Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_001470

Experiment: Thiamine HCl sulfur source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_001465 and TX73_001470 are separated by 51 nucleotidesTX73_001470 and TX73_001475 are separated by 39 nucleotidesTX73_001475 and TX73_001480 are separated by 164 nucleotides TX73_001465: TX73_001465 - exodeoxyribonuclease III, at 310,016 to 310,828 _001465 TX73_001470: TX73_001470 - cyclic nucleotide-binding domain-containing protein, at 310,880 to 311,329 _001470 TX73_001475: TX73_001475 - response regulator transcription factor, at 311,369 to 312,055 _001475 TX73_001480: TX73_001480 - L,D-transpeptidase family protein, at 312,220 to 312,783 _001480 Position (kb) 310 311 312Strain fitness (log2 ratio) -3 -2 -1 0 1at 309.901 kb on + strandat 309.929 kb on - strandat 309.929 kb on - strandat 309.945 kb on + strandat 309.987 kb on + strandat 309.988 kb on + strandat 310.013 kb on - strandat 310.027 kb on + strandat 310.027 kb on - strandat 310.042 kb on - strandat 310.050 kb on - strandat 310.092 kb on - strandat 310.173 kb on + strand, within TX73_001465at 310.173 kb on + strand, within TX73_001465at 310.255 kb on + strand, within TX73_001465at 310.263 kb on + strand, within TX73_001465at 310.291 kb on + strand, within TX73_001465at 310.480 kb on - strand, within TX73_001465at 310.520 kb on - strand, within TX73_001465at 310.534 kb on + strand, within TX73_001465at 310.542 kb on - strand, within TX73_001465at 310.552 kb on + strand, within TX73_001465at 310.554 kb on + strand, within TX73_001465at 310.554 kb on + strand, within TX73_001465at 310.556 kb on + strand, within TX73_001465at 310.562 kb on - strand, within TX73_001465at 310.562 kb on - strand, within TX73_001465at 310.566 kb on + strand, within TX73_001465at 310.624 kb on + strand, within TX73_001465at 310.628 kb on - strand, within TX73_001465at 310.635 kb on + strand, within TX73_001465at 310.642 kb on + strand, within TX73_001465at 310.642 kb on + strand, within TX73_001465at 310.642 kb on + strand, within TX73_001465at 310.647 kb on + strand, within TX73_001465at 310.649 kb on + strand, within TX73_001465at 310.650 kb on - strand, within TX73_001465at 310.650 kb on - strand, within TX73_001465at 310.650 kb on - strand, within TX73_001465at 310.650 kb on - strand, within TX73_001465at 310.650 kb on - strand, within TX73_001465at 310.650 kb on - strand, within TX73_001465at 310.650 kb on - strand, within TX73_001465at 310.711 kb on + strand, within TX73_001465at 310.719 kb on - strand, within TX73_001465at 310.727 kb on - strand, within TX73_001465at 310.730 kb on + strand, within TX73_001465at 310.736 kb on - strand, within TX73_001465at 310.740 kb on - strand, within TX73_001465at 310.750 kb on + strandat 310.765 kb on - strandat 310.794 kb on + strandat 310.794 kb on - strandat 310.798 kb on + strandat 310.802 kb on - strandat 310.807 kb on - strandat 310.815 kb on - strandat 310.903 kb on - strandat 310.917 kb on + strandat 310.970 kb on + strand, within TX73_001470at 310.988 kb on - strand, within TX73_001470at 311.021 kb on - strand, within TX73_001470at 311.036 kb on - strand, within TX73_001470at 311.054 kb on - strand, within TX73_001470at 311.123 kb on - strand, within TX73_001470at 311.127 kb on - strand, within TX73_001470at 311.164 kb on + strand, within TX73_001470at 311.167 kb on - strand, within TX73_001470at 311.167 kb on - strand, within TX73_001470at 311.167 kb on - strand, within TX73_001470at 311.172 kb on - strand, within TX73_001470at 311.186 kb on - strand, within TX73_001470at 311.233 kb on + strand, within TX73_001470at 311.233 kb on + strand, within TX73_001470at 311.233 kb on + strand, within TX73_001470at 311.233 kb on + strand, within TX73_001470at 311.233 kb on + strand, within TX73_001470at 311.236 kb on - strand, within TX73_001470at 311.241 kb on - strand, within TX73_001470at 311.241 kb on - strand, within TX73_001470at 311.241 kb on - strand, within TX73_001470at 311.292 kb on - strandat 311.305 kb on + strandat 312.057 kb on + strandat 312.058 kb on + strandat 312.058 kb on + strandat 312.061 kb on + strandat 312.063 kb on + strandat 312.064 kb on - strandat 312.065 kb on + strandat 312.087 kb on + strandat 312.087 kb on + strandat 312.087 kb on + strandat 312.095 kb on - strandat 312.132 kb on - strandat 312.132 kb on - strandat 312.134 kb on + strandat 312.140 kb on + strandat 312.140 kb on - strandat 312.140 kb on - strandat 312.159 kb on + strandat 312.167 kb on - strandat 312.175 kb on + strandat 312.175 kb on + strandat 312.190 kb on + strandat 312.208 kb on - strandat 312.210 kb on + strandat 312.210 kb on + strandat 312.284 kb on - strand, within TX73_001480at 312.285 kb on - strand, within TX73_001480at 312.285 kb on - strand, within TX73_001480at 312.298 kb on + strand, within TX73_001480at 312.303 kb on + strand, within TX73_001480

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Per-strain Table

Position Strand Gene LocusTag Fraction Thiamine HCl sulfur source
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309,901 + +0.2
309,929 - -0.2
309,929 - -0.1
309,945 + -0.3
309,987 + -0.0
309,988 + -1.2
310,013 - +0.5
310,027 + +0.1
310,027 - +0.6
310,042 - -0.2
310,050 - +0.2
310,092 - -0.4
310,173 + TX73_001465 0.19 -1.2
310,173 + TX73_001465 0.19 -0.1
310,255 + TX73_001465 0.29 -1.3
310,263 + TX73_001465 0.30 +0.4
310,291 + TX73_001465 0.34 -3.1
310,480 - TX73_001465 0.57 -0.3
310,520 - TX73_001465 0.62 -0.6
310,534 + TX73_001465 0.64 +0.1
310,542 - TX73_001465 0.65 -0.4
310,552 + TX73_001465 0.66 +0.6
310,554 + TX73_001465 0.66 -0.4
310,554 + TX73_001465 0.66 +0.0
310,556 + TX73_001465 0.66 +0.3
310,562 - TX73_001465 0.67 +0.1
310,562 - TX73_001465 0.67 +0.5
310,566 + TX73_001465 0.68 +0.4
310,624 + TX73_001465 0.75 +0.2
310,628 - TX73_001465 0.75 -0.1
310,635 + TX73_001465 0.76 +0.4
310,642 + TX73_001465 0.77 +0.2
310,642 + TX73_001465 0.77 -0.1
310,642 + TX73_001465 0.77 +0.6
310,647 + TX73_001465 0.78 -0.0
310,649 + TX73_001465 0.78 -0.1
310,650 - TX73_001465 0.78 +0.7
310,650 - TX73_001465 0.78 +0.5
310,650 - TX73_001465 0.78 +0.7
310,650 - TX73_001465 0.78 +0.5
310,650 - TX73_001465 0.78 -0.0
310,650 - TX73_001465 0.78 +0.7
310,650 - TX73_001465 0.78 -0.5
310,711 + TX73_001465 0.85 -1.0
310,719 - TX73_001465 0.86 +0.7
310,727 - TX73_001465 0.87 +0.1
310,730 + TX73_001465 0.88 -0.7
310,736 - TX73_001465 0.89 -0.4
310,740 - TX73_001465 0.89 -0.4
310,750 + -0.2
310,765 - +0.5
310,794 + -0.4
310,794 - -0.6
310,798 + +0.3
310,802 - -0.5
310,807 - +0.3
310,815 - -0.6
310,903 - +1.7
310,917 + +0.0
310,970 + TX73_001470 0.20 -2.2
310,988 - TX73_001470 0.24 -0.7
311,021 - TX73_001470 0.31 +1.3
311,036 - TX73_001470 0.35 -2.4
311,054 - TX73_001470 0.39 -2.7
311,123 - TX73_001470 0.54 -0.2
311,127 - TX73_001470 0.55 -0.7
311,164 + TX73_001470 0.63 +0.1
311,167 - TX73_001470 0.64 -0.4
311,167 - TX73_001470 0.64 +0.2
311,167 - TX73_001470 0.64 -0.2
311,172 - TX73_001470 0.65 -2.2
311,186 - TX73_001470 0.68 -0.6
311,233 + TX73_001470 0.78 -0.1
311,233 + TX73_001470 0.78 +0.3
311,233 + TX73_001470 0.78 -0.5
311,233 + TX73_001470 0.78 -1.1
311,233 + TX73_001470 0.78 -0.1
311,236 - TX73_001470 0.79 -0.7
311,241 - TX73_001470 0.80 +0.7
311,241 - TX73_001470 0.80 -1.9
311,241 - TX73_001470 0.80 +0.2
311,292 - +0.0
311,305 + -0.2
312,057 + -0.2
312,058 + +0.1
312,058 + -0.3
312,061 + -1.1
312,063 + +0.0
312,064 - -0.1
312,065 + +0.2
312,087 + -0.2
312,087 + +0.4
312,087 + +0.3
312,095 - +0.1
312,132 - -0.2
312,132 - +0.0
312,134 + -0.1
312,140 + +0.0
312,140 - +0.1
312,140 - +0.5
312,159 + +0.8
312,167 - +1.3
312,175 + -0.0
312,175 + -1.1
312,190 + -0.6
312,208 - -0.2
312,210 + -0.3
312,210 + +0.7
312,284 - TX73_001480 0.11 -0.8
312,285 - TX73_001480 0.12 -0.6
312,285 - TX73_001480 0.12 +0.8
312,298 + TX73_001480 0.14 -0.0
312,303 + TX73_001480 0.15 -0.2

Or see this region's nucleotide sequence