Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_004330

Experiment: sodium isethionate sulfur source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_004325 and TX73_004330 overlap by 4 nucleotidesTX73_004330 and TX73_004335 are separated by 61 nucleotidesTX73_004335 and TX73_004340 are separated by 97 nucleotides TX73_004325: TX73_004325 - threonine synthase, at 933,137 to 934,555 _004325 TX73_004330: TX73_004330 - pitrilysin family protein, at 934,552 to 935,841 _004330 TX73_004335: TX73_004335 - GNAT family protein, at 935,903 to 936,490 _004335 TX73_004340: TX73_004340 - hypothetical protein, at 936,588 to 937,241 _004340 Position (kb) 934 935 936Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 934.530 kb on + strandat 934.601 kb on + strandat 934.611 kb on - strandat 934.680 kb on + strandat 934.683 kb on - strand, within TX73_004330at 934.713 kb on + strand, within TX73_004330at 934.716 kb on - strand, within TX73_004330at 934.725 kb on + strand, within TX73_004330at 934.755 kb on + strand, within TX73_004330at 934.776 kb on + strand, within TX73_004330at 934.777 kb on + strand, within TX73_004330at 934.829 kb on + strand, within TX73_004330at 934.837 kb on - strand, within TX73_004330at 934.846 kb on - strand, within TX73_004330at 934.868 kb on - strand, within TX73_004330at 934.884 kb on + strand, within TX73_004330at 934.907 kb on - strand, within TX73_004330at 934.914 kb on + strand, within TX73_004330at 934.914 kb on - strand, within TX73_004330at 934.932 kb on - strand, within TX73_004330at 934.932 kb on - strand, within TX73_004330at 934.942 kb on + strand, within TX73_004330at 934.942 kb on + strand, within TX73_004330at 934.942 kb on + strand, within TX73_004330at 934.947 kb on + strand, within TX73_004330at 934.950 kb on - strand, within TX73_004330at 934.950 kb on - strand, within TX73_004330at 934.952 kb on + strand, within TX73_004330at 934.955 kb on - strand, within TX73_004330at 934.955 kb on - strand, within TX73_004330at 934.963 kb on + strand, within TX73_004330at 934.994 kb on + strand, within TX73_004330at 934.997 kb on - strand, within TX73_004330at 934.997 kb on - strand, within TX73_004330at 934.997 kb on - strand, within TX73_004330at 934.997 kb on - strand, within TX73_004330at 935.002 kb on - strand, within TX73_004330at 935.002 kb on - strand, within TX73_004330at 935.002 kb on - strand, within TX73_004330at 935.012 kb on + strand, within TX73_004330at 935.012 kb on + strand, within TX73_004330at 935.020 kb on + strand, within TX73_004330at 935.028 kb on - strand, within TX73_004330at 935.033 kb on + strand, within TX73_004330at 935.077 kb on - strand, within TX73_004330at 935.096 kb on + strand, within TX73_004330at 935.110 kb on - strand, within TX73_004330at 935.114 kb on - strand, within TX73_004330at 935.166 kb on - strand, within TX73_004330at 935.173 kb on + strand, within TX73_004330at 935.239 kb on + strand, within TX73_004330at 935.257 kb on - strand, within TX73_004330at 935.265 kb on + strand, within TX73_004330at 935.271 kb on - strand, within TX73_004330at 935.271 kb on - strand, within TX73_004330at 935.277 kb on + strand, within TX73_004330at 935.295 kb on - strand, within TX73_004330at 935.315 kb on + strand, within TX73_004330at 935.330 kb on + strand, within TX73_004330at 935.364 kb on + strand, within TX73_004330at 935.366 kb on + strand, within TX73_004330at 935.382 kb on - strand, within TX73_004330at 935.399 kb on + strand, within TX73_004330at 935.403 kb on + strand, within TX73_004330at 935.422 kb on + strand, within TX73_004330at 935.422 kb on + strand, within TX73_004330at 935.441 kb on - strand, within TX73_004330at 935.449 kb on + strand, within TX73_004330at 935.449 kb on + strand, within TX73_004330at 935.449 kb on + strand, within TX73_004330at 935.467 kb on - strand, within TX73_004330at 935.467 kb on - strand, within TX73_004330at 935.532 kb on + strand, within TX73_004330at 935.547 kb on - strand, within TX73_004330at 935.559 kb on + strand, within TX73_004330at 935.561 kb on - strand, within TX73_004330at 935.565 kb on + strand, within TX73_004330at 935.565 kb on + strand, within TX73_004330at 935.573 kb on - strand, within TX73_004330at 935.640 kb on - strand, within TX73_004330at 935.645 kb on - strand, within TX73_004330at 935.718 kb on + strandat 935.755 kb on + strandat 935.763 kb on - strandat 935.773 kb on + strandat 935.778 kb on + strandat 935.785 kb on + strandat 935.785 kb on + strandat 935.786 kb on - strandat 935.793 kb on - strandat 935.820 kb on + strandat 935.822 kb on - strandat 935.822 kb on - strandat 935.843 kb on - strandat 935.871 kb on - strandat 935.894 kb on - strandat 935.894 kb on - strandat 935.969 kb on - strand, within TX73_004335at 936.003 kb on + strand, within TX73_004335at 936.003 kb on + strand, within TX73_004335at 936.003 kb on + strand, within TX73_004335at 936.003 kb on + strand, within TX73_004335at 936.011 kb on - strand, within TX73_004335at 936.011 kb on - strand, within TX73_004335at 936.011 kb on - strand, within TX73_004335at 936.011 kb on - strand, within TX73_004335at 936.021 kb on - strand, within TX73_004335at 936.028 kb on + strand, within TX73_004335at 936.033 kb on + strand, within TX73_004335at 936.033 kb on + strand, within TX73_004335at 936.033 kb on + strand, within TX73_004335at 936.033 kb on + strand, within TX73_004335at 936.033 kb on + strand, within TX73_004335at 936.033 kb on + strand, within TX73_004335at 936.047 kb on + strand, within TX73_004335at 936.050 kb on - strand, within TX73_004335at 936.055 kb on - strand, within TX73_004335at 936.068 kb on + strand, within TX73_004335at 936.068 kb on + strand, within TX73_004335at 936.071 kb on - strand, within TX73_004335at 936.108 kb on + strand, within TX73_004335at 936.133 kb on + strand, within TX73_004335at 936.133 kb on + strand, within TX73_004335at 936.133 kb on + strand, within TX73_004335at 936.133 kb on + strand, within TX73_004335at 936.136 kb on - strand, within TX73_004335at 936.141 kb on - strand, within TX73_004335at 936.141 kb on - strand, within TX73_004335at 936.190 kb on - strand, within TX73_004335at 936.200 kb on - strand, within TX73_004335at 936.203 kb on - strand, within TX73_004335at 936.215 kb on + strand, within TX73_004335at 936.218 kb on - strand, within TX73_004335at 936.223 kb on - strand, within TX73_004335at 936.223 kb on - strand, within TX73_004335at 936.223 kb on - strand, within TX73_004335at 936.228 kb on - strand, within TX73_004335at 936.268 kb on + strand, within TX73_004335at 936.268 kb on - strand, within TX73_004335at 936.268 kb on - strand, within TX73_004335at 936.273 kb on - strand, within TX73_004335at 936.278 kb on - strand, within TX73_004335at 936.296 kb on - strand, within TX73_004335at 936.298 kb on + strand, within TX73_004335at 936.315 kb on - strand, within TX73_004335at 936.328 kb on - strand, within TX73_004335at 936.377 kb on + strand, within TX73_004335at 936.385 kb on + strand, within TX73_004335at 936.404 kb on + strand, within TX73_004335at 936.404 kb on + strand, within TX73_004335at 936.412 kb on - strand, within TX73_004335at 936.412 kb on - strand, within TX73_004335at 936.414 kb on + strand, within TX73_004335at 936.465 kb on - strandat 936.465 kb on - strandat 936.499 kb on + strandat 936.507 kb on - strandat 936.507 kb on - strandat 936.508 kb on - strandat 936.530 kb on - strandat 936.531 kb on + strandat 936.572 kb on - strandat 936.577 kb on + strandat 936.582 kb on + strandat 936.582 kb on - strandat 936.585 kb on - strandat 936.590 kb on - strandat 936.591 kb on + strandat 936.591 kb on + strandat 936.620 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium isethionate sulfur source
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934,530 + -0.6
934,601 + -1.1
934,611 - +0.4
934,680 + -0.5
934,683 - TX73_004330 0.10 +0.2
934,713 + TX73_004330 0.12 +1.4
934,716 - TX73_004330 0.13 +0.2
934,725 + TX73_004330 0.13 +0.6
934,755 + TX73_004330 0.16 -0.6
934,776 + TX73_004330 0.17 +0.7
934,777 + TX73_004330 0.17 +1.0
934,829 + TX73_004330 0.21 +0.3
934,837 - TX73_004330 0.22 +0.0
934,846 - TX73_004330 0.23 -0.0
934,868 - TX73_004330 0.24 +0.4
934,884 + TX73_004330 0.26 -0.8
934,907 - TX73_004330 0.28 -0.5
934,914 + TX73_004330 0.28 -1.3
934,914 - TX73_004330 0.28 +1.9
934,932 - TX73_004330 0.29 -2.1
934,932 - TX73_004330 0.29 -0.8
934,942 + TX73_004330 0.30 +1.0
934,942 + TX73_004330 0.30 +0.5
934,942 + TX73_004330 0.30 -1.7
934,947 + TX73_004330 0.31 -0.0
934,950 - TX73_004330 0.31 +1.0
934,950 - TX73_004330 0.31 +1.6
934,952 + TX73_004330 0.31 -1.5
934,955 - TX73_004330 0.31 -0.7
934,955 - TX73_004330 0.31 -0.7
934,963 + TX73_004330 0.32 -0.1
934,994 + TX73_004330 0.34 -1.2
934,997 - TX73_004330 0.34 -0.6
934,997 - TX73_004330 0.34 +0.9
934,997 - TX73_004330 0.34 +0.6
934,997 - TX73_004330 0.34 -0.5
935,002 - TX73_004330 0.35 -2.2
935,002 - TX73_004330 0.35 +1.1
935,002 - TX73_004330 0.35 -0.5
935,012 + TX73_004330 0.36 -0.9
935,012 + TX73_004330 0.36 +1.0
935,020 + TX73_004330 0.36 +0.4
935,028 - TX73_004330 0.37 +0.7
935,033 + TX73_004330 0.37 -1.4
935,077 - TX73_004330 0.41 +2.0
935,096 + TX73_004330 0.42 -0.6
935,110 - TX73_004330 0.43 +0.2
935,114 - TX73_004330 0.44 +0.8
935,166 - TX73_004330 0.48 -2.2
935,173 + TX73_004330 0.48 +0.6
935,239 + TX73_004330 0.53 +0.6
935,257 - TX73_004330 0.55 -0.0
935,265 + TX73_004330 0.55 +0.3
935,271 - TX73_004330 0.56 +0.8
935,271 - TX73_004330 0.56 -0.4
935,277 + TX73_004330 0.56 +1.5
935,295 - TX73_004330 0.58 -0.7
935,315 + TX73_004330 0.59 +0.4
935,330 + TX73_004330 0.60 +0.3
935,364 + TX73_004330 0.63 +0.7
935,366 + TX73_004330 0.63 -1.4
935,382 - TX73_004330 0.64 +0.1
935,399 + TX73_004330 0.66 +0.6
935,403 + TX73_004330 0.66 -1.2
935,422 + TX73_004330 0.67 -1.8
935,422 + TX73_004330 0.67 -0.7
935,441 - TX73_004330 0.69 -2.3
935,449 + TX73_004330 0.70 +0.2
935,449 + TX73_004330 0.70 +0.2
935,449 + TX73_004330 0.70 +1.4
935,467 - TX73_004330 0.71 +0.0
935,467 - TX73_004330 0.71 -0.8
935,532 + TX73_004330 0.76 -0.8
935,547 - TX73_004330 0.77 +0.2
935,559 + TX73_004330 0.78 -0.9
935,561 - TX73_004330 0.78 +0.8
935,565 + TX73_004330 0.79 +0.7
935,565 + TX73_004330 0.79 +0.9
935,573 - TX73_004330 0.79 +1.4
935,640 - TX73_004330 0.84 +0.2
935,645 - TX73_004330 0.85 +0.5
935,718 + +0.2
935,755 + +1.1
935,763 - -0.1
935,773 + -0.1
935,778 + +1.1
935,785 + +0.5
935,785 + -0.6
935,786 - -1.8
935,793 - +0.3
935,820 + +0.1
935,822 - -0.7
935,822 - -2.4
935,843 - +0.1
935,871 - -1.1
935,894 - +0.0
935,894 - +0.7
935,969 - TX73_004335 0.11 -0.1
936,003 + TX73_004335 0.17 -0.2
936,003 + TX73_004335 0.17 -2.0
936,003 + TX73_004335 0.17 -1.6
936,003 + TX73_004335 0.17 -0.3
936,011 - TX73_004335 0.18 -2.0
936,011 - TX73_004335 0.18 -1.8
936,011 - TX73_004335 0.18 -0.1
936,011 - TX73_004335 0.18 -1.1
936,021 - TX73_004335 0.20 +1.8
936,028 + TX73_004335 0.21 -2.9
936,033 + TX73_004335 0.22 -0.6
936,033 + TX73_004335 0.22 -1.1
936,033 + TX73_004335 0.22 -2.1
936,033 + TX73_004335 0.22 -0.5
936,033 + TX73_004335 0.22 +0.3
936,033 + TX73_004335 0.22 -2.1
936,047 + TX73_004335 0.24 -0.3
936,050 - TX73_004335 0.25 +1.3
936,055 - TX73_004335 0.26 +1.3
936,068 + TX73_004335 0.28 +1.2
936,068 + TX73_004335 0.28 +0.9
936,071 - TX73_004335 0.29 -0.3
936,108 + TX73_004335 0.35 +0.5
936,133 + TX73_004335 0.39 -0.9
936,133 + TX73_004335 0.39 +0.2
936,133 + TX73_004335 0.39 -0.3
936,133 + TX73_004335 0.39 +0.0
936,136 - TX73_004335 0.40 +0.1
936,141 - TX73_004335 0.40 -1.9
936,141 - TX73_004335 0.40 -1.6
936,190 - TX73_004335 0.49 -1.7
936,200 - TX73_004335 0.51 -0.5
936,203 - TX73_004335 0.51 +0.6
936,215 + TX73_004335 0.53 -0.7
936,218 - TX73_004335 0.54 -0.8
936,223 - TX73_004335 0.54 +0.0
936,223 - TX73_004335 0.54 -1.5
936,223 - TX73_004335 0.54 +1.0
936,228 - TX73_004335 0.55 +0.3
936,268 + TX73_004335 0.62 -0.5
936,268 - TX73_004335 0.62 +0.4
936,268 - TX73_004335 0.62 +0.5
936,273 - TX73_004335 0.63 -1.1
936,278 - TX73_004335 0.64 -0.1
936,296 - TX73_004335 0.67 +0.6
936,298 + TX73_004335 0.67 +0.5
936,315 - TX73_004335 0.70 +0.2
936,328 - TX73_004335 0.72 +0.5
936,377 + TX73_004335 0.81 +0.8
936,385 + TX73_004335 0.82 -0.6
936,404 + TX73_004335 0.85 +0.4
936,404 + TX73_004335 0.85 +0.2
936,412 - TX73_004335 0.87 -0.9
936,412 - TX73_004335 0.87 -1.0
936,414 + TX73_004335 0.87 -2.2
936,465 - +0.1
936,465 - -0.4
936,499 + -1.0
936,507 - +0.7
936,507 - +0.0
936,508 - +0.5
936,530 - -1.2
936,531 + +0.1
936,572 - -1.2
936,577 + +1.1
936,582 + +0.8
936,582 - -2.4
936,585 - +0.1
936,590 - -0.3
936,591 + +3.3
936,591 + +0.4
936,620 + +0.6

Or see this region's nucleotide sequence