Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_010400

Experiment: sodium isethionate sulfur source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_010395 and TX73_010400 overlap by 1 nucleotidesTX73_010400 and TX73_010405 are separated by 96 nucleotides TX73_010395: TX73_010395 - lipid A biosynthesis lauroyl acyltransferase, at 2,272,119 to 2,273,051 _010395 TX73_010400: TX73_010400 - zinc-binding dehydrogenase, at 2,273,051 to 2,274,073 _010400 TX73_010405: TX73_010405 - beta-ketoacyl-ACP synthase, at 2,274,170 to 2,275,450 _010405 Position (kb) 2273 2274 2275Strain fitness (log2 ratio) -2 -1 0 1at 2272.065 kb on + strandat 2272.076 kb on + strandat 2273.052 kb on - strandat 2273.052 kb on - strandat 2274.079 kb on - strandat 2274.090 kb on + strandat 2274.090 kb on + strandat 2274.096 kb on + strandat 2274.097 kb on - strandat 2274.114 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium isethionate sulfur source
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2,272,065 + -0.5
2,272,076 + +1.7
2,273,052 - +0.7
2,273,052 - -2.4
2,274,079 - -1.0
2,274,090 + -2.2
2,274,090 + +0.7
2,274,096 + -1.2
2,274,097 - -1.0
2,274,114 - -0.9

Or see this region's nucleotide sequence