Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS08070

Experiment: Dextrin from potato starch 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS08065 and HMPREF1078_RS08070 overlap by 4 nucleotidesHMPREF1078_RS08070 and HMPREF1078_RS08075 are separated by 12 nucleotidesHMPREF1078_RS08075 and HMPREF1078_RS08080 are separated by 20 nucleotides HMPREF1078_RS08065: HMPREF1078_RS08065 - Cof-type HAD-IIB family hydrolase, at 176,322 to 177,554 _RS08065 HMPREF1078_RS08070: HMPREF1078_RS08070 - isochorismate synthase, at 177,551 to 178,672 _RS08070 HMPREF1078_RS08075: HMPREF1078_RS08075 - cysteine synthase A, at 178,685 to 179,626 _RS08075 HMPREF1078_RS08080: HMPREF1078_RS08080 - ThuA domain-containing protein, at 179,647 to 180,561 _RS08080 Position (kb) 177 178 179Strain fitness (log2 ratio) -2 -1 0 1 2at 176.691 kb on + strand, within HMPREF1078_RS08065at 176.691 kb on + strand, within HMPREF1078_RS08065at 176.692 kb on - strand, within HMPREF1078_RS08065at 176.780 kb on + strand, within HMPREF1078_RS08065at 176.884 kb on + strand, within HMPREF1078_RS08065at 177.136 kb on + strand, within HMPREF1078_RS08065at 177.136 kb on + strand, within HMPREF1078_RS08065at 177.137 kb on - strand, within HMPREF1078_RS08065at 177.170 kb on + strand, within HMPREF1078_RS08065at 177.191 kb on - strand, within HMPREF1078_RS08065at 177.215 kb on + strand, within HMPREF1078_RS08065at 177.215 kb on + strand, within HMPREF1078_RS08065at 177.215 kb on + strand, within HMPREF1078_RS08065at 177.215 kb on + strand, within HMPREF1078_RS08065at 177.215 kb on + strand, within HMPREF1078_RS08065at 177.215 kb on + strand, within HMPREF1078_RS08065at 177.215 kb on + strand, within HMPREF1078_RS08065at 177.215 kb on + strand, within HMPREF1078_RS08065at 177.215 kb on + strand, within HMPREF1078_RS08065at 177.216 kb on - strand, within HMPREF1078_RS08065at 177.216 kb on - strand, within HMPREF1078_RS08065at 177.216 kb on - strand, within HMPREF1078_RS08065at 177.216 kb on - strand, within HMPREF1078_RS08065at 177.216 kb on - strand, within HMPREF1078_RS08065at 177.219 kb on + strand, within HMPREF1078_RS08065at 177.219 kb on + strand, within HMPREF1078_RS08065at 177.219 kb on + strand, within HMPREF1078_RS08065at 177.219 kb on + strand, within HMPREF1078_RS08065at 177.220 kb on - strand, within HMPREF1078_RS08065at 177.220 kb on - strand, within HMPREF1078_RS08065at 177.220 kb on - strand, within HMPREF1078_RS08065at 177.220 kb on - strand, within HMPREF1078_RS08065at 177.220 kb on - strand, within HMPREF1078_RS08065at 177.238 kb on + strand, within HMPREF1078_RS08065at 177.289 kb on + strand, within HMPREF1078_RS08065at 177.289 kb on + strand, within HMPREF1078_RS08065at 177.290 kb on - strand, within HMPREF1078_RS08065at 177.398 kb on + strand, within HMPREF1078_RS08065at 177.398 kb on + strand, within HMPREF1078_RS08065at 177.398 kb on + strand, within HMPREF1078_RS08065at 177.398 kb on + strand, within HMPREF1078_RS08065at 177.398 kb on + strand, within HMPREF1078_RS08065at 177.398 kb on + strand, within HMPREF1078_RS08065at 177.399 kb on - strand, within HMPREF1078_RS08065at 177.399 kb on - strand, within HMPREF1078_RS08065at 177.399 kb on - strand, within HMPREF1078_RS08065at 177.399 kb on - strand, within HMPREF1078_RS08065at 177.399 kb on - strand, within HMPREF1078_RS08065at 177.399 kb on - strand, within HMPREF1078_RS08065at 177.399 kb on - strand, within HMPREF1078_RS08065at 177.423 kb on - strand, within HMPREF1078_RS08065at 177.487 kb on + strandat 177.487 kb on + strandat 177.487 kb on + strandat 177.488 kb on - strandat 177.539 kb on - strandat 177.679 kb on + strand, within HMPREF1078_RS08070at 177.679 kb on + strand, within HMPREF1078_RS08070at 177.691 kb on + strand, within HMPREF1078_RS08070at 177.762 kb on + strand, within HMPREF1078_RS08070at 177.762 kb on + strand, within HMPREF1078_RS08070at 177.763 kb on - strand, within HMPREF1078_RS08070at 177.818 kb on + strand, within HMPREF1078_RS08070at 178.034 kb on + strand, within HMPREF1078_RS08070at 178.040 kb on + strand, within HMPREF1078_RS08070at 178.041 kb on - strand, within HMPREF1078_RS08070at 178.047 kb on - strand, within HMPREF1078_RS08070at 178.063 kb on + strand, within HMPREF1078_RS08070at 178.136 kb on - strand, within HMPREF1078_RS08070at 178.136 kb on - strand, within HMPREF1078_RS08070at 178.136 kb on - strand, within HMPREF1078_RS08070at 178.179 kb on + strand, within HMPREF1078_RS08070at 178.179 kb on + strand, within HMPREF1078_RS08070at 178.180 kb on - strand, within HMPREF1078_RS08070at 178.220 kb on + strand, within HMPREF1078_RS08070at 178.220 kb on + strand, within HMPREF1078_RS08070at 178.225 kb on - strand, within HMPREF1078_RS08070at 178.233 kb on - strand, within HMPREF1078_RS08070at 178.233 kb on - strand, within HMPREF1078_RS08070at 178.237 kb on - strand, within HMPREF1078_RS08070at 178.447 kb on - strand, within HMPREF1078_RS08070at 178.464 kb on - strand, within HMPREF1078_RS08070at 178.464 kb on - strand, within HMPREF1078_RS08070at 178.466 kb on + strand, within HMPREF1078_RS08070at 178.514 kb on + strand, within HMPREF1078_RS08070at 178.515 kb on - strand, within HMPREF1078_RS08070at 178.515 kb on - strand, within HMPREF1078_RS08070at 178.563 kb on - strandat 178.674 kb on + strandat 178.713 kb on + strandat 178.794 kb on - strand, within HMPREF1078_RS08075at 178.917 kb on + strand, within HMPREF1078_RS08075at 179.583 kb on - strandat 179.641 kb on + strandat 179.641 kb on + strandat 179.660 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C)
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176,691 + HMPREF1078_RS08065 0.30 +0.3
176,691 + HMPREF1078_RS08065 0.30 +0.3
176,692 - HMPREF1078_RS08065 0.30 -2.3
176,780 + HMPREF1078_RS08065 0.37 -2.2
176,884 + HMPREF1078_RS08065 0.46 +0.2
177,136 + HMPREF1078_RS08065 0.66 +2.1
177,136 + HMPREF1078_RS08065 0.66 -1.3
177,137 - HMPREF1078_RS08065 0.66 -1.4
177,170 + HMPREF1078_RS08065 0.69 +0.8
177,191 - HMPREF1078_RS08065 0.70 +0.5
177,215 + HMPREF1078_RS08065 0.72 -0.4
177,215 + HMPREF1078_RS08065 0.72 -0.4
177,215 + HMPREF1078_RS08065 0.72 +0.8
177,215 + HMPREF1078_RS08065 0.72 -2.3
177,215 + HMPREF1078_RS08065 0.72 -1.3
177,215 + HMPREF1078_RS08065 0.72 -2.4
177,215 + HMPREF1078_RS08065 0.72 -1.1
177,215 + HMPREF1078_RS08065 0.72 -0.1
177,215 + HMPREF1078_RS08065 0.72 +0.3
177,216 - HMPREF1078_RS08065 0.73 -0.1
177,216 - HMPREF1078_RS08065 0.73 -1.2
177,216 - HMPREF1078_RS08065 0.73 -0.6
177,216 - HMPREF1078_RS08065 0.73 +0.3
177,216 - HMPREF1078_RS08065 0.73 -0.3
177,219 + HMPREF1078_RS08065 0.73 +0.3
177,219 + HMPREF1078_RS08065 0.73 -1.6
177,219 + HMPREF1078_RS08065 0.73 +0.7
177,219 + HMPREF1078_RS08065 0.73 -0.9
177,220 - HMPREF1078_RS08065 0.73 +0.7
177,220 - HMPREF1078_RS08065 0.73 -1.1
177,220 - HMPREF1078_RS08065 0.73 -1.6
177,220 - HMPREF1078_RS08065 0.73 +1.3
177,220 - HMPREF1078_RS08065 0.73 -0.2
177,238 + HMPREF1078_RS08065 0.74 -0.7
177,289 + HMPREF1078_RS08065 0.78 -1.9
177,289 + HMPREF1078_RS08065 0.78 -0.6
177,290 - HMPREF1078_RS08065 0.79 -1.8
177,398 + HMPREF1078_RS08065 0.87 -0.6
177,398 + HMPREF1078_RS08065 0.87 -2.5
177,398 + HMPREF1078_RS08065 0.87 -0.6
177,398 + HMPREF1078_RS08065 0.87 -0.5
177,398 + HMPREF1078_RS08065 0.87 -0.4
177,398 + HMPREF1078_RS08065 0.87 -0.6
177,399 - HMPREF1078_RS08065 0.87 -1.3
177,399 - HMPREF1078_RS08065 0.87 -1.2
177,399 - HMPREF1078_RS08065 0.87 -1.4
177,399 - HMPREF1078_RS08065 0.87 +0.4
177,399 - HMPREF1078_RS08065 0.87 -0.4
177,399 - HMPREF1078_RS08065 0.87 -2.5
177,399 - HMPREF1078_RS08065 0.87 -0.8
177,423 - HMPREF1078_RS08065 0.89 +0.2
177,487 + +1.0
177,487 + +1.9
177,487 + -1.1
177,488 - -1.8
177,539 - -1.9
177,679 + HMPREF1078_RS08070 0.11 +0.7
177,679 + HMPREF1078_RS08070 0.11 -1.8
177,691 + HMPREF1078_RS08070 0.12 +0.0
177,762 + HMPREF1078_RS08070 0.19 +0.5
177,762 + HMPREF1078_RS08070 0.19 +0.8
177,763 - HMPREF1078_RS08070 0.19 -2.6
177,818 + HMPREF1078_RS08070 0.24 -1.4
178,034 + HMPREF1078_RS08070 0.43 -0.5
178,040 + HMPREF1078_RS08070 0.44 -1.8
178,041 - HMPREF1078_RS08070 0.44 -0.9
178,047 - HMPREF1078_RS08070 0.44 +0.2
178,063 + HMPREF1078_RS08070 0.46 -1.8
178,136 - HMPREF1078_RS08070 0.52 +0.3
178,136 - HMPREF1078_RS08070 0.52 -0.6
178,136 - HMPREF1078_RS08070 0.52 +0.4
178,179 + HMPREF1078_RS08070 0.56 -2.3
178,179 + HMPREF1078_RS08070 0.56 -0.8
178,180 - HMPREF1078_RS08070 0.56 -0.1
178,220 + HMPREF1078_RS08070 0.60 +0.0
178,220 + HMPREF1078_RS08070 0.60 +1.1
178,225 - HMPREF1078_RS08070 0.60 -0.9
178,233 - HMPREF1078_RS08070 0.61 -0.6
178,233 - HMPREF1078_RS08070 0.61 +0.7
178,237 - HMPREF1078_RS08070 0.61 -2.4
178,447 - HMPREF1078_RS08070 0.80 -1.9
178,464 - HMPREF1078_RS08070 0.81 -0.3
178,464 - HMPREF1078_RS08070 0.81 -1.2
178,466 + HMPREF1078_RS08070 0.82 -0.6
178,514 + HMPREF1078_RS08070 0.86 -0.6
178,515 - HMPREF1078_RS08070 0.86 -0.3
178,515 - HMPREF1078_RS08070 0.86 -1.1
178,563 - +1.3
178,674 + -1.6
178,713 + -0.8
178,794 - HMPREF1078_RS08075 0.12 +0.7
178,917 + HMPREF1078_RS08075 0.25 +0.7
179,583 - +0.3
179,641 + -1.7
179,641 + +0.5
179,660 + -1.5

Or see this region's nucleotide sequence