Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_021000

Experiment: Thiamine HCl sulfur source

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Thiamine HCl sulfur source
4,583,816	-		TX73_020995	0.12	-0.6
4,583,883	+		TX73_020995	0.18	-0.6
4,583,926	-		TX73_020995	0.22	+0.2
4,583,936	-		TX73_020995	0.23	-0.4
4,583,972	-		TX73_020995	0.26	+0.6
4,583,972	-		TX73_020995	0.26	-0.6
4,584,002	+		TX73_020995	0.29	-0.2
4,584,010	-		TX73_020995	0.30	-1.2
4,584,010	-		TX73_020995	0.30	-0.6
4,584,024	+		TX73_020995	0.31	-0.1
4,584,024	+		TX73_020995	0.31	+0.2
4,584,027	-		TX73_020995	0.31	-0.1
4,584,032	+		TX73_020995	0.32	-0.6
4,584,112	+		TX73_020995	0.39	-0.5
4,584,145	-		TX73_020995	0.42	-0.4
4,584,182	+		TX73_020995	0.45	+0.1
4,584,365	-		TX73_020995	0.61	+2.6
4,584,365	-		TX73_020995	0.61	-0.1
4,584,365	-		TX73_020995	0.61	-1.2
4,584,367	-		TX73_020995	0.61	-0.5
4,584,376	+		TX73_020995	0.62	+0.0
4,584,376	+		TX73_020995	0.62	+0.7
4,584,376	+		TX73_020995	0.62	-0.9
4,584,376	+		TX73_020995	0.62	+0.4
4,584,376	+		TX73_020995	0.62	+0.6
4,584,384	-		TX73_020995	0.63	+0.3
4,584,440	+		TX73_020995	0.68	-1.3
4,584,448	-		TX73_020995	0.69	+0.8
4,584,478	-		TX73_020995	0.71	-0.3
4,584,500	+		TX73_020995	0.73	+0.2
4,584,501	+		TX73_020995	0.73	+0.0
4,584,508	-		TX73_020995	0.74	-1.4
4,584,538	+		TX73_020995	0.77	+0.7
4,584,566	-		TX73_020995	0.79	-0.0
4,584,577	-		TX73_020995	0.80	-0.5
4,584,585	+		TX73_020995	0.81	-1.0
4,584,608	+		TX73_020995	0.83	-0.6
4,584,648	-		TX73_020995	0.87	-1.9
4,584,662	-		TX73_020995	0.88	-0.0
4,584,755	+				+0.4
4,584,760	+				+0.1
4,584,806	+				-0.4
4,584,806	+				-1.1
4,584,809	+				+1.1
4,584,813	-				+0.5
4,584,822	+				-1.8
4,584,822	+				-3.1
4,584,825	-				-0.0
4,584,825	-				-0.8
4,584,835	-				+0.7
4,584,842	+				-0.2
4,584,850	-				-1.1
4,584,857	-				+0.2
4,584,892	+				-1.4
4,584,892	+				-0.5
4,584,892	+				-2.1
4,584,892	+				-1.2
4,584,900	-				+0.0
4,584,900	-				-0.0
4,584,900	-				-1.7
4,584,900	-				-0.7
4,584,910	+		TX73_021000	0.11	+1.4
4,584,937	-		TX73_021000	0.13	-1.1
4,584,956	+		TX73_021000	0.15	-1.5
4,584,966	+		TX73_021000	0.16	-1.4
4,584,969	-		TX73_021000	0.16	+0.4
4,584,971	-		TX73_021000	0.16	-0.7
4,585,002	+		TX73_021000	0.19	-1.6
4,585,025	-		TX73_021000	0.21	-2.5
4,585,033	+		TX73_021000	0.22	-2.6
4,585,033	+		TX73_021000	0.22	-1.5
4,585,033	+		TX73_021000	0.22	+0.7
4,585,033	+		TX73_021000	0.22	-2.3
4,585,036	-		TX73_021000	0.22	-2.1
4,585,054	-		TX73_021000	0.24	-1.2
4,585,105	+		TX73_021000	0.29	-2.4
4,585,113	-		TX73_021000	0.30	+0.2
4,585,113	-		TX73_021000	0.30	-3.2
4,585,113	-		TX73_021000	0.30	-0.5
4,585,137	-		TX73_021000	0.32	-0.5
4,585,166	-		TX73_021000	0.34	-2.1
4,585,199	+		TX73_021000	0.38	-1.4
4,585,201	+		TX73_021000	0.38	-3.6
4,585,204	-		TX73_021000	0.38	+0.2
4,585,209	+		TX73_021000	0.38	+0.2
4,585,224	+		TX73_021000	0.40	-1.2
4,585,254	+		TX73_021000	0.43	-2.5
4,585,266	+		TX73_021000	0.44	-1.5
4,585,266	-		TX73_021000	0.44	-1.5
4,585,274	-		TX73_021000	0.44	-2.1
4,585,274	-		TX73_021000	0.44	-3.3
4,585,274	-		TX73_021000	0.44	-0.8
4,585,291	+		TX73_021000	0.46	+0.4
4,585,294	-		TX73_021000	0.46	-0.8
4,585,300	-		TX73_021000	0.47	-1.2
4,585,336	+		TX73_021000	0.50	-1.4
4,585,341	+		TX73_021000	0.51	-1.1
4,585,341	+		TX73_021000	0.51	-1.4
4,585,341	+		TX73_021000	0.51	-3.0
4,585,350	-		TX73_021000	0.51	-2.8
4,585,414	+		TX73_021000	0.57	-2.5
4,585,438	-		TX73_021000	0.60	-1.2
4,585,451	-		TX73_021000	0.61	-1.2
4,585,535	+		TX73_021000	0.69	-3.3
4,585,540	+		TX73_021000	0.69	-0.4
4,585,541	+		TX73_021000	0.69	-2.7
4,585,578	-		TX73_021000	0.73	-1.3
4,585,587	-		TX73_021000	0.73	-2.1
4,585,588	-		TX73_021000	0.74	-0.6
4,585,599	+		TX73_021000	0.75	-1.5
4,585,600	+		TX73_021000	0.75	-2.8
4,585,608	-		TX73_021000	0.75	-3.1
4,585,639	-		TX73_021000	0.78	-2.4
4,585,639	-		TX73_021000	0.78	-2.4
4,585,665	+		TX73_021000	0.81	-2.5
4,585,694	-		TX73_021000	0.83	-1.3
4,585,699	-		TX73_021000	0.84	-0.4
4,585,788	+				-1.4
4,585,796	-				-1.4
4,585,796	-				-3.1
4,585,812	+				-0.4
4,585,816	-				-0.2
4,585,838	+				-1.6
4,585,839	-				+0.2
4,585,850	+				-0.6
4,585,855	+				+0.1
4,585,858	-				-0.9
4,585,858	-				+1.2
4,585,899	-				-1.0
4,585,940	+				-0.2
4,585,963	-				+0.3
4,585,991	-				-0.3
4,586,003	-				-2.2
4,586,010	+				+1.3
4,586,010	+				-0.9
4,586,049	-		TX73_021005	0.10	-0.3
4,586,067	-		TX73_021005	0.11	-3.0
4,586,077	-		TX73_021005	0.12	-0.9
4,586,080	+		TX73_021005	0.12	-1.3
4,586,080	+		TX73_021005	0.12	-0.7
4,586,086	-		TX73_021005	0.12	-1.1
4,586,098	-		TX73_021005	0.13	-0.2
4,586,129	+		TX73_021005	0.15	-0.9
4,586,151	-		TX73_021005	0.16	+1.2
4,586,151	-		TX73_021005	0.16	+0.2
4,586,165	+		TX73_021005	0.17	-0.7
4,586,165	+		TX73_021005	0.17	-0.4
4,586,173	-		TX73_021005	0.17	-1.0
4,586,184	+		TX73_021005	0.18	-0.0
4,586,184	-		TX73_021005	0.18	-0.7
4,586,189	+		TX73_021005	0.18	+0.3
4,586,199	-		TX73_021005	0.18	+2.2
4,586,237	+		TX73_021005	0.21	+0.0
4,586,285	+		TX73_021005	0.23	-1.2
4,586,339	-		TX73_021005	0.26	-0.4
4,586,340	-		TX73_021005	0.26	-0.5
4,586,354	-		TX73_021005	0.27	-0.1
4,586,356	+		TX73_021005	0.27	-0.9
4,586,364	+		TX73_021005	0.28	-0.4
4,586,376	-		TX73_021005	0.28	-2.9
4,586,389	+		TX73_021005	0.29	-0.6
4,586,389	+		TX73_021005	0.29	-1.4
4,586,394	+		TX73_021005	0.29	-1.2
4,586,397	-		TX73_021005	0.29	+0.2
4,586,413	+		TX73_021005	0.30	-0.6
4,586,428	+		TX73_021005	0.31	-1.2
4,586,431	+		TX73_021005	0.31	-0.4
4,586,532	+		TX73_021005	0.37	+0.4
4,586,532	+		TX73_021005	0.37	-2.0
4,586,549	+		TX73_021005	0.38	-1.8
4,586,556	-		TX73_021005	0.38	+0.1
4,586,561	+		TX73_021005	0.38	-0.5
4,586,595	-		TX73_021005	0.40	-1.3
4,586,603	-		TX73_021005	0.41	-0.2
4,586,610	-		TX73_021005	0.41	-1.9
4,586,653	+		TX73_021005	0.44	-1.4
4,586,654	+		TX73_021005	0.44	-2.1
4,586,661	-		TX73_021005	0.44	-0.7
4,586,661	-		TX73_021005	0.44	-0.9
4,586,699	-		TX73_021005	0.46	-1.1
4,586,715	-		TX73_021005	0.47	-1.3
4,586,722	-		TX73_021005	0.47	-1.2
4,586,723	-		TX73_021005	0.47	-1.4
4,586,723	-		TX73_021005	0.47	-0.4
4,586,725	-		TX73_021005	0.48	-0.7
4,586,779	+		TX73_021005	0.51	-0.8
4,586,791	+		TX73_021005	0.51	-0.4
4,586,793	+		TX73_021005	0.51	+0.4
4,586,794	-		TX73_021005	0.51	-0.4
4,586,794	-		TX73_021005	0.51	+0.6
4,586,806	+		TX73_021005	0.52	-1.0
4,586,819	-		TX73_021005	0.53	-1.5
4,586,836	-		TX73_021005	0.54	-1.7
4,586,837	+		TX73_021005	0.54	-0.3
4,586,842	+		TX73_021005	0.54	+0.5
4,586,847	+		TX73_021005	0.54	-2.2
4,586,850	-		TX73_021005	0.54	-0.6
4,586,851	+		TX73_021005	0.55	-0.9
4,586,855	-		TX73_021005	0.55	-2.4
4,586,859	-		TX73_021005	0.55	-0.3
4,586,859	-		TX73_021005	0.55	-0.8
4,586,871	+		TX73_021005	0.56	-0.5