Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS06210

Experiment: Dextrin from potato starch 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS06205 and HMPREF1078_RS06210 are separated by 134 nucleotidesHMPREF1078_RS06210 and HMPREF1078_RS06215 are separated by 13 nucleotides HMPREF1078_RS06205: HMPREF1078_RS06205 - ROK family transcriptional regulator, at 596,502 to 597,716 _RS06205 HMPREF1078_RS06210: HMPREF1078_RS06210 - dihydrodipicolinate synthase family protein, at 597,851 to 598,768 _RS06210 HMPREF1078_RS06215: HMPREF1078_RS06215 - AGE family epimerase/isomerase, at 598,782 to 599,984 _RS06215 Position (kb) 597 598 599Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 596.865 kb on - strand, within HMPREF1078_RS06205at 596.936 kb on + strand, within HMPREF1078_RS06205at 596.937 kb on - strand, within HMPREF1078_RS06205at 596.942 kb on - strand, within HMPREF1078_RS06205at 596.942 kb on - strand, within HMPREF1078_RS06205at 596.991 kb on + strand, within HMPREF1078_RS06205at 596.991 kb on + strand, within HMPREF1078_RS06205at 596.993 kb on + strand, within HMPREF1078_RS06205at 596.993 kb on + strand, within HMPREF1078_RS06205at 596.997 kb on + strand, within HMPREF1078_RS06205at 596.997 kb on + strand, within HMPREF1078_RS06205at 596.997 kb on + strand, within HMPREF1078_RS06205at 597.009 kb on + strand, within HMPREF1078_RS06205at 597.106 kb on - strand, within HMPREF1078_RS06205at 597.107 kb on + strand, within HMPREF1078_RS06205at 597.107 kb on + strand, within HMPREF1078_RS06205at 597.107 kb on + strand, within HMPREF1078_RS06205at 597.107 kb on + strand, within HMPREF1078_RS06205at 597.108 kb on - strand, within HMPREF1078_RS06205at 597.122 kb on - strand, within HMPREF1078_RS06205at 597.172 kb on + strand, within HMPREF1078_RS06205at 597.172 kb on + strand, within HMPREF1078_RS06205at 597.172 kb on + strand, within HMPREF1078_RS06205at 597.173 kb on - strand, within HMPREF1078_RS06205at 597.173 kb on - strand, within HMPREF1078_RS06205at 597.173 kb on - strand, within HMPREF1078_RS06205at 597.176 kb on + strand, within HMPREF1078_RS06205at 597.176 kb on + strand, within HMPREF1078_RS06205at 597.177 kb on - strand, within HMPREF1078_RS06205at 597.195 kb on + strand, within HMPREF1078_RS06205at 597.262 kb on + strand, within HMPREF1078_RS06205at 597.262 kb on + strand, within HMPREF1078_RS06205at 597.263 kb on - strand, within HMPREF1078_RS06205at 597.263 kb on - strand, within HMPREF1078_RS06205at 597.263 kb on - strand, within HMPREF1078_RS06205at 597.263 kb on - strand, within HMPREF1078_RS06205at 597.263 kb on - strand, within HMPREF1078_RS06205at 597.324 kb on - strand, within HMPREF1078_RS06205at 597.332 kb on - strand, within HMPREF1078_RS06205at 597.362 kb on - strand, within HMPREF1078_RS06205at 597.436 kb on + strand, within HMPREF1078_RS06205at 597.436 kb on + strand, within HMPREF1078_RS06205at 597.436 kb on + strand, within HMPREF1078_RS06205at 597.436 kb on + strand, within HMPREF1078_RS06205at 597.436 kb on + strand, within HMPREF1078_RS06205at 597.437 kb on - strand, within HMPREF1078_RS06205at 597.437 kb on - strand, within HMPREF1078_RS06205at 597.437 kb on - strand, within HMPREF1078_RS06205at 597.437 kb on - strand, within HMPREF1078_RS06205at 597.485 kb on + strand, within HMPREF1078_RS06205at 597.486 kb on - strand, within HMPREF1078_RS06205at 597.527 kb on - strand, within HMPREF1078_RS06205at 597.548 kb on - strand, within HMPREF1078_RS06205at 597.558 kb on + strand, within HMPREF1078_RS06205at 597.558 kb on + strand, within HMPREF1078_RS06205at 597.559 kb on - strand, within HMPREF1078_RS06205at 597.559 kb on - strand, within HMPREF1078_RS06205at 597.585 kb on - strand, within HMPREF1078_RS06205at 597.644 kb on - strandat 597.644 kb on - strandat 597.689 kb on + strandat 597.690 kb on - strandat 597.707 kb on - strandat 597.707 kb on - strandat 597.734 kb on + strandat 597.772 kb on - strandat 597.804 kb on + strandat 597.826 kb on + strandat 597.870 kb on + strandat 597.871 kb on - strandat 597.896 kb on + strandat 597.897 kb on - strandat 597.913 kb on - strandat 597.935 kb on + strandat 597.935 kb on + strandat 597.977 kb on - strand, within HMPREF1078_RS06210at 597.977 kb on - strand, within HMPREF1078_RS06210at 598.003 kb on + strand, within HMPREF1078_RS06210at 598.004 kb on - strand, within HMPREF1078_RS06210at 598.004 kb on - strand, within HMPREF1078_RS06210at 598.047 kb on + strand, within HMPREF1078_RS06210at 598.048 kb on - strand, within HMPREF1078_RS06210at 598.048 kb on - strand, within HMPREF1078_RS06210at 598.081 kb on - strand, within HMPREF1078_RS06210at 598.081 kb on - strand, within HMPREF1078_RS06210at 598.086 kb on + strand, within HMPREF1078_RS06210at 598.115 kb on - strand, within HMPREF1078_RS06210at 598.253 kb on + strand, within HMPREF1078_RS06210at 598.254 kb on - strand, within HMPREF1078_RS06210at 598.256 kb on + strand, within HMPREF1078_RS06210at 598.256 kb on + strand, within HMPREF1078_RS06210at 598.256 kb on + strand, within HMPREF1078_RS06210at 598.257 kb on - strand, within HMPREF1078_RS06210at 598.257 kb on - strand, within HMPREF1078_RS06210at 598.257 kb on - strand, within HMPREF1078_RS06210at 598.352 kb on + strand, within HMPREF1078_RS06210at 598.353 kb on - strand, within HMPREF1078_RS06210at 598.354 kb on + strand, within HMPREF1078_RS06210at 598.354 kb on + strand, within HMPREF1078_RS06210at 598.354 kb on + strand, within HMPREF1078_RS06210at 598.354 kb on + strand, within HMPREF1078_RS06210at 598.354 kb on + strand, within HMPREF1078_RS06210at 598.355 kb on - strand, within HMPREF1078_RS06210at 598.355 kb on - strand, within HMPREF1078_RS06210at 598.355 kb on - strand, within HMPREF1078_RS06210at 598.355 kb on - strand, within HMPREF1078_RS06210at 598.355 kb on - strand, within HMPREF1078_RS06210at 598.358 kb on + strand, within HMPREF1078_RS06210at 598.358 kb on + strand, within HMPREF1078_RS06210at 598.358 kb on - strand, within HMPREF1078_RS06210at 598.359 kb on - strand, within HMPREF1078_RS06210at 598.359 kb on - strand, within HMPREF1078_RS06210at 598.359 kb on - strand, within HMPREF1078_RS06210at 598.359 kb on - strand, within HMPREF1078_RS06210at 598.359 kb on - strand, within HMPREF1078_RS06210at 598.359 kb on - strand, within HMPREF1078_RS06210at 598.377 kb on - strand, within HMPREF1078_RS06210at 598.392 kb on + strand, within HMPREF1078_RS06210at 598.393 kb on - strand, within HMPREF1078_RS06210at 598.396 kb on + strand, within HMPREF1078_RS06210at 598.397 kb on - strand, within HMPREF1078_RS06210at 598.414 kb on + strand, within HMPREF1078_RS06210at 598.818 kb on + strandat 598.833 kb on + strandat 598.833 kb on + strandat 598.998 kb on + strand, within HMPREF1078_RS06215at 598.998 kb on + strand, within HMPREF1078_RS06215at 599.098 kb on - strand, within HMPREF1078_RS06215at 599.250 kb on + strand, within HMPREF1078_RS06215at 599.250 kb on + strand, within HMPREF1078_RS06215at 599.251 kb on - strand, within HMPREF1078_RS06215at 599.410 kb on + strand, within HMPREF1078_RS06215at 599.587 kb on + strand, within HMPREF1078_RS06215at 599.653 kb on - strand, within HMPREF1078_RS06215at 599.657 kb on + strand, within HMPREF1078_RS06215at 599.657 kb on + strand, within HMPREF1078_RS06215at 599.657 kb on + strand, within HMPREF1078_RS06215at 599.745 kb on + strand, within HMPREF1078_RS06215

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Per-strain Table

Position Strand Gene LocusTag Fraction Dextrin from potato starch 2.5 mg/mL (C)
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596,865 - HMPREF1078_RS06205 0.30 -0.0
596,936 + HMPREF1078_RS06205 0.36 -1.0
596,937 - HMPREF1078_RS06205 0.36 +1.0
596,942 - HMPREF1078_RS06205 0.36 -1.0
596,942 - HMPREF1078_RS06205 0.36 -0.8
596,991 + HMPREF1078_RS06205 0.40 +0.4
596,991 + HMPREF1078_RS06205 0.40 +0.2
596,993 + HMPREF1078_RS06205 0.40 -0.2
596,993 + HMPREF1078_RS06205 0.40 +0.6
596,997 + HMPREF1078_RS06205 0.41 +1.3
596,997 + HMPREF1078_RS06205 0.41 +0.1
596,997 + HMPREF1078_RS06205 0.41 -0.3
597,009 + HMPREF1078_RS06205 0.42 -0.9
597,106 - HMPREF1078_RS06205 0.50 +0.2
597,107 + HMPREF1078_RS06205 0.50 -2.7
597,107 + HMPREF1078_RS06205 0.50 -2.7
597,107 + HMPREF1078_RS06205 0.50 -2.2
597,107 + HMPREF1078_RS06205 0.50 +1.3
597,108 - HMPREF1078_RS06205 0.50 +0.5
597,122 - HMPREF1078_RS06205 0.51 -1.1
597,172 + HMPREF1078_RS06205 0.55 -0.3
597,172 + HMPREF1078_RS06205 0.55 -2.7
597,172 + HMPREF1078_RS06205 0.55 +0.2
597,173 - HMPREF1078_RS06205 0.55 -1.8
597,173 - HMPREF1078_RS06205 0.55 -1.5
597,173 - HMPREF1078_RS06205 0.55 -0.8
597,176 + HMPREF1078_RS06205 0.55 +0.5
597,176 + HMPREF1078_RS06205 0.55 -0.9
597,177 - HMPREF1078_RS06205 0.56 -0.4
597,195 + HMPREF1078_RS06205 0.57 -0.2
597,262 + HMPREF1078_RS06205 0.63 -1.1
597,262 + HMPREF1078_RS06205 0.63 -1.2
597,263 - HMPREF1078_RS06205 0.63 -1.4
597,263 - HMPREF1078_RS06205 0.63 -0.4
597,263 - HMPREF1078_RS06205 0.63 -1.0
597,263 - HMPREF1078_RS06205 0.63 +0.1
597,263 - HMPREF1078_RS06205 0.63 -3.0
597,324 - HMPREF1078_RS06205 0.68 -2.2
597,332 - HMPREF1078_RS06205 0.68 -0.7
597,362 - HMPREF1078_RS06205 0.71 -2.3
597,436 + HMPREF1078_RS06205 0.77 -1.3
597,436 + HMPREF1078_RS06205 0.77 -1.0
597,436 + HMPREF1078_RS06205 0.77 +1.1
597,436 + HMPREF1078_RS06205 0.77 -0.2
597,436 + HMPREF1078_RS06205 0.77 -1.1
597,437 - HMPREF1078_RS06205 0.77 +0.3
597,437 - HMPREF1078_RS06205 0.77 -1.1
597,437 - HMPREF1078_RS06205 0.77 -1.7
597,437 - HMPREF1078_RS06205 0.77 +0.5
597,485 + HMPREF1078_RS06205 0.81 -1.4
597,486 - HMPREF1078_RS06205 0.81 -0.4
597,527 - HMPREF1078_RS06205 0.84 -0.6
597,548 - HMPREF1078_RS06205 0.86 -0.8
597,558 + HMPREF1078_RS06205 0.87 +0.9
597,558 + HMPREF1078_RS06205 0.87 +1.2
597,559 - HMPREF1078_RS06205 0.87 +1.0
597,559 - HMPREF1078_RS06205 0.87 -3.0
597,585 - HMPREF1078_RS06205 0.89 -0.2
597,644 - -1.4
597,644 - +0.8
597,689 + -0.4
597,690 - +0.2
597,707 - +0.6
597,707 - -0.3
597,734 + -0.8
597,772 - +0.9
597,804 + -0.3
597,826 + +0.8
597,870 + -0.6
597,871 - -1.1
597,896 + +0.7
597,897 - +0.0
597,913 - -1.0
597,935 + -1.2
597,935 + +0.2
597,977 - HMPREF1078_RS06210 0.14 +0.0
597,977 - HMPREF1078_RS06210 0.14 -2.7
598,003 + HMPREF1078_RS06210 0.17 -0.6
598,004 - HMPREF1078_RS06210 0.17 +0.6
598,004 - HMPREF1078_RS06210 0.17 +0.8
598,047 + HMPREF1078_RS06210 0.21 +0.9
598,048 - HMPREF1078_RS06210 0.21 -0.0
598,048 - HMPREF1078_RS06210 0.21 +1.9
598,081 - HMPREF1078_RS06210 0.25 -2.0
598,081 - HMPREF1078_RS06210 0.25 +0.1
598,086 + HMPREF1078_RS06210 0.26 +0.8
598,115 - HMPREF1078_RS06210 0.29 -1.9
598,253 + HMPREF1078_RS06210 0.44 -0.6
598,254 - HMPREF1078_RS06210 0.44 +1.4
598,256 + HMPREF1078_RS06210 0.44 -0.1
598,256 + HMPREF1078_RS06210 0.44 -1.4
598,256 + HMPREF1078_RS06210 0.44 +0.7
598,257 - HMPREF1078_RS06210 0.44 +1.1
598,257 - HMPREF1078_RS06210 0.44 -2.5
598,257 - HMPREF1078_RS06210 0.44 +1.3
598,352 + HMPREF1078_RS06210 0.55 -2.9
598,353 - HMPREF1078_RS06210 0.55 -0.7
598,354 + HMPREF1078_RS06210 0.55 -0.6
598,354 + HMPREF1078_RS06210 0.55 +0.1
598,354 + HMPREF1078_RS06210 0.55 -1.4
598,354 + HMPREF1078_RS06210 0.55 +0.3
598,354 + HMPREF1078_RS06210 0.55 +0.1
598,355 - HMPREF1078_RS06210 0.55 -3.1
598,355 - HMPREF1078_RS06210 0.55 -0.8
598,355 - HMPREF1078_RS06210 0.55 -0.9
598,355 - HMPREF1078_RS06210 0.55 +1.7
598,355 - HMPREF1078_RS06210 0.55 +1.3
598,358 + HMPREF1078_RS06210 0.55 +0.2
598,358 + HMPREF1078_RS06210 0.55 -1.5
598,358 - HMPREF1078_RS06210 0.55 -1.4
598,359 - HMPREF1078_RS06210 0.55 +2.0
598,359 - HMPREF1078_RS06210 0.55 +0.5
598,359 - HMPREF1078_RS06210 0.55 +1.4
598,359 - HMPREF1078_RS06210 0.55 +1.7
598,359 - HMPREF1078_RS06210 0.55 +1.6
598,359 - HMPREF1078_RS06210 0.55 -0.2
598,377 - HMPREF1078_RS06210 0.57 +1.0
598,392 + HMPREF1078_RS06210 0.59 +0.0
598,393 - HMPREF1078_RS06210 0.59 +0.2
598,396 + HMPREF1078_RS06210 0.59 +0.4
598,397 - HMPREF1078_RS06210 0.59 -2.0
598,414 + HMPREF1078_RS06210 0.61 -1.5
598,818 + +0.7
598,833 + +0.2
598,833 + -0.5
598,998 + HMPREF1078_RS06215 0.18 +0.2
598,998 + HMPREF1078_RS06215 0.18 -1.2
599,098 - HMPREF1078_RS06215 0.26 +0.6
599,250 + HMPREF1078_RS06215 0.39 -1.4
599,250 + HMPREF1078_RS06215 0.39 -1.4
599,251 - HMPREF1078_RS06215 0.39 +0.5
599,410 + HMPREF1078_RS06215 0.52 -1.0
599,587 + HMPREF1078_RS06215 0.67 +1.1
599,653 - HMPREF1078_RS06215 0.72 +0.4
599,657 + HMPREF1078_RS06215 0.73 -0.0
599,657 + HMPREF1078_RS06215 0.73 -0.1
599,657 + HMPREF1078_RS06215 0.73 +0.5
599,745 + HMPREF1078_RS06215 0.80 +0.7

Or see this region's nucleotide sequence