Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_000770

Experiment: sodium isethionate sulfur source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_000760 and TX73_000765 are separated by 23 nucleotidesTX73_000765 and TX73_000770 overlap by 4 nucleotidesTX73_000770 and TX73_000775 are separated by 1 nucleotides TX73_000760: TX73_000760 - DUF2478 domain-containing protein, at 166,873 to 167,409 _000760 TX73_000765: TX73_000765 - ABC transporter ATP-binding protein, at 167,433 to 168,227 _000765 TX73_000770: TX73_000770 - iron ABC transporter permease, at 168,224 to 169,246 _000770 TX73_000775: TX73_000775 - iron ABC transporter substrate-binding protein, at 169,248 to 170,297 _000775 Position (kb) 168 169 170Strain fitness (log2 ratio) -1 0 1 2 3at 167.240 kb on - strand, within TX73_000760at 167.276 kb on + strand, within TX73_000760at 167.276 kb on + strand, within TX73_000760at 167.277 kb on + strand, within TX73_000760at 167.285 kb on - strand, within TX73_000760at 167.285 kb on - strand, within TX73_000760at 167.294 kb on + strand, within TX73_000760at 167.345 kb on + strand, within TX73_000760at 167.353 kb on - strand, within TX73_000760at 167.353 kb on - strand, within TX73_000760at 167.354 kb on + strand, within TX73_000760at 167.380 kb on + strandat 167.430 kb on + strandat 167.430 kb on + strandat 167.456 kb on + strandat 167.501 kb on - strandat 167.501 kb on - strandat 167.507 kb on + strandat 167.507 kb on + strandat 167.547 kb on - strand, within TX73_000765at 167.561 kb on + strand, within TX73_000765at 167.561 kb on + strand, within TX73_000765at 167.647 kb on + strand, within TX73_000765at 167.682 kb on - strand, within TX73_000765at 167.712 kb on + strand, within TX73_000765at 167.719 kb on - strand, within TX73_000765at 167.719 kb on - strand, within TX73_000765at 167.737 kb on - strand, within TX73_000765at 167.745 kb on - strand, within TX73_000765at 167.754 kb on + strand, within TX73_000765at 167.755 kb on - strand, within TX73_000765at 167.759 kb on + strand, within TX73_000765at 167.759 kb on + strand, within TX73_000765at 167.798 kb on + strand, within TX73_000765at 167.808 kb on - strand, within TX73_000765at 167.849 kb on + strand, within TX73_000765at 167.868 kb on - strand, within TX73_000765at 167.886 kb on + strand, within TX73_000765at 167.917 kb on + strand, within TX73_000765at 167.962 kb on + strand, within TX73_000765at 167.970 kb on - strand, within TX73_000765at 167.988 kb on + strand, within TX73_000765at 167.989 kb on - strand, within TX73_000765at 168.005 kb on + strand, within TX73_000765at 168.008 kb on - strand, within TX73_000765at 168.010 kb on + strand, within TX73_000765at 168.037 kb on - strand, within TX73_000765at 168.037 kb on - strand, within TX73_000765at 168.048 kb on - strand, within TX73_000765at 168.059 kb on + strand, within TX73_000765at 168.060 kb on + strand, within TX73_000765at 168.068 kb on - strand, within TX73_000765at 168.068 kb on - strand, within TX73_000765at 168.072 kb on + strand, within TX73_000765at 168.072 kb on + strand, within TX73_000765at 168.072 kb on + strand, within TX73_000765at 168.078 kb on - strand, within TX73_000765at 168.080 kb on - strand, within TX73_000765at 168.080 kb on - strand, within TX73_000765at 168.080 kb on - strand, within TX73_000765at 168.080 kb on - strand, within TX73_000765at 168.080 kb on - strand, within TX73_000765at 168.082 kb on + strand, within TX73_000765at 168.082 kb on + strand, within TX73_000765at 168.082 kb on + strand, within TX73_000765at 168.090 kb on - strand, within TX73_000765at 168.090 kb on - strand, within TX73_000765at 168.117 kb on - strand, within TX73_000765at 168.120 kb on + strand, within TX73_000765at 168.156 kb on + strandat 168.182 kb on + strandat 168.208 kb on + strandat 168.293 kb on - strandat 168.296 kb on - strandat 168.347 kb on + strand, within TX73_000770at 168.353 kb on + strand, within TX73_000770at 168.360 kb on + strand, within TX73_000770at 168.362 kb on + strand, within TX73_000770at 168.362 kb on + strand, within TX73_000770at 168.370 kb on - strand, within TX73_000770at 168.370 kb on - strand, within TX73_000770at 168.377 kb on + strand, within TX73_000770at 168.377 kb on + strand, within TX73_000770at 168.404 kb on + strand, within TX73_000770at 168.414 kb on + strand, within TX73_000770at 168.420 kb on + strand, within TX73_000770at 168.428 kb on - strand, within TX73_000770at 168.445 kb on + strand, within TX73_000770at 168.445 kb on + strand, within TX73_000770at 168.451 kb on + strand, within TX73_000770at 168.453 kb on - strand, within TX73_000770at 168.454 kb on - strand, within TX73_000770at 168.476 kb on - strand, within TX73_000770at 168.497 kb on + strand, within TX73_000770at 168.534 kb on - strand, within TX73_000770at 168.534 kb on - strand, within TX73_000770at 168.541 kb on + strand, within TX73_000770at 168.541 kb on + strand, within TX73_000770at 168.549 kb on - strand, within TX73_000770at 168.581 kb on - strand, within TX73_000770at 168.586 kb on - strand, within TX73_000770at 168.634 kb on - strand, within TX73_000770at 168.671 kb on - strand, within TX73_000770at 168.671 kb on - strand, within TX73_000770at 168.699 kb on - strand, within TX73_000770at 168.780 kb on + strand, within TX73_000770at 168.780 kb on + strand, within TX73_000770at 168.781 kb on - strand, within TX73_000770at 168.797 kb on + strand, within TX73_000770at 168.798 kb on - strand, within TX73_000770at 168.802 kb on + strand, within TX73_000770at 168.807 kb on + strand, within TX73_000770at 168.829 kb on + strand, within TX73_000770at 168.833 kb on - strand, within TX73_000770at 168.847 kb on + strand, within TX73_000770at 168.881 kb on + strand, within TX73_000770at 168.883 kb on - strand, within TX73_000770at 168.883 kb on - strand, within TX73_000770at 168.887 kb on + strand, within TX73_000770at 168.927 kb on + strand, within TX73_000770at 168.969 kb on - strand, within TX73_000770at 168.969 kb on - strand, within TX73_000770at 168.970 kb on - strand, within TX73_000770at 168.989 kb on - strand, within TX73_000770at 169.057 kb on - strand, within TX73_000770at 169.102 kb on + strand, within TX73_000770at 169.110 kb on - strand, within TX73_000770at 169.120 kb on - strand, within TX73_000770at 169.142 kb on + strand, within TX73_000770at 169.152 kb on + strandat 169.162 kb on + strandat 169.171 kb on + strandat 169.210 kb on + strandat 169.218 kb on - strandat 169.218 kb on - strandat 169.222 kb on - strandat 169.237 kb on + strandat 169.239 kb on + strandat 169.261 kb on + strandat 169.274 kb on + strandat 169.329 kb on - strandat 169.348 kb on + strandat 169.366 kb on - strand, within TX73_000775at 169.394 kb on - strand, within TX73_000775at 169.395 kb on + strand, within TX73_000775at 169.399 kb on + strand, within TX73_000775at 169.475 kb on - strand, within TX73_000775at 169.475 kb on - strand, within TX73_000775at 169.495 kb on - strand, within TX73_000775at 169.506 kb on - strand, within TX73_000775at 169.517 kb on - strand, within TX73_000775at 169.518 kb on + strand, within TX73_000775at 169.522 kb on - strand, within TX73_000775at 169.553 kb on + strand, within TX73_000775at 169.625 kb on + strand, within TX73_000775at 169.638 kb on - strand, within TX73_000775at 169.662 kb on - strand, within TX73_000775at 169.668 kb on + strand, within TX73_000775at 169.678 kb on + strand, within TX73_000775at 169.790 kb on + strand, within TX73_000775at 169.793 kb on - strand, within TX73_000775at 169.811 kb on + strand, within TX73_000775at 169.811 kb on + strand, within TX73_000775at 169.811 kb on + strand, within TX73_000775at 169.811 kb on + strand, within TX73_000775at 169.811 kb on + strand, within TX73_000775at 169.811 kb on + strand, within TX73_000775at 169.811 kb on + strand, within TX73_000775at 169.813 kb on + strand, within TX73_000775at 169.813 kb on + strand, within TX73_000775at 169.819 kb on - strand, within TX73_000775at 169.819 kb on - strand, within TX73_000775at 169.819 kb on - strand, within TX73_000775at 169.819 kb on - strand, within TX73_000775at 169.819 kb on - strand, within TX73_000775at 169.819 kb on - strand, within TX73_000775at 169.819 kb on - strand, within TX73_000775at 169.819 kb on - strand, within TX73_000775at 169.819 kb on - strand, within TX73_000775at 169.819 kb on - strand, within TX73_000775at 169.838 kb on - strand, within TX73_000775at 169.872 kb on - strand, within TX73_000775at 169.893 kb on - strand, within TX73_000775at 169.893 kb on - strand, within TX73_000775at 169.919 kb on + strand, within TX73_000775at 169.919 kb on + strand, within TX73_000775at 169.958 kb on + strand, within TX73_000775at 169.958 kb on + strand, within TX73_000775at 169.958 kb on + strand, within TX73_000775at 169.987 kb on + strand, within TX73_000775at 169.987 kb on + strand, within TX73_000775at 169.987 kb on + strand, within TX73_000775at 169.995 kb on - strand, within TX73_000775at 169.995 kb on - strand, within TX73_000775at 170.019 kb on + strand, within TX73_000775at 170.035 kb on - strand, within TX73_000775at 170.035 kb on - strand, within TX73_000775at 170.042 kb on + strand, within TX73_000775at 170.042 kb on + strand, within TX73_000775at 170.050 kb on - strand, within TX73_000775at 170.050 kb on - strand, within TX73_000775at 170.060 kb on - strand, within TX73_000775at 170.093 kb on - strand, within TX73_000775at 170.093 kb on - strand, within TX73_000775at 170.119 kb on - strand, within TX73_000775at 170.172 kb on - strand, within TX73_000775at 170.189 kb on + strand, within TX73_000775at 170.197 kb on + strandat 170.197 kb on - strandat 170.207 kb on - strandat 170.209 kb on + strandat 170.209 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium isethionate sulfur source
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167,240 - TX73_000760 0.68 +0.1
167,276 + TX73_000760 0.75 -0.7
167,276 + TX73_000760 0.75 -0.1
167,277 + TX73_000760 0.75 +0.3
167,285 - TX73_000760 0.77 +0.1
167,285 - TX73_000760 0.77 +0.2
167,294 + TX73_000760 0.78 +0.6
167,345 + TX73_000760 0.88 +0.2
167,353 - TX73_000760 0.89 -0.0
167,353 - TX73_000760 0.89 -0.3
167,354 + TX73_000760 0.90 +0.9
167,380 + -0.1
167,430 + +0.9
167,430 + -0.2
167,456 + +0.4
167,501 - +0.3
167,501 - +0.8
167,507 + +0.1
167,507 + +0.6
167,547 - TX73_000765 0.14 +0.6
167,561 + TX73_000765 0.16 +0.3
167,561 + TX73_000765 0.16 -0.0
167,647 + TX73_000765 0.27 -0.7
167,682 - TX73_000765 0.31 -0.1
167,712 + TX73_000765 0.35 +0.6
167,719 - TX73_000765 0.36 +0.4
167,719 - TX73_000765 0.36 -0.9
167,737 - TX73_000765 0.38 +0.2
167,745 - TX73_000765 0.39 -1.7
167,754 + TX73_000765 0.40 +0.2
167,755 - TX73_000765 0.41 +0.7
167,759 + TX73_000765 0.41 +0.3
167,759 + TX73_000765 0.41 +0.3
167,798 + TX73_000765 0.46 -0.2
167,808 - TX73_000765 0.47 -0.4
167,849 + TX73_000765 0.52 -0.8
167,868 - TX73_000765 0.55 -0.6
167,886 + TX73_000765 0.57 -0.4
167,917 + TX73_000765 0.61 -0.5
167,962 + TX73_000765 0.67 -0.0
167,970 - TX73_000765 0.68 +0.3
167,988 + TX73_000765 0.70 -1.2
167,989 - TX73_000765 0.70 +0.8
168,005 + TX73_000765 0.72 +0.6
168,008 - TX73_000765 0.72 +0.6
168,010 + TX73_000765 0.73 +0.4
168,037 - TX73_000765 0.76 +0.3
168,037 - TX73_000765 0.76 -0.0
168,048 - TX73_000765 0.77 +0.7
168,059 + TX73_000765 0.79 -0.0
168,060 + TX73_000765 0.79 +0.2
168,068 - TX73_000765 0.80 -0.7
168,068 - TX73_000765 0.80 -0.6
168,072 + TX73_000765 0.80 -0.4
168,072 + TX73_000765 0.80 +0.3
168,072 + TX73_000765 0.80 +0.0
168,078 - TX73_000765 0.81 -0.5
168,080 - TX73_000765 0.81 +0.8
168,080 - TX73_000765 0.81 +0.2
168,080 - TX73_000765 0.81 +0.4
168,080 - TX73_000765 0.81 +0.3
168,080 - TX73_000765 0.81 +0.0
168,082 + TX73_000765 0.82 -0.2
168,082 + TX73_000765 0.82 +0.3
168,082 + TX73_000765 0.82 +0.2
168,090 - TX73_000765 0.83 +0.1
168,090 - TX73_000765 0.83 +0.1
168,117 - TX73_000765 0.86 -0.2
168,120 + TX73_000765 0.86 -0.3
168,156 + +0.3
168,182 + +1.0
168,208 + -0.1
168,293 - +0.6
168,296 - -0.1
168,347 + TX73_000770 0.12 +0.6
168,353 + TX73_000770 0.13 -0.1
168,360 + TX73_000770 0.13 +0.1
168,362 + TX73_000770 0.13 +0.2
168,362 + TX73_000770 0.13 -0.2
168,370 - TX73_000770 0.14 +0.3
168,370 - TX73_000770 0.14 -0.2
168,377 + TX73_000770 0.15 -1.6
168,377 + TX73_000770 0.15 +0.0
168,404 + TX73_000770 0.18 +0.4
168,414 + TX73_000770 0.19 +0.3
168,420 + TX73_000770 0.19 -0.1
168,428 - TX73_000770 0.20 +0.9
168,445 + TX73_000770 0.22 -0.4
168,445 + TX73_000770 0.22 +0.1
168,451 + TX73_000770 0.22 +0.7
168,453 - TX73_000770 0.22 +0.4
168,454 - TX73_000770 0.22 +0.5
168,476 - TX73_000770 0.25 -0.6
168,497 + TX73_000770 0.27 +0.6
168,534 - TX73_000770 0.30 +0.6
168,534 - TX73_000770 0.30 +1.1
168,541 + TX73_000770 0.31 -0.3
168,541 + TX73_000770 0.31 +0.2
168,549 - TX73_000770 0.32 -0.5
168,581 - TX73_000770 0.35 +0.0
168,586 - TX73_000770 0.35 +0.3
168,634 - TX73_000770 0.40 -0.5
168,671 - TX73_000770 0.44 +0.3
168,671 - TX73_000770 0.44 -0.5
168,699 - TX73_000770 0.46 -0.2
168,780 + TX73_000770 0.54 -0.4
168,780 + TX73_000770 0.54 -0.2
168,781 - TX73_000770 0.54 +0.4
168,797 + TX73_000770 0.56 +0.1
168,798 - TX73_000770 0.56 +0.2
168,802 + TX73_000770 0.57 -1.4
168,807 + TX73_000770 0.57 +0.3
168,829 + TX73_000770 0.59 -0.0
168,833 - TX73_000770 0.60 +1.1
168,847 + TX73_000770 0.61 -0.4
168,881 + TX73_000770 0.64 -0.2
168,883 - TX73_000770 0.64 -0.3
168,883 - TX73_000770 0.64 -0.5
168,887 + TX73_000770 0.65 -0.8
168,927 + TX73_000770 0.69 +2.9
168,969 - TX73_000770 0.73 +0.6
168,969 - TX73_000770 0.73 -0.0
168,970 - TX73_000770 0.73 -0.3
168,989 - TX73_000770 0.75 -0.0
169,057 - TX73_000770 0.81 +0.2
169,102 + TX73_000770 0.86 +0.9
169,110 - TX73_000770 0.87 +0.1
169,120 - TX73_000770 0.88 +0.6
169,142 + TX73_000770 0.90 +0.7
169,152 + -0.6
169,162 + +0.9
169,171 + -0.1
169,210 + +0.8
169,218 - -0.0
169,218 - +0.8
169,222 - +0.3
169,237 + -0.7
169,239 + -0.4
169,261 + +0.1
169,274 + +0.1
169,329 - -0.5
169,348 + -0.7
169,366 - TX73_000775 0.11 -0.9
169,394 - TX73_000775 0.14 -0.1
169,395 + TX73_000775 0.14 -0.3
169,399 + TX73_000775 0.14 +0.8
169,475 - TX73_000775 0.22 +0.5
169,475 - TX73_000775 0.22 +0.3
169,495 - TX73_000775 0.24 +0.0
169,506 - TX73_000775 0.25 +0.1
169,517 - TX73_000775 0.26 -0.3
169,518 + TX73_000775 0.26 +0.2
169,522 - TX73_000775 0.26 -0.1
169,553 + TX73_000775 0.29 -0.1
169,625 + TX73_000775 0.36 +0.6
169,638 - TX73_000775 0.37 +1.5
169,662 - TX73_000775 0.39 -0.9
169,668 + TX73_000775 0.40 +0.3
169,678 + TX73_000775 0.41 +0.4
169,790 + TX73_000775 0.52 +0.2
169,793 - TX73_000775 0.52 +0.9
169,811 + TX73_000775 0.54 +0.2
169,811 + TX73_000775 0.54 -0.2
169,811 + TX73_000775 0.54 -0.8
169,811 + TX73_000775 0.54 -0.2
169,811 + TX73_000775 0.54 -0.2
169,811 + TX73_000775 0.54 +0.7
169,811 + TX73_000775 0.54 +0.2
169,813 + TX73_000775 0.54 +0.2
169,813 + TX73_000775 0.54 +0.2
169,819 - TX73_000775 0.54 +0.6
169,819 - TX73_000775 0.54 +0.3
169,819 - TX73_000775 0.54 -0.0
169,819 - TX73_000775 0.54 -0.2
169,819 - TX73_000775 0.54 +0.5
169,819 - TX73_000775 0.54 -0.1
169,819 - TX73_000775 0.54 +0.7
169,819 - TX73_000775 0.54 -0.7
169,819 - TX73_000775 0.54 +0.1
169,819 - TX73_000775 0.54 -0.7
169,838 - TX73_000775 0.56 -0.0
169,872 - TX73_000775 0.59 +0.8
169,893 - TX73_000775 0.61 -0.3
169,893 - TX73_000775 0.61 -0.4
169,919 + TX73_000775 0.64 -0.1
169,919 + TX73_000775 0.64 +0.6
169,958 + TX73_000775 0.68 +0.0
169,958 + TX73_000775 0.68 -0.3
169,958 + TX73_000775 0.68 -0.6
169,987 + TX73_000775 0.70 +0.7
169,987 + TX73_000775 0.70 -0.2
169,987 + TX73_000775 0.70 +0.8
169,995 - TX73_000775 0.71 -0.3
169,995 - TX73_000775 0.71 +0.4
170,019 + TX73_000775 0.73 +0.2
170,035 - TX73_000775 0.75 -0.0
170,035 - TX73_000775 0.75 +0.1
170,042 + TX73_000775 0.76 +0.6
170,042 + TX73_000775 0.76 +0.4
170,050 - TX73_000775 0.76 +0.3
170,050 - TX73_000775 0.76 +0.3
170,060 - TX73_000775 0.77 -0.7
170,093 - TX73_000775 0.80 +0.6
170,093 - TX73_000775 0.80 -0.5
170,119 - TX73_000775 0.83 +0.1
170,172 - TX73_000775 0.88 +0.8
170,189 + TX73_000775 0.90 +0.3
170,197 + -0.8
170,197 - +0.2
170,207 - -0.0
170,209 + +0.6
170,209 - -0.0

Or see this region's nucleotide sequence