Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_006450

Experiment: ethyl methyl sulfide sulfur source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_006445 and TX73_006450 are separated by 188 nucleotidesTX73_006450 and TX73_006455 are separated by 114 nucleotides TX73_006445: TX73_006445 - acetamidase/formamidase family protein, at 1,375,210 to 1,376,439 _006445 TX73_006450: TX73_006450 - zinc ribbon domain-containing protein, at 1,376,628 to 1,376,972 _006450 TX73_006455: TX73_006455 - adenosylcobinamide-GDP ribazoletransferase, at 1,377,087 to 1,377,884 _006455 Position (kb) 1376 1377Strain fitness (log2 ratio) -1 0 1 2at 1375.669 kb on - strand, within TX73_006445at 1375.696 kb on - strand, within TX73_006445at 1375.741 kb on + strand, within TX73_006445at 1375.821 kb on + strand, within TX73_006445at 1375.821 kb on + strand, within TX73_006445at 1375.821 kb on + strand, within TX73_006445at 1375.827 kb on + strand, within TX73_006445at 1375.829 kb on - strand, within TX73_006445at 1375.955 kb on - strand, within TX73_006445at 1375.982 kb on - strand, within TX73_006445at 1376.028 kb on + strand, within TX73_006445at 1376.044 kb on + strand, within TX73_006445at 1376.243 kb on + strand, within TX73_006445at 1376.256 kb on - strand, within TX73_006445at 1376.276 kb on + strand, within TX73_006445at 1376.319 kb on + strandat 1376.588 kb on + strandat 1376.716 kb on - strand, within TX73_006450at 1376.808 kb on - strand, within TX73_006450at 1376.821 kb on - strand, within TX73_006450at 1376.843 kb on + strand, within TX73_006450at 1376.891 kb on - strand, within TX73_006450at 1376.969 kb on - strandat 1376.981 kb on - strandat 1376.981 kb on - strandat 1377.001 kb on + strandat 1377.067 kb on - strandat 1377.735 kb on - strand, within TX73_006455at 1377.758 kb on + strand, within TX73_006455at 1377.763 kb on + strand, within TX73_006455at 1377.869 kb on + strandat 1377.904 kb on + strandat 1377.904 kb on + strandat 1377.912 kb on - strandat 1377.912 kb on - strandat 1377.912 kb on - strandat 1377.919 kb on + strandat 1377.932 kb on + strandat 1377.953 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ethyl methyl sulfide sulfur source
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1,375,669 - TX73_006445 0.37 -0.7
1,375,696 - TX73_006445 0.40 +0.1
1,375,741 + TX73_006445 0.43 +0.5
1,375,821 + TX73_006445 0.50 -1.0
1,375,821 + TX73_006445 0.50 +0.3
1,375,821 + TX73_006445 0.50 +1.2
1,375,827 + TX73_006445 0.50 -0.1
1,375,829 - TX73_006445 0.50 +0.8
1,375,955 - TX73_006445 0.61 -0.7
1,375,982 - TX73_006445 0.63 +0.0
1,376,028 + TX73_006445 0.67 +0.9
1,376,044 + TX73_006445 0.68 -0.5
1,376,243 + TX73_006445 0.84 +0.8
1,376,256 - TX73_006445 0.85 +0.6
1,376,276 + TX73_006445 0.87 -0.4
1,376,319 + +0.4
1,376,588 + -0.3
1,376,716 - TX73_006450 0.26 +0.5
1,376,808 - TX73_006450 0.52 +0.4
1,376,821 - TX73_006450 0.56 -0.1
1,376,843 + TX73_006450 0.62 +0.0
1,376,891 - TX73_006450 0.76 +0.8
1,376,969 - +0.0
1,376,981 - -0.7
1,376,981 - +0.4
1,377,001 + -0.9
1,377,067 - -0.8
1,377,735 - TX73_006455 0.81 +2.5
1,377,758 + TX73_006455 0.84 -0.7
1,377,763 + TX73_006455 0.85 +0.1
1,377,869 + -0.7
1,377,904 + +1.2
1,377,904 + -0.0
1,377,912 - -0.2
1,377,912 - -0.5
1,377,912 - -0.1
1,377,919 + +0.1
1,377,932 + +0.1
1,377,953 + -0.3

Or see this region's nucleotide sequence