Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_003510

Experiment: Taurine sulfur source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_003505 and TX73_003510 are separated by 326 nucleotidesTX73_003510 and TX73_003515 are separated by 23 nucleotides TX73_003505: TX73_003505 - benzoyl-CoA 2,3-epoxidase subunit BoxB, at 748,212 to 749,663 _003505 TX73_003510: TX73_003510 - NADPH-dependent glutamate synthase, at 749,990 to 752,974 _003510 TX73_003515: TX73_003515 - YgiQ family radical SAM protein, at 752,998 to 755,031 _003515 Position (kb) 749 750 751 752 753Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 748.992 kb on + strand, within TX73_003505at 748.992 kb on + strand, within TX73_003505at 749.088 kb on + strand, within TX73_003505at 749.096 kb on - strand, within TX73_003505at 749.098 kb on + strand, within TX73_003505at 749.239 kb on + strand, within TX73_003505at 749.247 kb on + strand, within TX73_003505at 749.308 kb on + strand, within TX73_003505at 749.370 kb on + strand, within TX73_003505at 749.441 kb on + strand, within TX73_003505at 749.441 kb on + strand, within TX73_003505at 749.441 kb on + strand, within TX73_003505at 749.449 kb on - strand, within TX73_003505at 749.468 kb on - strand, within TX73_003505at 749.472 kb on + strand, within TX73_003505at 749.494 kb on + strand, within TX73_003505at 749.567 kb on + strandat 749.575 kb on - strandat 749.589 kb on + strandat 749.617 kb on - strandat 749.621 kb on + strandat 749.645 kb on + strandat 749.665 kb on - strandat 749.685 kb on - strandat 749.688 kb on + strandat 749.705 kb on + strandat 749.705 kb on + strandat 749.713 kb on - strandat 749.713 kb on - strandat 749.713 kb on - strandat 749.775 kb on + strandat 749.788 kb on + strandat 749.791 kb on + strandat 749.809 kb on - strandat 749.816 kb on + strandat 749.830 kb on + strandat 749.847 kb on + strandat 749.847 kb on + strandat 749.886 kb on - strandat 749.954 kb on - strandat 749.962 kb on - strandat 749.965 kb on + strandat 750.000 kb on - strandat 750.007 kb on - strandat 750.018 kb on + strandat 750.024 kb on - strandat 750.087 kb on + strandat 750.159 kb on - strandat 750.161 kb on + strandat 750.163 kb on + strandat 750.187 kb on + strandat 750.187 kb on + strandat 750.193 kb on + strandat 750.195 kb on - strandat 750.195 kb on - strandat 750.195 kb on - strandat 750.195 kb on - strandat 750.201 kb on - strandat 750.206 kb on + strandat 750.206 kb on - strandat 750.217 kb on + strandat 750.220 kb on + strandat 750.225 kb on - strandat 750.225 kb on - strandat 750.225 kb on - strandat 750.283 kb on + strandat 750.296 kb on + strand, within TX73_003510at 750.333 kb on + strand, within TX73_003510at 750.380 kb on + strand, within TX73_003510at 750.409 kb on - strand, within TX73_003510at 750.490 kb on + strand, within TX73_003510at 750.498 kb on - strand, within TX73_003510at 750.508 kb on - strand, within TX73_003510at 750.536 kb on - strand, within TX73_003510at 750.546 kb on - strand, within TX73_003510at 750.592 kb on + strand, within TX73_003510at 750.600 kb on + strand, within TX73_003510at 750.608 kb on - strand, within TX73_003510at 750.609 kb on + strand, within TX73_003510at 750.617 kb on - strand, within TX73_003510at 750.628 kb on + strand, within TX73_003510at 750.651 kb on + strand, within TX73_003510at 750.763 kb on - strand, within TX73_003510at 750.862 kb on - strand, within TX73_003510at 750.914 kb on - strand, within TX73_003510at 750.987 kb on + strand, within TX73_003510at 750.996 kb on + strand, within TX73_003510at 751.009 kb on - strand, within TX73_003510at 751.166 kb on - strand, within TX73_003510at 751.218 kb on - strand, within TX73_003510at 751.356 kb on - strand, within TX73_003510at 751.369 kb on + strand, within TX73_003510at 751.369 kb on + strand, within TX73_003510at 751.375 kb on - strand, within TX73_003510at 751.377 kb on - strand, within TX73_003510at 751.381 kb on + strand, within TX73_003510at 751.402 kb on + strand, within TX73_003510at 751.410 kb on - strand, within TX73_003510at 751.420 kb on + strand, within TX73_003510at 751.513 kb on - strand, within TX73_003510at 751.518 kb on + strand, within TX73_003510at 751.536 kb on - strand, within TX73_003510at 751.558 kb on + strand, within TX73_003510at 751.583 kb on - strand, within TX73_003510at 751.629 kb on - strand, within TX73_003510at 751.647 kb on - strand, within TX73_003510at 751.651 kb on + strand, within TX73_003510at 751.651 kb on + strand, within TX73_003510at 751.659 kb on - strand, within TX73_003510at 751.668 kb on - strand, within TX73_003510at 751.701 kb on + strand, within TX73_003510at 751.771 kb on + strand, within TX73_003510at 751.780 kb on + strand, within TX73_003510at 751.792 kb on - strand, within TX73_003510at 751.796 kb on + strand, within TX73_003510at 751.804 kb on - strand, within TX73_003510at 751.833 kb on - strand, within TX73_003510at 751.849 kb on + strand, within TX73_003510at 751.857 kb on - strand, within TX73_003510at 751.929 kb on - strand, within TX73_003510at 751.978 kb on + strand, within TX73_003510at 752.058 kb on - strand, within TX73_003510at 752.124 kb on + strand, within TX73_003510at 752.150 kb on + strand, within TX73_003510at 752.230 kb on - strand, within TX73_003510at 752.235 kb on + strand, within TX73_003510at 752.266 kb on + strand, within TX73_003510at 752.266 kb on + strand, within TX73_003510at 752.266 kb on + strand, within TX73_003510at 752.274 kb on - strand, within TX73_003510at 752.319 kb on + strand, within TX73_003510at 752.336 kb on - strand, within TX73_003510at 752.346 kb on + strand, within TX73_003510at 752.355 kb on + strand, within TX73_003510at 752.363 kb on - strand, within TX73_003510at 752.381 kb on - strand, within TX73_003510at 752.430 kb on + strand, within TX73_003510at 752.456 kb on - strand, within TX73_003510at 752.532 kb on + strand, within TX73_003510at 752.540 kb on - strand, within TX73_003510at 752.540 kb on - strand, within TX73_003510at 752.540 kb on - strand, within TX73_003510at 752.582 kb on + strand, within TX73_003510at 752.635 kb on - strand, within TX73_003510at 752.654 kb on - strand, within TX73_003510at 752.675 kb on - strand, within TX73_003510at 752.685 kb on - strandat 752.726 kb on - strandat 752.775 kb on + strandat 752.810 kb on - strandat 752.810 kb on - strandat 752.827 kb on - strandat 752.928 kb on - strandat 752.951 kb on + strandat 752.971 kb on - strandat 752.973 kb on - strandat 752.999 kb on + strandat 753.136 kb on + strandat 753.158 kb on + strandat 753.160 kb on + strandat 753.177 kb on + strandat 753.195 kb on + strandat 753.237 kb on - strand, within TX73_003515at 753.242 kb on + strand, within TX73_003515at 753.242 kb on + strand, within TX73_003515at 753.250 kb on - strand, within TX73_003515at 753.258 kb on - strand, within TX73_003515at 753.264 kb on + strand, within TX73_003515at 753.340 kb on + strand, within TX73_003515at 753.341 kb on + strand, within TX73_003515at 753.349 kb on + strand, within TX73_003515at 753.575 kb on - strand, within TX73_003515at 753.704 kb on + strand, within TX73_003515at 753.717 kb on - strand, within TX73_003515at 753.718 kb on + strand, within TX73_003515at 753.745 kb on + strand, within TX73_003515at 753.745 kb on - strand, within TX73_003515at 753.790 kb on - strand, within TX73_003515at 753.886 kb on - strand, within TX73_003515at 753.904 kb on + strand, within TX73_003515at 753.928 kb on + strand, within TX73_003515at 753.928 kb on + strand, within TX73_003515at 753.936 kb on - strand, within TX73_003515at 753.936 kb on - strand, within TX73_003515at 753.936 kb on - strand, within TX73_003515at 753.936 kb on - strand, within TX73_003515at 753.936 kb on - strand, within TX73_003515

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Per-strain Table

Position Strand Gene LocusTag Fraction Taurine sulfur source
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748,992 + TX73_003505 0.54 +0.6
748,992 + TX73_003505 0.54 -0.2
749,088 + TX73_003505 0.60 -1.2
749,096 - TX73_003505 0.61 +0.5
749,098 + TX73_003505 0.61 +0.2
749,239 + TX73_003505 0.71 +0.1
749,247 + TX73_003505 0.71 +0.2
749,308 + TX73_003505 0.75 -0.1
749,370 + TX73_003505 0.80 -1.2
749,441 + TX73_003505 0.85 +0.4
749,441 + TX73_003505 0.85 +0.2
749,441 + TX73_003505 0.85 -0.2
749,449 - TX73_003505 0.85 +0.1
749,468 - TX73_003505 0.87 -0.3
749,472 + TX73_003505 0.87 +0.5
749,494 + TX73_003505 0.88 -0.4
749,567 + +0.1
749,575 - -0.1
749,589 + +0.4
749,617 - +0.1
749,621 + -0.2
749,645 + -0.3
749,665 - -0.3
749,685 - -0.1
749,688 + -0.1
749,705 + +0.4
749,705 + -0.4
749,713 - -0.5
749,713 - -0.8
749,713 - +0.6
749,775 + -0.0
749,788 + +0.1
749,791 + +0.9
749,809 - +0.1
749,816 + +0.1
749,830 + +0.1
749,847 + -0.1
749,847 + +0.1
749,886 - +1.0
749,954 - -0.4
749,962 - +0.6
749,965 + +0.6
750,000 - +0.3
750,007 - +0.1
750,018 + +0.2
750,024 - -0.2
750,087 + -0.4
750,159 - -0.9
750,161 + -0.3
750,163 + -0.0
750,187 + -0.1
750,187 + -0.5
750,193 + -0.4
750,195 - -0.6
750,195 - -0.9
750,195 - -0.2
750,195 - +0.1
750,201 - -0.3
750,206 + -0.7
750,206 - -0.0
750,217 + +0.6
750,220 + -0.3
750,225 - -0.8
750,225 - -0.3
750,225 - -0.1
750,283 + -0.4
750,296 + TX73_003510 0.10 -0.9
750,333 + TX73_003510 0.11 -3.1
750,380 + TX73_003510 0.13 -1.2
750,409 - TX73_003510 0.14 -0.4
750,490 + TX73_003510 0.17 -0.2
750,498 - TX73_003510 0.17 -0.6
750,508 - TX73_003510 0.17 -0.9
750,536 - TX73_003510 0.18 +0.6
750,546 - TX73_003510 0.19 -0.2
750,592 + TX73_003510 0.20 -0.5
750,600 + TX73_003510 0.20 -0.6
750,608 - TX73_003510 0.21 +0.4
750,609 + TX73_003510 0.21 -0.6
750,617 - TX73_003510 0.21 -0.2
750,628 + TX73_003510 0.21 +0.1
750,651 + TX73_003510 0.22 +2.5
750,763 - TX73_003510 0.26 +0.8
750,862 - TX73_003510 0.29 -0.2
750,914 - TX73_003510 0.31 -0.3
750,987 + TX73_003510 0.33 -0.6
750,996 + TX73_003510 0.34 -2.4
751,009 - TX73_003510 0.34 -0.8
751,166 - TX73_003510 0.39 -0.4
751,218 - TX73_003510 0.41 -0.7
751,356 - TX73_003510 0.46 -0.6
751,369 + TX73_003510 0.46 -0.7
751,369 + TX73_003510 0.46 -0.5
751,375 - TX73_003510 0.46 -0.7
751,377 - TX73_003510 0.46 -0.5
751,381 + TX73_003510 0.47 -0.5
751,402 + TX73_003510 0.47 -0.8
751,410 - TX73_003510 0.48 -1.4
751,420 + TX73_003510 0.48 -0.4
751,513 - TX73_003510 0.51 -1.1
751,518 + TX73_003510 0.51 -0.9
751,536 - TX73_003510 0.52 -0.3
751,558 + TX73_003510 0.53 +0.3
751,583 - TX73_003510 0.53 -0.2
751,629 - TX73_003510 0.55 -0.4
751,647 - TX73_003510 0.56 +0.3
751,651 + TX73_003510 0.56 +0.1
751,651 + TX73_003510 0.56 -0.0
751,659 - TX73_003510 0.56 -0.8
751,668 - TX73_003510 0.56 -0.7
751,701 + TX73_003510 0.57 -0.9
751,771 + TX73_003510 0.60 -0.3
751,780 + TX73_003510 0.60 +0.1
751,792 - TX73_003510 0.60 -0.2
751,796 + TX73_003510 0.61 -0.9
751,804 - TX73_003510 0.61 -0.2
751,833 - TX73_003510 0.62 -0.0
751,849 + TX73_003510 0.62 -0.3
751,857 - TX73_003510 0.63 -0.5
751,929 - TX73_003510 0.65 -0.6
751,978 + TX73_003510 0.67 -0.2
752,058 - TX73_003510 0.69 -0.0
752,124 + TX73_003510 0.71 -0.2
752,150 + TX73_003510 0.72 +0.5
752,230 - TX73_003510 0.75 -0.2
752,235 + TX73_003510 0.75 -1.9
752,266 + TX73_003510 0.76 -1.0
752,266 + TX73_003510 0.76 +0.0
752,266 + TX73_003510 0.76 -0.3
752,274 - TX73_003510 0.77 -0.4
752,319 + TX73_003510 0.78 +0.1
752,336 - TX73_003510 0.79 -3.2
752,346 + TX73_003510 0.79 -0.7
752,355 + TX73_003510 0.79 -0.4
752,363 - TX73_003510 0.79 +1.2
752,381 - TX73_003510 0.80 +0.3
752,430 + TX73_003510 0.82 +0.1
752,456 - TX73_003510 0.83 +0.2
752,532 + TX73_003510 0.85 +0.1
752,540 - TX73_003510 0.85 +0.1
752,540 - TX73_003510 0.85 -0.5
752,540 - TX73_003510 0.85 -0.2
752,582 + TX73_003510 0.87 -0.9
752,635 - TX73_003510 0.89 +0.5
752,654 - TX73_003510 0.89 +0.4
752,675 - TX73_003510 0.90 +0.3
752,685 - +0.1
752,726 - -0.5
752,775 + -0.3
752,810 - -0.7
752,810 - -1.9
752,827 - -0.6
752,928 - -1.1
752,951 + -0.1
752,971 - -0.6
752,973 - -0.1
752,999 + -0.1
753,136 + +0.6
753,158 + +0.6
753,160 + -0.3
753,177 + +0.7
753,195 + +0.0
753,237 - TX73_003515 0.12 +0.9
753,242 + TX73_003515 0.12 +0.1
753,242 + TX73_003515 0.12 +0.2
753,250 - TX73_003515 0.12 -0.1
753,258 - TX73_003515 0.13 +0.4
753,264 + TX73_003515 0.13 +1.3
753,340 + TX73_003515 0.17 -0.2
753,341 + TX73_003515 0.17 -0.0
753,349 + TX73_003515 0.17 -0.1
753,575 - TX73_003515 0.28 -0.8
753,704 + TX73_003515 0.35 +1.0
753,717 - TX73_003515 0.35 -0.2
753,718 + TX73_003515 0.35 +0.3
753,745 + TX73_003515 0.37 -0.2
753,745 - TX73_003515 0.37 -0.0
753,790 - TX73_003515 0.39 -0.7
753,886 - TX73_003515 0.44 +0.3
753,904 + TX73_003515 0.45 -0.0
753,928 + TX73_003515 0.46 -0.1
753,928 + TX73_003515 0.46 +0.2
753,936 - TX73_003515 0.46 +0.3
753,936 - TX73_003515 0.46 +0.5
753,936 - TX73_003515 0.46 +0.4
753,936 - TX73_003515 0.46 +0.2
753,936 - TX73_003515 0.46 +0.5

Or see this region's nucleotide sequence