Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_002075

Experiment: sodium isethionate sulfur source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_002070 and TX73_002075 are separated by 127 nucleotidesTX73_002075 and TX73_002080 are separated by 200 nucleotides TX73_002070: TX73_002070 - SDR family oxidoreductase, at 437,160 to 437,996 _002070 TX73_002075: TX73_002075 - IS481-like element ISRpa3 family transposase, at 438,124 to 439,293 _002075 TX73_002080: TX73_002080 - NADPH:quinone oxidoreductase family protein, at 439,494 to 440,468 _002080 Position (kb) 438 439 440Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 437.124 kb on + strandat 437.124 kb on + strandat 437.127 kb on - strandat 437.181 kb on - strandat 437.191 kb on + strandat 437.191 kb on + strandat 437.194 kb on - strandat 437.199 kb on - strandat 437.199 kb on - strandat 437.199 kb on - strandat 437.199 kb on - strandat 437.214 kb on - strandat 437.228 kb on + strandat 437.228 kb on - strandat 437.246 kb on - strand, within TX73_002070at 437.251 kb on + strand, within TX73_002070at 437.251 kb on - strand, within TX73_002070at 437.251 kb on - strand, within TX73_002070at 437.264 kb on - strand, within TX73_002070at 437.284 kb on + strand, within TX73_002070at 437.294 kb on + strand, within TX73_002070at 437.294 kb on + strand, within TX73_002070at 437.309 kb on - strand, within TX73_002070at 437.313 kb on + strand, within TX73_002070at 437.342 kb on + strand, within TX73_002070at 437.362 kb on - strand, within TX73_002070at 437.392 kb on + strand, within TX73_002070at 437.392 kb on + strand, within TX73_002070at 437.400 kb on - strand, within TX73_002070at 437.400 kb on - strand, within TX73_002070at 437.400 kb on - strand, within TX73_002070at 437.465 kb on + strand, within TX73_002070at 437.477 kb on - strand, within TX73_002070at 437.484 kb on + strand, within TX73_002070at 437.504 kb on - strand, within TX73_002070at 437.509 kb on + strand, within TX73_002070at 437.522 kb on - strand, within TX73_002070at 437.527 kb on - strand, within TX73_002070at 437.538 kb on + strand, within TX73_002070at 437.539 kb on - strand, within TX73_002070at 437.539 kb on - strand, within TX73_002070at 437.569 kb on + strand, within TX73_002070at 437.572 kb on - strand, within TX73_002070at 437.572 kb on - strand, within TX73_002070at 437.579 kb on - strand, within TX73_002070at 437.583 kb on + strand, within TX73_002070at 437.610 kb on - strand, within TX73_002070at 437.610 kb on - strand, within TX73_002070at 437.624 kb on + strand, within TX73_002070at 437.626 kb on + strand, within TX73_002070at 437.626 kb on + strand, within TX73_002070at 437.633 kb on + strand, within TX73_002070at 437.633 kb on + strand, within TX73_002070at 437.633 kb on + strand, within TX73_002070at 437.633 kb on + strand, within TX73_002070at 437.633 kb on + strand, within TX73_002070at 437.633 kb on + strand, within TX73_002070at 437.641 kb on - strand, within TX73_002070at 437.641 kb on - strand, within TX73_002070at 437.641 kb on - strand, within TX73_002070at 437.641 kb on - strand, within TX73_002070at 437.641 kb on - strand, within TX73_002070at 437.651 kb on - strand, within TX73_002070at 437.651 kb on - strand, within TX73_002070at 437.707 kb on - strand, within TX73_002070at 437.722 kb on + strand, within TX73_002070at 437.724 kb on + strand, within TX73_002070at 437.729 kb on + strand, within TX73_002070at 437.729 kb on + strand, within TX73_002070at 437.760 kb on - strand, within TX73_002070at 437.760 kb on - strand, within TX73_002070at 437.812 kb on + strand, within TX73_002070at 437.821 kb on + strand, within TX73_002070at 437.853 kb on + strand, within TX73_002070at 437.893 kb on - strand, within TX73_002070at 437.903 kb on + strand, within TX73_002070at 437.936 kb on + strandat 437.944 kb on - strandat 437.955 kb on + strandat 437.981 kb on + strandat 437.994 kb on - strandat 438.013 kb on - strandat 438.045 kb on - strandat 438.082 kb on + strandat 438.130 kb on - strandat 438.158 kb on - strandat 438.170 kb on - strandat 438.181 kb on + strandat 438.207 kb on - strandat 438.239 kb on + strandat 438.390 kb on - strand, within TX73_002075at 438.449 kb on - strand, within TX73_002075at 438.458 kb on + strand, within TX73_002075at 438.468 kb on - strand, within TX73_002075at 438.492 kb on - strand, within TX73_002075at 438.742 kb on + strand, within TX73_002075at 438.742 kb on + strand, within TX73_002075at 438.775 kb on + strand, within TX73_002075at 438.775 kb on + strand, within TX73_002075at 438.778 kb on - strand, within TX73_002075at 438.839 kb on + strand, within TX73_002075at 438.861 kb on - strand, within TX73_002075at 438.882 kb on - strand, within TX73_002075at 438.907 kb on - strand, within TX73_002075at 438.926 kb on - strand, within TX73_002075at 438.967 kb on + strand, within TX73_002075at 438.975 kb on - strand, within TX73_002075at 439.003 kb on + strand, within TX73_002075at 439.079 kb on - strand, within TX73_002075at 439.164 kb on - strand, within TX73_002075at 439.223 kb on + strandat 439.232 kb on - strandat 439.258 kb on + strandat 439.266 kb on - strandat 439.286 kb on - strandat 439.297 kb on - strandat 439.297 kb on - strandat 439.324 kb on + strandat 439.327 kb on + strandat 439.354 kb on + strandat 439.354 kb on + strandat 439.354 kb on + strandat 439.360 kb on + strandat 439.362 kb on - strandat 439.362 kb on - strandat 439.362 kb on - strandat 439.372 kb on + strandat 439.380 kb on + strandat 439.662 kb on + strand, within TX73_002080at 439.735 kb on - strand, within TX73_002080at 439.760 kb on - strand, within TX73_002080at 439.870 kb on - strand, within TX73_002080at 439.938 kb on + strand, within TX73_002080at 439.940 kb on + strand, within TX73_002080at 439.941 kb on - strand, within TX73_002080at 439.993 kb on - strand, within TX73_002080at 440.102 kb on + strand, within TX73_002080at 440.221 kb on + strand, within TX73_002080at 440.242 kb on + strand, within TX73_002080at 440.252 kb on + strand, within TX73_002080at 440.285 kb on - strand, within TX73_002080at 440.287 kb on - strand, within TX73_002080at 440.287 kb on - strand, within TX73_002080at 440.287 kb on - strand, within TX73_002080at 440.287 kb on - strand, within TX73_002080

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium isethionate sulfur source
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437,124 + -0.2
437,124 + -0.4
437,127 - +0.6
437,181 - +0.4
437,191 + -1.4
437,191 + +0.4
437,194 - +0.2
437,199 - +0.6
437,199 - -3.3
437,199 - -0.9
437,199 - -1.4
437,214 - +1.4
437,228 + -0.7
437,228 - +0.4
437,246 - TX73_002070 0.10 +0.3
437,251 + TX73_002070 0.11 -0.8
437,251 - TX73_002070 0.11 +0.8
437,251 - TX73_002070 0.11 -1.3
437,264 - TX73_002070 0.12 +0.5
437,284 + TX73_002070 0.15 -0.7
437,294 + TX73_002070 0.16 -0.2
437,294 + TX73_002070 0.16 -0.1
437,309 - TX73_002070 0.18 -1.6
437,313 + TX73_002070 0.18 -0.9
437,342 + TX73_002070 0.22 -0.3
437,362 - TX73_002070 0.24 -0.4
437,392 + TX73_002070 0.28 -1.3
437,392 + TX73_002070 0.28 -2.4
437,400 - TX73_002070 0.29 +0.5
437,400 - TX73_002070 0.29 +0.5
437,400 - TX73_002070 0.29 +0.5
437,465 + TX73_002070 0.36 -0.5
437,477 - TX73_002070 0.38 +0.8
437,484 + TX73_002070 0.39 +0.3
437,504 - TX73_002070 0.41 +0.2
437,509 + TX73_002070 0.42 -1.9
437,522 - TX73_002070 0.43 -1.0
437,527 - TX73_002070 0.44 +0.3
437,538 + TX73_002070 0.45 -0.7
437,539 - TX73_002070 0.45 +0.2
437,539 - TX73_002070 0.45 -0.4
437,569 + TX73_002070 0.49 +0.4
437,572 - TX73_002070 0.49 +1.0
437,572 - TX73_002070 0.49 -0.7
437,579 - TX73_002070 0.50 +1.5
437,583 + TX73_002070 0.51 +0.9
437,610 - TX73_002070 0.54 -1.5
437,610 - TX73_002070 0.54 -0.5
437,624 + TX73_002070 0.55 +0.0
437,626 + TX73_002070 0.56 -0.3
437,626 + TX73_002070 0.56 -0.1
437,633 + TX73_002070 0.57 -1.2
437,633 + TX73_002070 0.57 +1.0
437,633 + TX73_002070 0.57 +1.8
437,633 + TX73_002070 0.57 -0.5
437,633 + TX73_002070 0.57 -0.8
437,633 + TX73_002070 0.57 +0.3
437,641 - TX73_002070 0.57 +0.5
437,641 - TX73_002070 0.57 -0.2
437,641 - TX73_002070 0.57 +0.5
437,641 - TX73_002070 0.57 -0.2
437,641 - TX73_002070 0.57 -2.3
437,651 - TX73_002070 0.59 +0.6
437,651 - TX73_002070 0.59 -0.4
437,707 - TX73_002070 0.65 -0.6
437,722 + TX73_002070 0.67 -2.0
437,724 + TX73_002070 0.67 -2.8
437,729 + TX73_002070 0.68 -1.6
437,729 + TX73_002070 0.68 -0.6
437,760 - TX73_002070 0.72 -1.3
437,760 - TX73_002070 0.72 -1.4
437,812 + TX73_002070 0.78 +0.5
437,821 + TX73_002070 0.79 -0.4
437,853 + TX73_002070 0.83 -0.4
437,893 - TX73_002070 0.88 +0.5
437,903 + TX73_002070 0.89 -0.0
437,936 + +1.1
437,944 - -2.7
437,955 + -0.4
437,981 + +1.7
437,994 - +0.3
438,013 - -1.9
438,045 - -0.6
438,082 + +0.2
438,130 - -0.0
438,158 - +1.2
438,170 - -0.2
438,181 + -0.3
438,207 - -0.5
438,239 + +0.2
438,390 - TX73_002075 0.23 +1.1
438,449 - TX73_002075 0.28 -0.4
438,458 + TX73_002075 0.29 -1.4
438,468 - TX73_002075 0.29 +0.3
438,492 - TX73_002075 0.31 +0.0
438,742 + TX73_002075 0.53 +1.0
438,742 + TX73_002075 0.53 +0.1
438,775 + TX73_002075 0.56 +0.3
438,775 + TX73_002075 0.56 +0.2
438,778 - TX73_002075 0.56 -0.7
438,839 + TX73_002075 0.61 -0.7
438,861 - TX73_002075 0.63 -0.6
438,882 - TX73_002075 0.65 -2.0
438,907 - TX73_002075 0.67 -0.4
438,926 - TX73_002075 0.69 +0.1
438,967 + TX73_002075 0.72 -0.2
438,975 - TX73_002075 0.73 +1.3
439,003 + TX73_002075 0.75 +0.7
439,079 - TX73_002075 0.82 -0.9
439,164 - TX73_002075 0.89 -2.7
439,223 + -0.7
439,232 - +0.6
439,258 + +0.4
439,266 - +2.1
439,286 - -1.0
439,297 - +0.7
439,297 - +0.1
439,324 + +1.1
439,327 + +0.2
439,354 + +0.5
439,354 + +0.7
439,354 + -0.1
439,360 + +0.9
439,362 - -1.8
439,362 - +0.1
439,362 - +0.2
439,372 + -1.9
439,380 + -2.2
439,662 + TX73_002080 0.17 +0.8
439,735 - TX73_002080 0.25 +0.7
439,760 - TX73_002080 0.27 -1.4
439,870 - TX73_002080 0.39 +1.5
439,938 + TX73_002080 0.46 -0.4
439,940 + TX73_002080 0.46 -1.4
439,941 - TX73_002080 0.46 -0.4
439,993 - TX73_002080 0.51 -0.2
440,102 + TX73_002080 0.62 -0.6
440,221 + TX73_002080 0.75 -1.1
440,242 + TX73_002080 0.77 +1.2
440,252 + TX73_002080 0.78 -0.0
440,285 - TX73_002080 0.81 -0.1
440,287 - TX73_002080 0.81 -0.0
440,287 - TX73_002080 0.81 +2.0
440,287 - TX73_002080 0.81 +0.1
440,287 - TX73_002080 0.81 -0.3

Or see this region's nucleotide sequence