -1.8 570,668 + -3.1 570,668 + +0.8 570,687 - HMPREF1078_RS09860 0.12 +1.4 570,759 + HMPREF1078_RS09860 0.29 +0.8 570,759 + HMPREF1078_RS09860 0.29 -2.5 570,851 - HMPREF1078_RS09860 0.51 -1.4 570,941 - HMPREF1078_RS09860 0.72 +2.3 570,943 - HMPREF1078_RS09860 0.73 +0.1 570,948 - HMPREF1078_RS09860 0.74 +0.3 570,948 - HMPREF1078_RS09860 0.74 +1.7 570,984 + HMPREF1078_RS09860 0.83 -0.6 570,985 - HMPREF1078_RS09860 0.83 -0.3 571,017 + +0.8 571,017 + -2.1 571,018 - +0.3 571,018 - -0.2 571,030 + -0.1 571,077 + -0.5 571,105 - -1.2 571,123 - +0.5 571,127 - +0.1 571,135 + +1.1 571,139 + -1.5 571,139 + -0.4 571,139 + +0.5 571,139 + +1.8 571,139 + +0.7 571,139 + -0.2 571,140 - -1.1 571,140 - +1.2 571,140 - -0.7 571,147 - +0.7 571,151 - -0.5 571,151 - -0.7 571,163 + +1.0 571,164 - -1.7 571,206 + -0.1 571,214 + -0.2 571,219 + +1.9 571,253 - -1.2 571,288 + -0.3 571,845 - HMPREF1078_RS09865 0.78 +0.5 571,985 + -1.4 571,993 + -0.2 572,004 - -3.4 572,031 + -0.2 572,032 - +0.8 572,032 - -1.3 572,032 - -1.7 572,040 - +0.4 572,045 + +0.3 572,045 + +0.2 572,046 - +1.0 572,046 - -1.5 572,046 - +2.5 572,046 - +1.2 572,046 - +1.9
Or see this region's nucleotide sequence