Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_020615

Experiment: Dimethylsulfoniopropionate sulfur source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_020610 and TX73_020615 are separated by 126 nucleotidesTX73_020615 and TX73_020620 are separated by 57 nucleotides TX73_020610: TX73_020610 - murein biosynthesis integral membrane protein MurJ, at 4,496,913 to 4,498,442 _020610 TX73_020615: TX73_020615 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 4,498,569 to 4,499,720 _020615 TX73_020620: TX73_020620 - Gfo/Idh/MocA family oxidoreductase, at 4,499,778 to 4,500,773 _020620 Position (kb) 4498 4499 4500Strain fitness (log2 ratio) -1 0 1at 4498.565 kb on + strandat 4498.567 kb on - strandat 4498.574 kb on + strandat 4498.594 kb on + strandat 4498.602 kb on - strandat 4498.602 kb on - strandat 4499.754 kb on - strandat 4499.767 kb on - strandat 4499.798 kb on + strandat 4499.831 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Dimethylsulfoniopropionate sulfur source
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4,498,565 + +0.3
4,498,567 - +0.4
4,498,574 + -1.0
4,498,594 + -0.1
4,498,602 - -0.4
4,498,602 - +0.3
4,499,754 - -0.9
4,499,767 - +0.4
4,499,798 + +1.1
4,499,831 + -1.5

Or see this region's nucleotide sequence