Experiment: Thiamine HCl sulfur source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_001025 and TX73_001030 are separated by 154 nucleotides TX73_001030 and TX73_001035 are separated by 59 nucleotides TX73_001035 and TX73_001040 are separated by 403 nucleotides
TX73_001025: TX73_001025 - Bax inhibitor-1/YccA family protein, at 222,285 to 223,076
_001025
TX73_001030: TX73_001030 - GNAT family N-acetyltransferase, at 223,231 to 223,761
_001030
TX73_001035: TX73_001035 - DUF2794 domain-containing protein, at 223,821 to 224,189
_001035
TX73_001040: TX73_001040 - DUF1223 domain-containing protein, at 224,593 to 225,348
_001040
Position (kb) 223
224
225 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 223.027 kb on + strand at 223.027 kb on + strand at 223.071 kb on + strand at 223.083 kb on + strand at 223.091 kb on - strand at 223.091 kb on - strand at 223.112 kb on + strand at 223.117 kb on + strand at 223.120 kb on - strand at 223.120 kb on - strand at 223.159 kb on - strand at 223.177 kb on + strand at 223.184 kb on + strand at 223.184 kb on + strand at 223.184 kb on + strand at 223.192 kb on - strand at 223.192 kb on - strand at 223.192 kb on - strand at 223.194 kb on - strand at 223.202 kb on + strand at 223.226 kb on - strand at 223.233 kb on + strand at 223.235 kb on + strand at 223.240 kb on + strand at 223.240 kb on + strand at 223.240 kb on + strand at 223.243 kb on - strand at 223.243 kb on - strand at 223.248 kb on - strand at 223.328 kb on + strand, within TX73_001030 at 223.336 kb on - strand, within TX73_001030 at 223.337 kb on + strand, within TX73_001030 at 223.345 kb on - strand, within TX73_001030 at 223.351 kb on - strand, within TX73_001030 at 223.375 kb on - strand, within TX73_001030 at 223.375 kb on - strand, within TX73_001030 at 223.385 kb on - strand, within TX73_001030 at 223.418 kb on - strand, within TX73_001030 at 223.436 kb on + strand, within TX73_001030 at 223.437 kb on - strand, within TX73_001030 at 223.439 kb on + strand, within TX73_001030 at 223.439 kb on + strand, within TX73_001030 at 223.442 kb on - strand, within TX73_001030 at 223.447 kb on - strand, within TX73_001030 at 223.472 kb on + strand, within TX73_001030 at 223.473 kb on - strand, within TX73_001030 at 223.496 kb on + strand, within TX73_001030 at 223.497 kb on + strand, within TX73_001030 at 223.503 kb on + strand, within TX73_001030 at 223.504 kb on - strand, within TX73_001030 at 223.537 kb on - strand, within TX73_001030 at 223.562 kb on + strand, within TX73_001030 at 223.574 kb on + strand, within TX73_001030 at 223.582 kb on - strand, within TX73_001030 at 223.635 kb on - strand, within TX73_001030 at 223.654 kb on - strand, within TX73_001030 at 223.654 kb on - strand, within TX73_001030 at 223.654 kb on - strand, within TX73_001030 at 223.654 kb on - strand, within TX73_001030 at 223.666 kb on + strand, within TX73_001030 at 223.696 kb on + strand, within TX73_001030 at 223.703 kb on + strand, within TX73_001030 at 223.704 kb on - strand, within TX73_001030 at 223.708 kb on + strand, within TX73_001030 at 223.711 kb on - strand at 223.711 kb on - strand at 223.716 kb on - strand at 223.728 kb on + strand at 223.736 kb on - strand at 223.758 kb on - strand at 223.806 kb on + strand at 223.810 kb on - strand at 223.819 kb on + strand at 223.819 kb on + strand at 223.819 kb on + strand at 223.819 kb on + strand at 223.819 kb on + strand at 223.826 kb on - strand at 223.827 kb on - strand at 223.827 kb on - strand at 223.827 kb on - strand at 223.832 kb on - strand at 223.837 kb on - strand at 223.868 kb on + strand, within TX73_001035 at 223.871 kb on - strand, within TX73_001035 at 223.881 kb on + strand, within TX73_001035 at 223.881 kb on + strand, within TX73_001035 at 223.887 kb on + strand, within TX73_001035 at 223.890 kb on - strand, within TX73_001035 at 223.910 kb on + strand, within TX73_001035 at 223.912 kb on + strand, within TX73_001035 at 223.912 kb on + strand, within TX73_001035 at 223.922 kb on - strand, within TX73_001035 at 223.926 kb on - strand, within TX73_001035 at 223.929 kb on - strand, within TX73_001035 at 223.944 kb on + strand, within TX73_001035 at 223.956 kb on + strand, within TX73_001035 at 223.962 kb on + strand, within TX73_001035 at 223.970 kb on - strand, within TX73_001035 at 223.990 kb on + strand, within TX73_001035 at 224.055 kb on + strand, within TX73_001035 at 224.055 kb on + strand, within TX73_001035 at 224.058 kb on - strand, within TX73_001035 at 224.063 kb on + strand, within TX73_001035 at 224.067 kb on + strand, within TX73_001035 at 224.087 kb on + strand, within TX73_001035 at 224.096 kb on + strand, within TX73_001035 at 224.096 kb on + strand, within TX73_001035 at 224.104 kb on - strand, within TX73_001035 at 224.104 kb on - strand, within TX73_001035 at 224.106 kb on + strand, within TX73_001035 at 224.110 kb on + strand, within TX73_001035 at 224.115 kb on + strand, within TX73_001035 at 224.120 kb on - strand, within TX73_001035 at 224.121 kb on - strand, within TX73_001035 at 224.123 kb on + strand, within TX73_001035 at 224.128 kb on + strand, within TX73_001035 at 224.136 kb on + strand, within TX73_001035 at 224.138 kb on + strand, within TX73_001035 at 224.141 kb on + strand, within TX73_001035 at 224.151 kb on + strand, within TX73_001035 at 224.198 kb on + strand at 224.209 kb on + strand at 224.215 kb on - strand at 224.215 kb on - strand at 224.216 kb on + strand at 224.216 kb on + strand at 224.235 kb on + strand at 224.263 kb on - strand at 224.297 kb on - strand at 224.298 kb on - strand at 224.298 kb on - strand at 224.337 kb on - strand at 224.365 kb on + strand at 224.371 kb on - strand at 224.373 kb on - strand at 224.375 kb on + strand at 224.375 kb on + strand at 224.375 kb on + strand at 224.375 kb on + strand at 224.375 kb on + strand at 224.381 kb on + strand at 224.383 kb on - strand at 224.390 kb on - strand at 224.395 kb on - strand at 224.410 kb on + strand at 224.410 kb on + strand at 224.410 kb on + strand at 224.410 kb on + strand at 224.413 kb on - strand at 224.418 kb on - strand at 224.428 kb on - strand at 224.430 kb on + strand at 224.435 kb on + strand at 224.438 kb on - strand at 224.442 kb on - strand at 224.442 kb on - strand at 224.448 kb on - strand at 224.449 kb on + strand at 224.450 kb on - strand at 224.464 kb on + strand at 224.466 kb on + strand at 224.466 kb on + strand at 224.466 kb on + strand at 224.474 kb on - strand at 224.474 kb on - strand at 224.531 kb on - strand at 224.531 kb on - strand at 224.531 kb on - strand at 224.538 kb on + strand at 224.538 kb on + strand at 224.538 kb on + strand at 224.538 kb on + strand at 224.538 kb on + strand at 224.538 kb on + strand at 224.543 kb on + strand at 224.543 kb on + strand at 224.545 kb on - strand at 224.546 kb on - strand at 224.546 kb on - strand at 224.551 kb on + strand at 224.551 kb on + strand at 224.551 kb on - strand at 224.551 kb on - strand at 224.551 kb on - strand at 224.556 kb on + strand at 224.559 kb on - strand at 224.582 kb on + strand at 224.597 kb on - strand at 224.613 kb on - strand at 224.615 kb on + strand at 224.615 kb on + strand at 224.623 kb on - strand at 224.623 kb on - strand at 224.644 kb on + strand at 224.650 kb on + strand at 224.658 kb on - strand at 224.680 kb on - strand, within TX73_001040 at 224.711 kb on + strand, within TX73_001040 at 224.711 kb on + strand, within TX73_001040 at 224.719 kb on - strand, within TX73_001040 at 224.719 kb on - strand, within TX73_001040 at 224.719 kb on - strand, within TX73_001040 at 224.719 kb on - strand, within TX73_001040 at 224.719 kb on - strand, within TX73_001040 at 224.719 kb on - strand, within TX73_001040 at 224.729 kb on - strand, within TX73_001040 at 224.734 kb on - strand, within TX73_001040 at 224.744 kb on + strand, within TX73_001040 at 224.746 kb on - strand, within TX73_001040 at 224.752 kb on - strand, within TX73_001040 at 224.752 kb on - strand, within TX73_001040 at 224.765 kb on + strand, within TX73_001040 at 224.772 kb on + strand, within TX73_001040 at 224.773 kb on - strand, within TX73_001040 at 224.773 kb on - strand, within TX73_001040 at 224.825 kb on + strand, within TX73_001040 at 224.825 kb on + strand, within TX73_001040 at 224.825 kb on + strand, within TX73_001040 at 224.825 kb on + strand, within TX73_001040 at 224.825 kb on + strand, within TX73_001040 at 224.833 kb on - strand, within TX73_001040 at 224.833 kb on - strand, within TX73_001040 at 224.833 kb on - strand, within TX73_001040 at 224.842 kb on + strand, within TX73_001040 at 224.842 kb on + strand, within TX73_001040 at 224.851 kb on - strand, within TX73_001040 at 224.867 kb on + strand, within TX73_001040 at 224.867 kb on + strand, within TX73_001040 at 224.867 kb on + strand, within TX73_001040 at 224.872 kb on + strand, within TX73_001040 at 224.880 kb on - strand, within TX73_001040 at 224.929 kb on + strand, within TX73_001040 at 224.929 kb on + strand, within TX73_001040 at 224.939 kb on + strand, within TX73_001040 at 224.939 kb on + strand, within TX73_001040 at 224.939 kb on + strand, within TX73_001040 at 224.939 kb on + strand, within TX73_001040 at 224.939 kb on + strand, within TX73_001040 at 224.939 kb on + strand, within TX73_001040 at 224.946 kb on - strand, within TX73_001040 at 224.946 kb on - strand, within TX73_001040 at 224.946 kb on - strand, within TX73_001040 at 224.947 kb on - strand, within TX73_001040 at 224.947 kb on - strand, within TX73_001040 at 224.947 kb on - strand, within TX73_001040 at 224.954 kb on + strand, within TX73_001040 at 224.974 kb on - strand, within TX73_001040 at 224.974 kb on - strand, within TX73_001040 at 224.988 kb on - strand, within TX73_001040 at 225.019 kb on + strand, within TX73_001040 at 225.026 kb on + strand, within TX73_001040 at 225.030 kb on - strand, within TX73_001040 at 225.031 kb on + strand, within TX73_001040 at 225.033 kb on + strand, within TX73_001040 at 225.033 kb on + strand, within TX73_001040 at 225.034 kb on - strand, within TX73_001040 at 225.041 kb on - strand, within TX73_001040 at 225.041 kb on - strand, within TX73_001040 at 225.041 kb on - strand, within TX73_001040 at 225.056 kb on - strand, within TX73_001040 at 225.070 kb on + strand, within TX73_001040 at 225.092 kb on + strand, within TX73_001040 at 225.140 kb on - strand, within TX73_001040 at 225.140 kb on - strand, within TX73_001040 at 225.153 kb on + strand, within TX73_001040 at 225.153 kb on + strand, within TX73_001040 at 225.153 kb on + strand, within TX73_001040 at 225.161 kb on - strand, within TX73_001040
Per-strain Table
Position Strand Gene LocusTag Fraction Thiamine HCl sulfur source remove 223,027 + +0.3 223,027 + +0.1 223,071 + -0.0 223,083 + -1.1 223,091 - -0.3 223,091 - -0.0 223,112 + -0.0 223,117 + +0.5 223,120 - -0.6 223,120 - -1.4 223,159 - +0.4 223,177 + +0.0 223,184 + +0.1 223,184 + -0.5 223,184 + +0.7 223,192 - -1.3 223,192 - +0.4 223,192 - -0.1 223,194 - -0.6 223,202 + +0.1 223,226 - -0.1 223,233 + -0.2 223,235 + -0.3 223,240 + -0.6 223,240 + +0.5 223,240 + +0.5 223,243 - -0.6 223,243 - -0.6 223,248 - -0.6 223,328 + TX73_001030 0.18 +0.5 223,336 - TX73_001030 0.20 -0.4 223,337 + TX73_001030 0.20 -0.1 223,345 - TX73_001030 0.21 -1.1 223,351 - TX73_001030 0.23 -0.7 223,375 - TX73_001030 0.27 +0.3 223,375 - TX73_001030 0.27 +0.5 223,385 - TX73_001030 0.29 +0.4 223,418 - TX73_001030 0.35 -0.8 223,436 + TX73_001030 0.39 -0.5 223,437 - TX73_001030 0.39 -0.2 223,439 + TX73_001030 0.39 -1.0 223,439 + TX73_001030 0.39 -0.3 223,442 - TX73_001030 0.40 +0.0 223,447 - TX73_001030 0.41 -0.3 223,472 + TX73_001030 0.45 -0.1 223,473 - TX73_001030 0.46 -0.3 223,496 + TX73_001030 0.50 -0.0 223,497 + TX73_001030 0.50 +0.0 223,503 + TX73_001030 0.51 +0.4 223,504 - TX73_001030 0.51 -0.4 223,537 - TX73_001030 0.58 -0.4 223,562 + TX73_001030 0.62 -0.3 223,574 + TX73_001030 0.65 +0.1 223,582 - TX73_001030 0.66 +1.5 223,635 - TX73_001030 0.76 -0.4 223,654 - TX73_001030 0.80 +0.2 223,654 - TX73_001030 0.80 +0.3 223,654 - TX73_001030 0.80 -1.2 223,654 - TX73_001030 0.80 -0.3 223,666 + TX73_001030 0.82 +0.3 223,696 + TX73_001030 0.88 +0.1 223,703 + TX73_001030 0.89 +0.0 223,704 - TX73_001030 0.89 +0.6 223,708 + TX73_001030 0.90 +0.6 223,711 - -2.0 223,711 - -0.0 223,716 - -0.5 223,728 + -0.1 223,736 - +0.2 223,758 - +0.1 223,806 + -0.4 223,810 - -1.6 223,819 + -0.2 223,819 + +0.2 223,819 + +0.7 223,819 + +0.1 223,819 + +0.6 223,826 - +0.5 223,827 - +0.2 223,827 - +0.1 223,827 - -1.0 223,832 - -0.5 223,837 - -0.5 223,868 + TX73_001035 0.13 -1.2 223,871 - TX73_001035 0.14 +0.3 223,881 + TX73_001035 0.16 -0.1 223,881 + TX73_001035 0.16 -0.8 223,887 + TX73_001035 0.18 -0.5 223,890 - TX73_001035 0.19 -0.1 223,910 + TX73_001035 0.24 -1.7 223,912 + TX73_001035 0.25 +0.2 223,912 + TX73_001035 0.25 +0.7 223,922 - TX73_001035 0.27 +0.6 223,926 - TX73_001035 0.28 -0.7 223,929 - TX73_001035 0.29 -0.3 223,944 + TX73_001035 0.33 -0.5 223,956 + TX73_001035 0.37 -0.0 223,962 + TX73_001035 0.38 -0.1 223,970 - TX73_001035 0.40 +0.5 223,990 + TX73_001035 0.46 -1.9 224,055 + TX73_001035 0.63 -0.7 224,055 + TX73_001035 0.63 -0.5 224,058 - TX73_001035 0.64 +0.1 224,063 + TX73_001035 0.66 -0.2 224,067 + TX73_001035 0.67 -0.1 224,087 + TX73_001035 0.72 -0.6 224,096 + TX73_001035 0.75 +0.9 224,096 + TX73_001035 0.75 -0.1 224,104 - TX73_001035 0.77 +0.3 224,104 - TX73_001035 0.77 -0.9 224,106 + TX73_001035 0.77 -0.1 224,110 + TX73_001035 0.78 +0.2 224,115 + TX73_001035 0.80 -2.5 224,120 - TX73_001035 0.81 -0.7 224,121 - TX73_001035 0.81 -0.7 224,123 + TX73_001035 0.82 -1.6 224,128 + TX73_001035 0.83 +0.3 224,136 + TX73_001035 0.85 +0.2 224,138 + TX73_001035 0.86 +0.8 224,141 + TX73_001035 0.87 -1.4 224,151 + TX73_001035 0.89 +0.3 224,198 + -1.0 224,209 + +0.2 224,215 - -0.8 224,215 - +0.6 224,216 + -1.1 224,216 + -0.4 224,235 + -0.1 224,263 - -0.6 224,297 - -0.5 224,298 - +0.2 224,298 - -0.0 224,337 - -1.6 224,365 + -0.2 224,371 - -0.3 224,373 - -0.2 224,375 + +0.0 224,375 + -0.7 224,375 + +0.2 224,375 + -0.4 224,375 + -0.5 224,381 + -0.6 224,383 - +0.4 224,390 - -1.1 224,395 - +0.4 224,410 + -0.3 224,410 + -0.8 224,410 + +0.1 224,410 + -1.7 224,413 - +0.3 224,418 - -0.5 224,428 - -1.1 224,430 + -1.0 224,435 + -0.4 224,438 - +0.9 224,442 - -0.4 224,442 - -0.1 224,448 - +0.0 224,449 + +0.3 224,450 - +0.2 224,464 + -2.2 224,466 + -0.5 224,466 + -2.4 224,466 + -0.6 224,474 - +0.0 224,474 - -0.1 224,531 - +0.1 224,531 - -0.6 224,531 - +0.0 224,538 + -0.5 224,538 + -0.4 224,538 + -0.8 224,538 + -1.4 224,538 + +0.7 224,538 + +0.1 224,543 + -0.8 224,543 + -0.0 224,545 - +1.1 224,546 - -0.4 224,546 - -0.0 224,551 + -0.6 224,551 + +0.8 224,551 - -0.5 224,551 - -0.8 224,551 - -0.5 224,556 + -0.3 224,559 - +0.2 224,582 + -0.5 224,597 - -0.9 224,613 - -0.2 224,615 + -0.4 224,615 + -1.4 224,623 - -3.6 224,623 - +0.6 224,644 + +0.5 224,650 + -0.3 224,658 - -0.9 224,680 - TX73_001040 0.12 +0.6 224,711 + TX73_001040 0.16 -1.7 224,711 + TX73_001040 0.16 -0.2 224,719 - TX73_001040 0.17 -0.5 224,719 - TX73_001040 0.17 -0.5 224,719 - TX73_001040 0.17 -1.7 224,719 - TX73_001040 0.17 -0.5 224,719 - TX73_001040 0.17 +0.1 224,719 - TX73_001040 0.17 -1.0 224,729 - TX73_001040 0.18 -0.7 224,734 - TX73_001040 0.19 +0.4 224,744 + TX73_001040 0.20 -0.2 224,746 - TX73_001040 0.20 -0.3 224,752 - TX73_001040 0.21 -0.2 224,752 - TX73_001040 0.21 +0.5 224,765 + TX73_001040 0.23 +0.4 224,772 + TX73_001040 0.24 +0.3 224,773 - TX73_001040 0.24 -0.2 224,773 - TX73_001040 0.24 -0.1 224,825 + TX73_001040 0.31 -0.5 224,825 + TX73_001040 0.31 +1.9 224,825 + TX73_001040 0.31 -0.3 224,825 + TX73_001040 0.31 +1.0 224,825 + TX73_001040 0.31 +0.0 224,833 - TX73_001040 0.32 -0.2 224,833 - TX73_001040 0.32 -0.4 224,833 - TX73_001040 0.32 -1.5 224,842 + TX73_001040 0.33 -0.5 224,842 + TX73_001040 0.33 -0.1 224,851 - TX73_001040 0.34 +0.4 224,867 + TX73_001040 0.36 -1.6 224,867 + TX73_001040 0.36 -0.1 224,867 + TX73_001040 0.36 -0.3 224,872 + TX73_001040 0.37 -0.4 224,880 - TX73_001040 0.38 -0.5 224,929 + TX73_001040 0.44 +0.8 224,929 + TX73_001040 0.44 -1.1 224,939 + TX73_001040 0.46 -0.6 224,939 + TX73_001040 0.46 +1.3 224,939 + TX73_001040 0.46 +1.5 224,939 + TX73_001040 0.46 +0.1 224,939 + TX73_001040 0.46 -0.6 224,939 + TX73_001040 0.46 +0.9 224,946 - TX73_001040 0.47 -0.7 224,946 - TX73_001040 0.47 -0.5 224,946 - TX73_001040 0.47 -1.3 224,947 - TX73_001040 0.47 -0.9 224,947 - TX73_001040 0.47 -0.2 224,947 - TX73_001040 0.47 -0.8 224,954 + TX73_001040 0.48 -0.7 224,974 - TX73_001040 0.50 +1.3 224,974 - TX73_001040 0.50 +0.3 224,988 - TX73_001040 0.52 -0.4 225,019 + TX73_001040 0.56 -0.2 225,026 + TX73_001040 0.57 +0.0 225,030 - TX73_001040 0.58 -0.9 225,031 + TX73_001040 0.58 -0.7 225,033 + TX73_001040 0.58 -1.2 225,033 + TX73_001040 0.58 -1.7 225,034 - TX73_001040 0.58 +0.7 225,041 - TX73_001040 0.59 -1.1 225,041 - TX73_001040 0.59 -0.1 225,041 - TX73_001040 0.59 -0.2 225,056 - TX73_001040 0.61 +0.1 225,070 + TX73_001040 0.63 -0.2 225,092 + TX73_001040 0.66 -1.2 225,140 - TX73_001040 0.72 -0.4 225,140 - TX73_001040 0.72 -0.4 225,153 + TX73_001040 0.74 -1.2 225,153 + TX73_001040 0.74 -0.3 225,153 + TX73_001040 0.74 -1.3 225,161 - TX73_001040 0.75 +0.2
Or see this region's nucleotide sequence