Experiment: Thiamine HCl sulfur source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_024905 and TX73_024910 are separated by 507 nucleotides TX73_024910 and TX73_024915 are separated by 19 nucleotides
TX73_024905: TX73_024905 - sigma-70 family RNA polymerase sigma factor, at 5,410,063 to 5,410,674
_024905
TX73_024910: TX73_024910 - cytochrome ubiquinol oxidase subunit I, at 5,411,182 to 5,412,588
_024910
TX73_024915: TX73_024915 - cytochrome d ubiquinol oxidase subunit II, at 5,412,608 to 5,413,612
_024915
Position (kb) 5411
5412
5413 Strain fitness (log2 ratio) -2
-1
0
1 at 5410.209 kb on + strand, within TX73_024905 at 5410.231 kb on + strand, within TX73_024905 at 5410.239 kb on - strand, within TX73_024905 at 5410.239 kb on - strand, within TX73_024905 at 5410.247 kb on + strand, within TX73_024905 at 5410.255 kb on - strand, within TX73_024905 at 5410.290 kb on - strand, within TX73_024905 at 5410.300 kb on - strand, within TX73_024905 at 5410.315 kb on + strand, within TX73_024905 at 5410.321 kb on + strand, within TX73_024905 at 5410.321 kb on - strand, within TX73_024905 at 5410.328 kb on - strand, within TX73_024905 at 5410.329 kb on - strand, within TX73_024905 at 5410.329 kb on - strand, within TX73_024905 at 5410.331 kb on + strand, within TX73_024905 at 5410.350 kb on + strand, within TX73_024905 at 5410.350 kb on + strand, within TX73_024905 at 5410.350 kb on + strand, within TX73_024905 at 5410.350 kb on + strand, within TX73_024905 at 5410.358 kb on - strand, within TX73_024905 at 5410.358 kb on - strand, within TX73_024905 at 5410.367 kb on + strand, within TX73_024905 at 5410.367 kb on + strand, within TX73_024905 at 5410.427 kb on + strand, within TX73_024905 at 5410.447 kb on + strand, within TX73_024905 at 5410.447 kb on + strand, within TX73_024905 at 5410.455 kb on - strand, within TX73_024905 at 5410.477 kb on - strand, within TX73_024905 at 5410.492 kb on + strand, within TX73_024905 at 5410.568 kb on - strand, within TX73_024905 at 5410.571 kb on + strand, within TX73_024905 at 5410.582 kb on + strand, within TX73_024905 at 5410.582 kb on + strand, within TX73_024905 at 5410.587 kb on + strand, within TX73_024905 at 5410.590 kb on - strand, within TX73_024905 at 5410.590 kb on - strand, within TX73_024905 at 5410.597 kb on - strand, within TX73_024905 at 5410.599 kb on + strand, within TX73_024905 at 5410.608 kb on + strand, within TX73_024905 at 5410.616 kb on + strand at 5410.617 kb on - strand at 5410.624 kb on - strand at 5410.654 kb on + strand at 5410.654 kb on + strand at 5410.662 kb on - strand at 5410.662 kb on - strand at 5410.669 kb on + strand at 5410.691 kb on + strand at 5410.711 kb on + strand at 5410.719 kb on + strand at 5410.727 kb on - strand at 5410.728 kb on + strand at 5410.729 kb on + strand at 5410.729 kb on + strand at 5410.729 kb on + strand at 5410.729 kb on + strand at 5410.737 kb on - strand at 5410.737 kb on - strand at 5410.773 kb on - strand at 5410.777 kb on + strand at 5410.780 kb on - strand at 5410.845 kb on + strand at 5410.850 kb on + strand at 5410.864 kb on - strand at 5410.912 kb on + strand at 5410.922 kb on + strand at 5410.925 kb on + strand at 5410.930 kb on - strand at 5410.930 kb on - strand at 5410.935 kb on + strand at 5410.942 kb on - strand at 5410.945 kb on + strand at 5410.945 kb on - strand at 5410.998 kb on + strand at 5411.003 kb on + strand at 5411.065 kb on + strand at 5411.068 kb on - strand at 5411.068 kb on - strand at 5411.068 kb on - strand at 5411.073 kb on - strand at 5411.132 kb on - strand at 5411.174 kb on + strand at 5411.192 kb on + strand at 5411.214 kb on - strand at 5411.215 kb on + strand at 5411.282 kb on - strand at 5411.303 kb on - strand at 5411.310 kb on + strand at 5411.318 kb on - strand at 5411.329 kb on + strand, within TX73_024910 at 5411.329 kb on + strand, within TX73_024910 at 5411.337 kb on - strand, within TX73_024910 at 5411.337 kb on - strand, within TX73_024910 at 5411.356 kb on + strand, within TX73_024910 at 5411.392 kb on + strand, within TX73_024910 at 5411.392 kb on + strand, within TX73_024910 at 5411.392 kb on + strand, within TX73_024910 at 5411.451 kb on + strand, within TX73_024910 at 5411.456 kb on + strand, within TX73_024910 at 5411.480 kb on + strand, within TX73_024910 at 5411.480 kb on + strand, within TX73_024910 at 5411.483 kb on + strand, within TX73_024910 at 5411.487 kb on - strand, within TX73_024910 at 5411.488 kb on - strand, within TX73_024910 at 5411.510 kb on + strand, within TX73_024910 at 5411.525 kb on + strand, within TX73_024910 at 5411.535 kb on + strand, within TX73_024910 at 5411.540 kb on + strand, within TX73_024910 at 5411.540 kb on + strand, within TX73_024910 at 5411.540 kb on + strand, within TX73_024910 at 5411.547 kb on + strand, within TX73_024910 at 5411.548 kb on - strand, within TX73_024910 at 5411.555 kb on + strand, within TX73_024910 at 5411.568 kb on + strand, within TX73_024910 at 5411.576 kb on - strand, within TX73_024910 at 5411.604 kb on + strand, within TX73_024910 at 5411.654 kb on - strand, within TX73_024910 at 5411.656 kb on + strand, within TX73_024910 at 5411.665 kb on - strand, within TX73_024910 at 5411.685 kb on + strand, within TX73_024910 at 5411.735 kb on + strand, within TX73_024910 at 5411.756 kb on - strand, within TX73_024910 at 5411.769 kb on - strand, within TX73_024910 at 5411.798 kb on + strand, within TX73_024910 at 5411.816 kb on + strand, within TX73_024910 at 5411.816 kb on + strand, within TX73_024910 at 5411.920 kb on - strand, within TX73_024910 at 5411.921 kb on + strand, within TX73_024910 at 5411.928 kb on + strand, within TX73_024910 at 5411.937 kb on + strand, within TX73_024910 at 5411.965 kb on + strand, within TX73_024910 at 5411.965 kb on + strand, within TX73_024910 at 5411.982 kb on - strand, within TX73_024910 at 5411.989 kb on + strand, within TX73_024910 at 5411.994 kb on + strand, within TX73_024910 at 5412.008 kb on + strand, within TX73_024910 at 5412.013 kb on + strand, within TX73_024910 at 5412.013 kb on + strand, within TX73_024910 at 5412.021 kb on - strand, within TX73_024910 at 5412.033 kb on + strand, within TX73_024910 at 5412.041 kb on - strand, within TX73_024910 at 5412.081 kb on - strand, within TX73_024910 at 5412.113 kb on - strand, within TX73_024910 at 5412.118 kb on - strand, within TX73_024910 at 5412.118 kb on - strand, within TX73_024910 at 5412.149 kb on + strand, within TX73_024910 at 5412.156 kb on - strand, within TX73_024910 at 5412.167 kb on - strand, within TX73_024910 at 5412.207 kb on + strand, within TX73_024910 at 5412.212 kb on + strand, within TX73_024910 at 5412.214 kb on - strand, within TX73_024910 at 5412.220 kb on - strand, within TX73_024910 at 5412.261 kb on - strand, within TX73_024910 at 5412.264 kb on - strand, within TX73_024910 at 5412.273 kb on + strand, within TX73_024910 at 5412.347 kb on - strand, within TX73_024910 at 5412.368 kb on + strand, within TX73_024910 at 5412.382 kb on - strand, within TX73_024910 at 5412.399 kb on + strand, within TX73_024910 at 5412.408 kb on - strand, within TX73_024910 at 5412.422 kb on + strand, within TX73_024910 at 5412.422 kb on + strand, within TX73_024910 at 5412.430 kb on - strand, within TX73_024910 at 5412.430 kb on - strand, within TX73_024910 at 5412.443 kb on - strand, within TX73_024910 at 5412.447 kb on + strand, within TX73_024910 at 5412.455 kb on - strand at 5412.462 kb on + strand at 5412.462 kb on + strand at 5412.527 kb on + strand at 5412.592 kb on + strand at 5412.592 kb on + strand at 5412.600 kb on - strand at 5412.607 kb on - strand at 5412.607 kb on - strand at 5412.611 kb on + strand at 5412.612 kb on - strand at 5412.612 kb on - strand at 5412.619 kb on - strand at 5412.619 kb on - strand at 5412.648 kb on + strand at 5412.656 kb on + strand at 5412.661 kb on + strand at 5412.664 kb on - strand at 5412.681 kb on - strand at 5412.689 kb on - strand at 5412.689 kb on - strand at 5412.689 kb on - strand at 5412.715 kb on + strand, within TX73_024915 at 5412.715 kb on + strand, within TX73_024915 at 5412.758 kb on + strand, within TX73_024915 at 5412.794 kb on - strand, within TX73_024915 at 5412.799 kb on - strand, within TX73_024915 at 5412.809 kb on - strand, within TX73_024915 at 5412.829 kb on + strand, within TX73_024915 at 5412.834 kb on + strand, within TX73_024915 at 5412.837 kb on - strand, within TX73_024915 at 5412.837 kb on - strand, within TX73_024915 at 5412.837 kb on - strand, within TX73_024915 at 5412.856 kb on + strand, within TX73_024915 at 5412.883 kb on - strand, within TX73_024915 at 5412.885 kb on + strand, within TX73_024915 at 5412.952 kb on - strand, within TX73_024915 at 5412.959 kb on - strand, within TX73_024915 at 5412.969 kb on + strand, within TX73_024915 at 5413.015 kb on + strand, within TX73_024915 at 5413.016 kb on - strand, within TX73_024915 at 5413.023 kb on - strand, within TX73_024915 at 5413.023 kb on - strand, within TX73_024915 at 5413.023 kb on - strand, within TX73_024915 at 5413.038 kb on - strand, within TX73_024915 at 5413.076 kb on + strand, within TX73_024915 at 5413.076 kb on - strand, within TX73_024915 at 5413.082 kb on + strand, within TX73_024915 at 5413.113 kb on + strand, within TX73_024915 at 5413.119 kb on - strand, within TX73_024915 at 5413.123 kb on + strand, within TX73_024915 at 5413.309 kb on + strand, within TX73_024915 at 5413.310 kb on - strand, within TX73_024915 at 5413.325 kb on + strand, within TX73_024915 at 5413.396 kb on + strand, within TX73_024915 at 5413.404 kb on - strand, within TX73_024915 at 5413.411 kb on + strand, within TX73_024915 at 5413.411 kb on + strand, within TX73_024915 at 5413.411 kb on + strand, within TX73_024915 at 5413.411 kb on + strand, within TX73_024915 at 5413.411 kb on + strand, within TX73_024915 at 5413.411 kb on + strand, within TX73_024915 at 5413.413 kb on + strand, within TX73_024915 at 5413.419 kb on - strand, within TX73_024915 at 5413.419 kb on - strand, within TX73_024915 at 5413.419 kb on - strand, within TX73_024915 at 5413.419 kb on - strand, within TX73_024915 at 5413.419 kb on - strand, within TX73_024915 at 5413.419 kb on - strand, within TX73_024915 at 5413.419 kb on - strand, within TX73_024915 at 5413.419 kb on - strand, within TX73_024915 at 5413.419 kb on - strand, within TX73_024915 at 5413.459 kb on + strand, within TX73_024915 at 5413.484 kb on + strand, within TX73_024915 at 5413.535 kb on - strand at 5413.546 kb on + strand at 5413.546 kb on + strand at 5413.546 kb on + strand at 5413.546 kb on + strand at 5413.546 kb on + strand at 5413.554 kb on - strand at 5413.554 kb on - strand at 5413.554 kb on - strand at 5413.554 kb on - strand at 5413.554 kb on - strand at 5413.571 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thiamine HCl sulfur source remove 5,410,209 + TX73_024905 0.24 +0.1 5,410,231 + TX73_024905 0.27 -0.2 5,410,239 - TX73_024905 0.29 -0.9 5,410,239 - TX73_024905 0.29 +0.1 5,410,247 + TX73_024905 0.30 -0.2 5,410,255 - TX73_024905 0.31 -0.6 5,410,290 - TX73_024905 0.37 +0.2 5,410,300 - TX73_024905 0.39 -0.3 5,410,315 + TX73_024905 0.41 -0.0 5,410,321 + TX73_024905 0.42 -0.8 5,410,321 - TX73_024905 0.42 -0.4 5,410,328 - TX73_024905 0.43 -0.2 5,410,329 - TX73_024905 0.43 -0.0 5,410,329 - TX73_024905 0.43 -0.0 5,410,331 + TX73_024905 0.44 +0.1 5,410,350 + TX73_024905 0.47 +0.3 5,410,350 + TX73_024905 0.47 -0.7 5,410,350 + TX73_024905 0.47 +0.2 5,410,350 + TX73_024905 0.47 +0.6 5,410,358 - TX73_024905 0.48 -0.0 5,410,358 - TX73_024905 0.48 -1.0 5,410,367 + TX73_024905 0.50 -0.2 5,410,367 + TX73_024905 0.50 -0.4 5,410,427 + TX73_024905 0.59 +0.8 5,410,447 + TX73_024905 0.63 -0.2 5,410,447 + TX73_024905 0.63 +0.0 5,410,455 - TX73_024905 0.64 -0.5 5,410,477 - TX73_024905 0.68 -1.6 5,410,492 + TX73_024905 0.70 -0.4 5,410,568 - TX73_024905 0.83 -0.2 5,410,571 + TX73_024905 0.83 +0.8 5,410,582 + TX73_024905 0.85 -0.2 5,410,582 + TX73_024905 0.85 -0.3 5,410,587 + TX73_024905 0.86 +0.1 5,410,590 - TX73_024905 0.86 +0.0 5,410,590 - TX73_024905 0.86 +0.0 5,410,597 - TX73_024905 0.87 +0.0 5,410,599 + TX73_024905 0.88 -0.3 5,410,608 + TX73_024905 0.89 -0.5 5,410,616 + -1.0 5,410,617 - +0.4 5,410,624 - +0.3 5,410,654 + -1.5 5,410,654 + +0.2 5,410,662 - -0.4 5,410,662 - -0.0 5,410,669 + +0.1 5,410,691 + +0.1 5,410,711 + +0.1 5,410,719 + -1.0 5,410,727 - +0.5 5,410,728 + -0.4 5,410,729 + +0.1 5,410,729 + -0.5 5,410,729 + -0.8 5,410,729 + -0.0 5,410,737 - -0.8 5,410,737 - -1.0 5,410,773 - -0.4 5,410,777 + +0.7 5,410,780 - -0.4 5,410,845 + -0.5 5,410,850 + -1.8 5,410,864 - -0.3 5,410,912 + +0.5 5,410,922 + +0.2 5,410,925 + -0.5 5,410,930 - +0.4 5,410,930 - +0.1 5,410,935 + +0.4 5,410,942 - -0.7 5,410,945 + -1.0 5,410,945 - +1.0 5,410,998 + -0.6 5,411,003 + -0.9 5,411,065 + +0.0 5,411,068 - -0.6 5,411,068 - -0.1 5,411,068 - +0.3 5,411,073 - -0.2 5,411,132 - -0.3 5,411,174 + +0.2 5,411,192 + -0.3 5,411,214 - -0.7 5,411,215 + -0.2 5,411,282 - -0.6 5,411,303 - -0.4 5,411,310 + +0.1 5,411,318 - +0.1 5,411,329 + TX73_024910 0.10 +0.3 5,411,329 + TX73_024910 0.10 -0.4 5,411,337 - TX73_024910 0.11 -0.2 5,411,337 - TX73_024910 0.11 -0.2 5,411,356 + TX73_024910 0.12 -0.1 5,411,392 + TX73_024910 0.15 +0.4 5,411,392 + TX73_024910 0.15 +0.1 5,411,392 + TX73_024910 0.15 +0.9 5,411,451 + TX73_024910 0.19 -0.2 5,411,456 + TX73_024910 0.19 -0.4 5,411,480 + TX73_024910 0.21 -0.1 5,411,480 + TX73_024910 0.21 -0.2 5,411,483 + TX73_024910 0.21 -0.3 5,411,487 - TX73_024910 0.22 +0.2 5,411,488 - TX73_024910 0.22 -0.2 5,411,510 + TX73_024910 0.23 -0.1 5,411,525 + TX73_024910 0.24 +0.3 5,411,535 + TX73_024910 0.25 -0.1 5,411,540 + TX73_024910 0.25 -0.2 5,411,540 + TX73_024910 0.25 +0.5 5,411,540 + TX73_024910 0.25 -0.1 5,411,547 + TX73_024910 0.26 -0.1 5,411,548 - TX73_024910 0.26 -2.3 5,411,555 + TX73_024910 0.27 -0.6 5,411,568 + TX73_024910 0.27 -1.0 5,411,576 - TX73_024910 0.28 -0.3 5,411,604 + TX73_024910 0.30 -0.0 5,411,654 - TX73_024910 0.34 +0.3 5,411,656 + TX73_024910 0.34 -0.6 5,411,665 - TX73_024910 0.34 -0.8 5,411,685 + TX73_024910 0.36 +0.4 5,411,735 + TX73_024910 0.39 +0.2 5,411,756 - TX73_024910 0.41 +0.3 5,411,769 - TX73_024910 0.42 +0.8 5,411,798 + TX73_024910 0.44 -0.3 5,411,816 + TX73_024910 0.45 +0.3 5,411,816 + TX73_024910 0.45 +0.2 5,411,920 - TX73_024910 0.52 -0.2 5,411,921 + TX73_024910 0.53 -0.8 5,411,928 + TX73_024910 0.53 +0.5 5,411,937 + TX73_024910 0.54 -0.1 5,411,965 + TX73_024910 0.56 +0.1 5,411,965 + TX73_024910 0.56 +0.5 5,411,982 - TX73_024910 0.57 +0.6 5,411,989 + TX73_024910 0.57 +0.3 5,411,994 + TX73_024910 0.58 -0.2 5,412,008 + TX73_024910 0.59 -0.2 5,412,013 + TX73_024910 0.59 -0.8 5,412,013 + TX73_024910 0.59 -0.1 5,412,021 - TX73_024910 0.60 +0.1 5,412,033 + TX73_024910 0.60 -0.0 5,412,041 - TX73_024910 0.61 -0.4 5,412,081 - TX73_024910 0.64 -0.7 5,412,113 - TX73_024910 0.66 +0.3 5,412,118 - TX73_024910 0.67 +0.1 5,412,118 - TX73_024910 0.67 -0.9 5,412,149 + TX73_024910 0.69 -0.1 5,412,156 - TX73_024910 0.69 -1.1 5,412,167 - TX73_024910 0.70 +0.1 5,412,207 + TX73_024910 0.73 +0.2 5,412,212 + TX73_024910 0.73 -1.6 5,412,214 - TX73_024910 0.73 -0.5 5,412,220 - TX73_024910 0.74 -1.3 5,412,261 - TX73_024910 0.77 -0.3 5,412,264 - TX73_024910 0.77 +0.5 5,412,273 + TX73_024910 0.78 -0.9 5,412,347 - TX73_024910 0.83 +0.1 5,412,368 + TX73_024910 0.84 +0.0 5,412,382 - TX73_024910 0.85 -0.9 5,412,399 + TX73_024910 0.86 +0.2 5,412,408 - TX73_024910 0.87 -0.3 5,412,422 + TX73_024910 0.88 -0.2 5,412,422 + TX73_024910 0.88 -0.4 5,412,430 - TX73_024910 0.89 -0.6 5,412,430 - TX73_024910 0.89 -0.3 5,412,443 - TX73_024910 0.90 -0.6 5,412,447 + TX73_024910 0.90 +0.6 5,412,455 - +0.0 5,412,462 + -0.4 5,412,462 + +0.9 5,412,527 + -1.0 5,412,592 + -0.6 5,412,592 + +0.2 5,412,600 - -0.4 5,412,607 - +0.4 5,412,607 - -0.3 5,412,611 + -0.2 5,412,612 - -1.5 5,412,612 - +0.6 5,412,619 - -0.4 5,412,619 - -0.6 5,412,648 + -0.7 5,412,656 + -0.6 5,412,661 + -0.5 5,412,664 - +0.1 5,412,681 - +0.0 5,412,689 - +0.5 5,412,689 - -0.2 5,412,689 - -0.7 5,412,715 + TX73_024915 0.11 -0.2 5,412,715 + TX73_024915 0.11 -0.3 5,412,758 + TX73_024915 0.15 -0.4 5,412,794 - TX73_024915 0.19 -0.1 5,412,799 - TX73_024915 0.19 -0.3 5,412,809 - TX73_024915 0.20 +0.1 5,412,829 + TX73_024915 0.22 -0.4 5,412,834 + TX73_024915 0.22 +1.1 5,412,837 - TX73_024915 0.23 +0.4 5,412,837 - TX73_024915 0.23 +0.3 5,412,837 - TX73_024915 0.23 +0.3 5,412,856 + TX73_024915 0.25 +0.1 5,412,883 - TX73_024915 0.27 +0.5 5,412,885 + TX73_024915 0.28 +0.1 5,412,952 - TX73_024915 0.34 +0.1 5,412,959 - TX73_024915 0.35 -0.2 5,412,969 + TX73_024915 0.36 +0.9 5,413,015 + TX73_024915 0.40 +0.9 5,413,016 - TX73_024915 0.41 +0.2 5,413,023 - TX73_024915 0.41 +0.3 5,413,023 - TX73_024915 0.41 +0.8 5,413,023 - TX73_024915 0.41 -0.4 5,413,038 - TX73_024915 0.43 -0.2 5,413,076 + TX73_024915 0.47 -0.0 5,413,076 - TX73_024915 0.47 +0.4 5,413,082 + TX73_024915 0.47 -0.1 5,413,113 + TX73_024915 0.50 -0.1 5,413,119 - TX73_024915 0.51 -1.1 5,413,123 + TX73_024915 0.51 +0.1 5,413,309 + TX73_024915 0.70 +0.6 5,413,310 - TX73_024915 0.70 +0.3 5,413,325 + TX73_024915 0.71 +0.5 5,413,396 + TX73_024915 0.78 +0.2 5,413,404 - TX73_024915 0.79 -0.9 5,413,411 + TX73_024915 0.80 +0.5 5,413,411 + TX73_024915 0.80 +0.3 5,413,411 + TX73_024915 0.80 -0.4 5,413,411 + TX73_024915 0.80 -1.7 5,413,411 + TX73_024915 0.80 -2.5 5,413,411 + TX73_024915 0.80 -0.6 5,413,413 + TX73_024915 0.80 +0.1 5,413,419 - TX73_024915 0.81 +0.7 5,413,419 - TX73_024915 0.81 +0.2 5,413,419 - TX73_024915 0.81 +0.0 5,413,419 - TX73_024915 0.81 -0.2 5,413,419 - TX73_024915 0.81 -0.3 5,413,419 - TX73_024915 0.81 -0.6 5,413,419 - TX73_024915 0.81 -0.4 5,413,419 - TX73_024915 0.81 -0.5 5,413,419 - TX73_024915 0.81 +0.5 5,413,459 + TX73_024915 0.85 -0.3 5,413,484 + TX73_024915 0.87 +0.1 5,413,535 - -0.8 5,413,546 + +0.5 5,413,546 + -0.1 5,413,546 + +0.2 5,413,546 + +0.1 5,413,546 + -0.9 5,413,554 - -0.2 5,413,554 - -0.2 5,413,554 - +0.8 5,413,554 - +0.2 5,413,554 - -0.6 5,413,571 - +0.1
Or see this region's nucleotide sequence