Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_016125

Experiment: sodium isethionate sulfur source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_016120 and TX73_016125 are separated by 19 nucleotidesTX73_016125 and TX73_016130 are separated by 143 nucleotidesTX73_016130 and TX73_016135 are separated by 195 nucleotides TX73_016120: TX73_016120 - aspartate carbamoyltransferase catalytic subunit, at 3,522,154 to 3,523,107 _016120 TX73_016125: TX73_016125 - dihydroorotase, at 3,523,127 to 3,524,437 _016125 TX73_016130: TX73_016130 - glycerol-3-phosphate 1-O-acyltransferase PlsY, at 3,524,581 to 3,525,192 _016130 TX73_016135: TX73_016135 - DNA-processing protein DprA, at 3,525,388 to 3,526,461 _016135 Position (kb) 3523 3524 3525Strain fitness (log2 ratio) -1 0 1 2at 3522.135 kb on + strandat 3522.156 kb on - strandat 3523.108 kb on + strandat 3523.148 kb on + strandat 3524.419 kb on - strandat 3524.419 kb on - strandat 3524.419 kb on - strandat 3524.431 kb on + strandat 3524.439 kb on - strandat 3524.441 kb on + strandat 3524.449 kb on - strandat 3524.489 kb on + strandat 3524.494 kb on + strandat 3524.502 kb on - strandat 3524.502 kb on - strandat 3524.502 kb on - strandat 3524.502 kb on - strandat 3525.244 kb on - strandat 3525.274 kb on + strandat 3525.294 kb on - strandat 3525.333 kb on + strandat 3525.333 kb on + strandat 3525.341 kb on - strandat 3525.348 kb on + strandat 3525.353 kb on + strandat 3525.356 kb on - strandat 3525.365 kb on + strandat 3525.396 kb on + strandat 3525.396 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium isethionate sulfur source
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3,522,135 + -1.2
3,522,156 - +0.4
3,523,108 + +0.8
3,523,148 + +1.9
3,524,419 - -1.7
3,524,419 - +0.9
3,524,419 - -0.5
3,524,431 + -1.5
3,524,439 - +0.4
3,524,441 + +0.0
3,524,449 - +0.5
3,524,489 + -1.0
3,524,494 + +0.3
3,524,502 - -0.2
3,524,502 - -0.7
3,524,502 - -0.5
3,524,502 - -0.1
3,525,244 - -0.4
3,525,274 + -1.7
3,525,294 - +0.2
3,525,333 + -0.1
3,525,333 + +0.1
3,525,341 - +0.1
3,525,348 + +0.1
3,525,353 + -0.2
3,525,356 - +0.7
3,525,365 + -0.2
3,525,396 + -0.6
3,525,396 + +0.6

Or see this region's nucleotide sequence