Experiment: Taurine sulfur source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_016395 and TX73_016400 are separated by 24 nucleotides TX73_016400 and TX73_016405 are separated by 105 nucleotides TX73_016405 and TX73_016410 are separated by 18 nucleotides
TX73_016395: TX73_016395 - EAL domain-containing protein, at 3,576,135 to 3,578,756
_016395
TX73_016400: TX73_016400 - 4-oxalocrotonate tautomerase family protein, at 3,578,781 to 3,579,212
_016400
TX73_016405: TX73_016405 - LysR family transcriptional regulator, at 3,579,318 to 3,580,166
_016405
TX73_016410: TX73_016410 - acylphosphatase, at 3,580,185 to 3,580,484
_016410
Position (kb)
3578
3579
3580 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3577.788 kb on + strand, within TX73_016395 at 3577.819 kb on - strand, within TX73_016395 at 3577.847 kb on - strand, within TX73_016395 at 3577.965 kb on + strand, within TX73_016395 at 3578.046 kb on - strand, within TX73_016395 at 3578.172 kb on - strand, within TX73_016395 at 3578.176 kb on + strand, within TX73_016395 at 3578.224 kb on - strand, within TX73_016395 at 3578.280 kb on - strand, within TX73_016395 at 3578.302 kb on + strand, within TX73_016395 at 3578.394 kb on - strand, within TX73_016395 at 3578.426 kb on + strand, within TX73_016395 at 3578.493 kb on + strand, within TX73_016395 at 3578.493 kb on + strand, within TX73_016395 at 3578.499 kb on - strand at 3578.499 kb on - strand at 3578.508 kb on + strand at 3578.516 kb on - strand at 3578.559 kb on - strand at 3578.600 kb on + strand at 3578.632 kb on - strand at 3578.688 kb on - strand at 3578.712 kb on - strand at 3578.742 kb on - strand at 3578.758 kb on - strand at 3578.786 kb on - strand at 3578.786 kb on - strand at 3578.792 kb on - strand at 3578.801 kb on - strand at 3578.815 kb on + strand at 3578.827 kb on + strand, within TX73_016400 at 3578.839 kb on + strand, within TX73_016400 at 3578.852 kb on - strand, within TX73_016400 at 3578.858 kb on + strand, within TX73_016400 at 3578.862 kb on + strand, within TX73_016400 at 3578.868 kb on - strand, within TX73_016400 at 3578.879 kb on + strand, within TX73_016400 at 3578.881 kb on + strand, within TX73_016400 at 3578.889 kb on - strand, within TX73_016400 at 3579.007 kb on + strand, within TX73_016400 at 3579.085 kb on - strand, within TX73_016400 at 3579.099 kb on + strand, within TX73_016400 at 3579.107 kb on - strand, within TX73_016400 at 3579.111 kb on + strand, within TX73_016400 at 3579.184 kb on + strand at 3579.221 kb on + strand at 3579.229 kb on - strand at 3579.255 kb on - strand at 3579.407 kb on + strand, within TX73_016405 at 3579.411 kb on - strand, within TX73_016405 at 3579.457 kb on + strand, within TX73_016405 at 3579.495 kb on - strand, within TX73_016405 at 3579.515 kb on - strand, within TX73_016405 at 3579.601 kb on + strand, within TX73_016405 at 3579.639 kb on + strand, within TX73_016405 at 3579.659 kb on + strand, within TX73_016405 at 3579.689 kb on + strand, within TX73_016405 at 3579.708 kb on - strand, within TX73_016405 at 3579.717 kb on + strand, within TX73_016405 at 3579.717 kb on + strand, within TX73_016405 at 3579.768 kb on - strand, within TX73_016405 at 3579.777 kb on + strand, within TX73_016405 at 3579.778 kb on + strand, within TX73_016405 at 3579.834 kb on + strand, within TX73_016405 at 3579.842 kb on - strand, within TX73_016405 at 3579.903 kb on + strand, within TX73_016405 at 3579.916 kb on - strand, within TX73_016405 at 3579.921 kb on - strand, within TX73_016405 at 3579.946 kb on - strand, within TX73_016405 at 3580.017 kb on + strand, within TX73_016405 at 3580.113 kb on - strand at 3580.130 kb on - strand at 3580.132 kb on - strand at 3580.184 kb on - strand at 3580.189 kb on - strand at 3580.201 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Taurine sulfur source remove 3,577,788 + TX73_016395 0.63 -0.6 3,577,819 - TX73_016395 0.64 -0.7 3,577,847 - TX73_016395 0.65 +0.4 3,577,965 + TX73_016395 0.70 -0.3 3,578,046 - TX73_016395 0.73 +0.2 3,578,172 - TX73_016395 0.78 -0.1 3,578,176 + TX73_016395 0.78 -0.3 3,578,224 - TX73_016395 0.80 +0.7 3,578,280 - TX73_016395 0.82 +0.2 3,578,302 + TX73_016395 0.83 +0.3 3,578,394 - TX73_016395 0.86 +0.4 3,578,426 + TX73_016395 0.87 -1.5 3,578,493 + TX73_016395 0.90 -0.8 3,578,493 + TX73_016395 0.90 +0.7 3,578,499 - -0.0 3,578,499 - +0.4 3,578,508 + +0.5 3,578,516 - +0.7 3,578,559 - -1.9 3,578,600 + +0.7 3,578,632 - -1.1 3,578,688 - -0.1 3,578,712 - -0.1 3,578,742 - -0.0 3,578,758 - +1.9 3,578,786 - -1.1 3,578,786 - +1.4 3,578,792 - +0.1 3,578,801 - -0.2 3,578,815 + -0.3 3,578,827 + TX73_016400 0.11 -0.9 3,578,839 + TX73_016400 0.13 +0.3 3,578,852 - TX73_016400 0.16 +0.7 3,578,858 + TX73_016400 0.18 +0.9 3,578,862 + TX73_016400 0.19 +0.7 3,578,868 - TX73_016400 0.20 +0.4 3,578,879 + TX73_016400 0.23 +1.0 3,578,881 + TX73_016400 0.23 +0.3 3,578,889 - TX73_016400 0.25 +1.0 3,579,007 + TX73_016400 0.52 +0.6 3,579,085 - TX73_016400 0.70 -1.1 3,579,099 + TX73_016400 0.74 +0.3 3,579,107 - TX73_016400 0.75 -1.1 3,579,111 + TX73_016400 0.76 -0.4 3,579,184 + +0.1 3,579,221 + -0.1 3,579,229 - -0.8 3,579,255 - +0.0 3,579,407 + TX73_016405 0.10 -1.3 3,579,411 - TX73_016405 0.11 -0.1 3,579,457 + TX73_016405 0.16 +0.0 3,579,495 - TX73_016405 0.21 +0.6 3,579,515 - TX73_016405 0.23 +0.9 3,579,601 + TX73_016405 0.33 -1.2 3,579,639 + TX73_016405 0.38 -0.3 3,579,659 + TX73_016405 0.40 -0.3 3,579,689 + TX73_016405 0.44 +1.3 3,579,708 - TX73_016405 0.46 +0.4 3,579,717 + TX73_016405 0.47 +0.2 3,579,717 + TX73_016405 0.47 +1.2 3,579,768 - TX73_016405 0.53 +0.2 3,579,777 + TX73_016405 0.54 -0.3 3,579,778 + TX73_016405 0.54 +1.0 3,579,834 + TX73_016405 0.61 -0.4 3,579,842 - TX73_016405 0.62 -0.4 3,579,903 + TX73_016405 0.69 +0.6 3,579,916 - TX73_016405 0.70 -0.3 3,579,921 - TX73_016405 0.71 +0.7 3,579,946 - TX73_016405 0.74 -0.0 3,580,017 + TX73_016405 0.82 +0.5 3,580,113 - -1.1 3,580,130 - +0.3 3,580,132 - -0.5 3,580,184 - +0.6 3,580,189 - -0.6 3,580,201 + -0.6
Or see this region's nucleotide sequence