Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_000615

Experiment: Thiamine HCl sulfur source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_000600 and TX73_000605 overlap by 5 nucleotidesTX73_000605 and TX73_000610 are separated by 25 nucleotidesTX73_000610 and TX73_000615 are separated by 4 nucleotidesTX73_000615 and TX73_000620 are separated by 7 nucleotidesTX73_000620 and TX73_000625 are separated by 92 nucleotides TX73_000600: TX73_000600 - GDP-mannose 4,6-dehydratase, at 132,388 to 132,906 _000600 TX73_000605: TX73_000605 - GDP-mannose 4,6-dehydratase, at 132,902 to 133,303 _000605 TX73_000610: TX73_000610 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 133,329 to 133,886 _000610 TX73_000615: TX73_000615 - dTDP-4-dehydrorhamnose reductase, at 133,891 to 134,784 _000615 TX73_000620: TX73_000620 - glucose-1-phosphate thymidylyltransferase RfbA, at 134,792 to 135,661 _000620 TX73_000625: TX73_000625 - hypothetical protein, at 135,754 to 136,602 _000625 Position (kb) 133 134 135Strain fitness (log2 ratio) -2 -1 0 1 2 3at 133.026 kb on - strand, within TX73_000605at 133.080 kb on + strand, within TX73_000605at 133.164 kb on - strand, within TX73_000605at 133.215 kb on - strand, within TX73_000605at 133.230 kb on - strand, within TX73_000605at 133.260 kb on + strand, within TX73_000605at 133.260 kb on + strand, within TX73_000605at 133.265 kb on + strandat 133.268 kb on - strandat 133.268 kb on - strandat 133.268 kb on - strandat 133.342 kb on + strandat 133.385 kb on - strand, within TX73_000610at 133.426 kb on - strand, within TX73_000610at 133.523 kb on - strand, within TX73_000610at 133.541 kb on + strand, within TX73_000610at 133.549 kb on - strand, within TX73_000610at 133.608 kb on - strand, within TX73_000610at 133.620 kb on - strand, within TX73_000610at 133.770 kb on + strand, within TX73_000610at 133.770 kb on + strand, within TX73_000610at 133.770 kb on + strand, within TX73_000610at 133.788 kb on - strand, within TX73_000610at 133.804 kb on - strand, within TX73_000610at 133.899 kb on - strandat 133.951 kb on + strandat 133.988 kb on - strand, within TX73_000615at 134.021 kb on + strand, within TX73_000615at 134.024 kb on - strand, within TX73_000615at 134.034 kb on - strand, within TX73_000615at 134.044 kb on - strand, within TX73_000615at 134.088 kb on + strand, within TX73_000615at 134.091 kb on - strand, within TX73_000615at 134.099 kb on + strand, within TX73_000615at 134.200 kb on + strand, within TX73_000615at 134.237 kb on - strand, within TX73_000615at 134.247 kb on - strand, within TX73_000615at 134.248 kb on + strand, within TX73_000615at 134.298 kb on + strand, within TX73_000615at 134.323 kb on - strand, within TX73_000615at 134.333 kb on + strand, within TX73_000615at 134.333 kb on + strand, within TX73_000615at 134.341 kb on - strand, within TX73_000615at 134.341 kb on - strand, within TX73_000615at 134.377 kb on + strand, within TX73_000615at 134.416 kb on + strand, within TX73_000615at 134.467 kb on + strand, within TX73_000615at 134.563 kb on - strand, within TX73_000615at 134.589 kb on + strand, within TX73_000615at 134.745 kb on + strandat 134.745 kb on + strandat 134.748 kb on - strandat 134.823 kb on + strandat 134.823 kb on + strandat 134.831 kb on - strandat 134.831 kb on - strandat 134.852 kb on - strandat 134.936 kb on + strand, within TX73_000620at 134.944 kb on - strand, within TX73_000620at 134.981 kb on + strand, within TX73_000620at 135.021 kb on + strand, within TX73_000620at 135.024 kb on - strand, within TX73_000620at 135.031 kb on + strand, within TX73_000620at 135.031 kb on + strand, within TX73_000620at 135.039 kb on - strand, within TX73_000620at 135.039 kb on - strand, within TX73_000620at 135.039 kb on - strand, within TX73_000620at 135.053 kb on - strand, within TX73_000620at 135.063 kb on - strand, within TX73_000620at 135.192 kb on + strand, within TX73_000620at 135.223 kb on - strand, within TX73_000620at 135.275 kb on + strand, within TX73_000620at 135.284 kb on + strand, within TX73_000620at 135.307 kb on - strand, within TX73_000620at 135.378 kb on + strand, within TX73_000620at 135.437 kb on + strand, within TX73_000620at 135.517 kb on + strand, within TX73_000620at 135.519 kb on - strand, within TX73_000620at 135.524 kb on + strand, within TX73_000620at 135.540 kb on + strand, within TX73_000620at 135.548 kb on - strand, within TX73_000620at 135.550 kb on - strand, within TX73_000620at 135.576 kb on + strandat 135.579 kb on - strandat 135.585 kb on + strandat 135.655 kb on + strandat 135.663 kb on - strandat 135.663 kb on - strandat 135.673 kb on - strandat 135.715 kb on - strandat 135.715 kb on - strandat 135.746 kb on - strandat 135.768 kb on - strandat 135.775 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thiamine HCl sulfur source
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133,026 - TX73_000605 0.31 -0.2
133,080 + TX73_000605 0.44 +0.6
133,164 - TX73_000605 0.65 +1.8
133,215 - TX73_000605 0.78 +0.3
133,230 - TX73_000605 0.82 +0.1
133,260 + TX73_000605 0.89 +0.4
133,260 + TX73_000605 0.89 -0.3
133,265 + -0.1
133,268 - +0.4
133,268 - +0.3
133,268 - +0.3
133,342 + -1.8
133,385 - TX73_000610 0.10 +0.1
133,426 - TX73_000610 0.17 -0.9
133,523 - TX73_000610 0.35 -1.3
133,541 + TX73_000610 0.38 -0.4
133,549 - TX73_000610 0.39 -0.3
133,608 - TX73_000610 0.50 -0.2
133,620 - TX73_000610 0.52 -1.1
133,770 + TX73_000610 0.79 -0.7
133,770 + TX73_000610 0.79 +1.0
133,770 + TX73_000610 0.79 -0.0
133,788 - TX73_000610 0.82 -0.2
133,804 - TX73_000610 0.85 +0.2
133,899 - -1.0
133,951 + -0.3
133,988 - TX73_000615 0.11 -0.5
134,021 + TX73_000615 0.15 -0.8
134,024 - TX73_000615 0.15 -1.1
134,034 - TX73_000615 0.16 +1.5
134,044 - TX73_000615 0.17 +0.7
134,088 + TX73_000615 0.22 -0.4
134,091 - TX73_000615 0.22 -0.1
134,099 + TX73_000615 0.23 +0.4
134,200 + TX73_000615 0.35 -0.8
134,237 - TX73_000615 0.39 -0.6
134,247 - TX73_000615 0.40 +2.8
134,248 + TX73_000615 0.40 -1.3
134,298 + TX73_000615 0.46 -0.9
134,323 - TX73_000615 0.48 -1.0
134,333 + TX73_000615 0.49 -0.9
134,333 + TX73_000615 0.49 -0.4
134,341 - TX73_000615 0.50 -1.6
134,341 - TX73_000615 0.50 -0.3
134,377 + TX73_000615 0.54 +0.8
134,416 + TX73_000615 0.59 -0.3
134,467 + TX73_000615 0.64 +2.0
134,563 - TX73_000615 0.75 -0.9
134,589 + TX73_000615 0.78 -0.4
134,745 + -0.0
134,745 + -0.4
134,748 - -0.2
134,823 + -1.3
134,823 + -0.1
134,831 - -0.6
134,831 - +0.1
134,852 - +0.0
134,936 + TX73_000620 0.17 +0.1
134,944 - TX73_000620 0.17 +0.8
134,981 + TX73_000620 0.22 -0.2
135,021 + TX73_000620 0.26 +0.8
135,024 - TX73_000620 0.27 +0.7
135,031 + TX73_000620 0.27 +0.4
135,031 + TX73_000620 0.27 -0.0
135,039 - TX73_000620 0.28 +0.3
135,039 - TX73_000620 0.28 +0.9
135,039 - TX73_000620 0.28 -0.1
135,053 - TX73_000620 0.30 +0.0
135,063 - TX73_000620 0.31 +0.3
135,192 + TX73_000620 0.46 -0.3
135,223 - TX73_000620 0.50 -0.5
135,275 + TX73_000620 0.56 +0.0
135,284 + TX73_000620 0.57 +0.9
135,307 - TX73_000620 0.59 +1.0
135,378 + TX73_000620 0.67 -0.0
135,437 + TX73_000620 0.74 +0.4
135,517 + TX73_000620 0.83 +0.0
135,519 - TX73_000620 0.84 -0.5
135,524 + TX73_000620 0.84 +0.4
135,540 + TX73_000620 0.86 -0.0
135,548 - TX73_000620 0.87 +0.6
135,550 - TX73_000620 0.87 +0.6
135,576 + +0.0
135,579 - +0.2
135,585 + -0.6
135,655 + +0.3
135,663 - +1.2
135,663 - +0.2
135,673 - -0.2
135,715 - +0.5
135,715 - +0.1
135,746 - +0.5
135,768 - +0.2
135,775 - +0.5

Or see this region's nucleotide sequence