Experiment: ethyl methyl sulfide sulfur source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_002970 and TX73_002975 overlap by 4 nucleotides TX73_002975 and TX73_002980 are separated by 138 nucleotides TX73_002980 and TX73_002985 are separated by 256 nucleotides
TX73_002970: TX73_002970 - ABC transporter ATP-binding protein, at 635,656 to 636,453
_002970
TX73_002975: TX73_002975 - ABC transporter permease, at 636,450 to 637,280
_002975
TX73_002980: TX73_002980 - polyhydroxyalkanoate depolymerase, at 637,419 to 638,747
_002980
TX73_002985: TX73_002985 - SprT family zinc-dependent metalloprotease, at 639,004 to 639,837
_002985
Position (kb) 637
638
639 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 636.440 kb on - strand at 636.450 kb on - strand at 636.489 kb on - strand at 636.519 kb on - strand at 636.529 kb on - strand at 636.569 kb on + strand, within TX73_002975 at 636.619 kb on + strand, within TX73_002975 at 636.768 kb on - strand, within TX73_002975 at 636.775 kb on + strand, within TX73_002975 at 636.775 kb on + strand, within TX73_002975 at 636.775 kb on + strand, within TX73_002975 at 636.809 kb on - strand, within TX73_002975 at 636.860 kb on + strand, within TX73_002975 at 636.862 kb on + strand, within TX73_002975 at 636.868 kb on - strand, within TX73_002975 at 636.885 kb on - strand, within TX73_002975 at 636.965 kb on - strand, within TX73_002975 at 637.001 kb on - strand, within TX73_002975 at 637.026 kb on + strand, within TX73_002975 at 637.032 kb on + strand, within TX73_002975 at 637.100 kb on + strand, within TX73_002975 at 637.115 kb on + strand, within TX73_002975 at 637.123 kb on - strand, within TX73_002975 at 637.199 kb on + strand at 637.202 kb on - strand at 637.230 kb on + strand at 637.238 kb on - strand at 637.295 kb on + strand at 637.295 kb on + strand at 637.295 kb on + strand at 637.295 kb on + strand at 637.297 kb on + strand at 637.297 kb on + strand at 637.297 kb on + strand at 637.303 kb on - strand at 637.303 kb on - strand at 637.371 kb on - strand at 637.371 kb on - strand at 637.384 kb on + strand at 637.405 kb on - strand at 637.405 kb on - strand at 637.405 kb on - strand at 637.407 kb on + strand at 637.407 kb on + strand at 637.407 kb on - strand at 637.414 kb on + strand at 637.454 kb on + strand at 637.477 kb on - strand at 637.479 kb on + strand at 637.479 kb on + strand at 637.487 kb on - strand at 637.491 kb on + strand at 637.496 kb on + strand at 637.526 kb on + strand at 637.534 kb on - strand at 637.579 kb on + strand, within TX73_002980 at 637.621 kb on - strand, within TX73_002980 at 637.643 kb on - strand, within TX73_002980 at 637.644 kb on - strand, within TX73_002980 at 637.702 kb on + strand, within TX73_002980 at 637.745 kb on + strand, within TX73_002980 at 637.750 kb on + strand, within TX73_002980 at 637.757 kb on + strand, within TX73_002980 at 637.840 kb on + strand, within TX73_002980 at 637.856 kb on - strand, within TX73_002980 at 637.861 kb on - strand, within TX73_002980 at 637.882 kb on + strand, within TX73_002980 at 637.889 kb on + strand, within TX73_002980 at 637.890 kb on + strand, within TX73_002980 at 637.890 kb on + strand, within TX73_002980 at 637.894 kb on + strand, within TX73_002980 at 637.898 kb on - strand, within TX73_002980 at 637.942 kb on + strand, within TX73_002980 at 637.983 kb on - strand, within TX73_002980 at 638.010 kb on - strand, within TX73_002980 at 638.101 kb on - strand, within TX73_002980 at 638.147 kb on + strand, within TX73_002980 at 638.155 kb on - strand, within TX73_002980 at 638.160 kb on + strand, within TX73_002980 at 638.160 kb on + strand, within TX73_002980 at 638.192 kb on + strand, within TX73_002980 at 638.236 kb on + strand, within TX73_002980 at 638.291 kb on + strand, within TX73_002980 at 638.291 kb on + strand, within TX73_002980 at 638.291 kb on + strand, within TX73_002980 at 638.336 kb on - strand, within TX73_002980 at 638.388 kb on - strand, within TX73_002980 at 638.453 kb on + strand, within TX73_002980 at 638.453 kb on + strand, within TX73_002980 at 638.453 kb on + strand, within TX73_002980 at 638.459 kb on - strand, within TX73_002980 at 638.495 kb on + strand, within TX73_002980 at 638.495 kb on + strand, within TX73_002980 at 638.495 kb on + strand, within TX73_002980 at 638.495 kb on + strand, within TX73_002980 at 638.495 kb on + strand, within TX73_002980 at 638.495 kb on + strand, within TX73_002980 at 638.503 kb on - strand, within TX73_002980 at 638.503 kb on - strand, within TX73_002980 at 638.509 kb on - strand, within TX73_002980 at 638.527 kb on - strand, within TX73_002980 at 638.548 kb on - strand, within TX73_002980 at 638.548 kb on - strand, within TX73_002980 at 638.567 kb on - strand, within TX73_002980 at 638.572 kb on - strand, within TX73_002980 at 638.572 kb on - strand, within TX73_002980 at 638.581 kb on + strand, within TX73_002980 at 638.581 kb on + strand, within TX73_002980 at 638.640 kb on - strand at 638.642 kb on - strand at 638.651 kb on + strand at 638.651 kb on + strand at 638.651 kb on + strand at 638.651 kb on + strand at 638.651 kb on + strand at 638.657 kb on - strand at 638.657 kb on - strand at 638.659 kb on - strand at 638.659 kb on - strand at 638.746 kb on + strand at 638.768 kb on - strand at 638.778 kb on + strand at 638.795 kb on - strand at 639.056 kb on + strand at 639.072 kb on + strand at 639.077 kb on + strand at 639.079 kb on + strand at 639.080 kb on + strand at 639.085 kb on + strand at 639.085 kb on + strand at 639.088 kb on - strand, within TX73_002985 at 639.093 kb on - strand, within TX73_002985 at 639.108 kb on - strand, within TX73_002985 at 639.108 kb on - strand, within TX73_002985 at 639.108 kb on - strand, within TX73_002985 at 639.108 kb on - strand, within TX73_002985 at 639.111 kb on + strand, within TX73_002985 at 639.116 kb on + strand, within TX73_002985 at 639.116 kb on + strand, within TX73_002985 at 639.116 kb on + strand, within TX73_002985 at 639.123 kb on + strand, within TX73_002985 at 639.131 kb on - strand, within TX73_002985 at 639.134 kb on + strand, within TX73_002985 at 639.137 kb on - strand, within TX73_002985 at 639.142 kb on - strand, within TX73_002985 at 639.164 kb on - strand, within TX73_002985 at 639.166 kb on - strand, within TX73_002985 at 639.170 kb on + strand, within TX73_002985 at 639.195 kb on + strand, within TX73_002985 at 639.195 kb on + strand, within TX73_002985 at 639.195 kb on + strand, within TX73_002985 at 639.195 kb on + strand, within TX73_002985 at 639.195 kb on + strand, within TX73_002985 at 639.195 kb on + strand, within TX73_002985 at 639.195 kb on + strand, within TX73_002985 at 639.195 kb on + strand, within TX73_002985 at 639.195 kb on + strand, within TX73_002985 at 639.195 kb on + strand, within TX73_002985 at 639.195 kb on + strand, within TX73_002985 at 639.203 kb on - strand, within TX73_002985 at 639.203 kb on - strand, within TX73_002985 at 639.203 kb on - strand, within TX73_002985 at 639.203 kb on - strand, within TX73_002985 at 639.203 kb on - strand, within TX73_002985 at 639.203 kb on - strand, within TX73_002985 at 639.203 kb on - strand, within TX73_002985 at 639.235 kb on + strand, within TX73_002985 at 639.267 kb on - strand, within TX73_002985 at 639.288 kb on + strand, within TX73_002985 at 639.288 kb on + strand, within TX73_002985 at 639.296 kb on - strand, within TX73_002985 at 639.296 kb on - strand, within TX73_002985 at 639.298 kb on + strand, within TX73_002985 at 639.313 kb on + strand, within TX73_002985 at 639.342 kb on + strand, within TX73_002985 at 639.348 kb on + strand, within TX73_002985 at 639.348 kb on + strand, within TX73_002985 at 639.353 kb on + strand, within TX73_002985 at 639.356 kb on + strand, within TX73_002985 at 639.361 kb on + strand, within TX73_002985 at 639.364 kb on - strand, within TX73_002985 at 639.374 kb on + strand, within TX73_002985 at 639.389 kb on - strand, within TX73_002985 at 639.389 kb on - strand, within TX73_002985 at 639.415 kb on + strand, within TX73_002985 at 639.423 kb on - strand, within TX73_002985 at 639.423 kb on - strand, within TX73_002985 at 639.425 kb on - strand, within TX73_002985 at 639.427 kb on + strand, within TX73_002985 at 639.486 kb on - strand, within TX73_002985 at 639.506 kb on + strand, within TX73_002985 at 639.525 kb on + strand, within TX73_002985 at 639.533 kb on - strand, within TX73_002985 at 639.533 kb on - strand, within TX73_002985 at 639.563 kb on + strand, within TX73_002985 at 639.563 kb on + strand, within TX73_002985 at 639.572 kb on - strand, within TX73_002985 at 639.605 kb on + strand, within TX73_002985 at 639.605 kb on + strand, within TX73_002985 at 639.610 kb on + strand, within TX73_002985 at 639.612 kb on + strand, within TX73_002985 at 639.613 kb on - strand, within TX73_002985 at 639.666 kb on + strand, within TX73_002985 at 639.673 kb on - strand, within TX73_002985 at 639.699 kb on - strand, within TX73_002985 at 639.730 kb on + strand, within TX73_002985 at 639.735 kb on + strand, within TX73_002985 at 639.735 kb on + strand, within TX73_002985 at 639.735 kb on + strand, within TX73_002985 at 639.735 kb on + strand, within TX73_002985 at 639.735 kb on + strand, within TX73_002985 at 639.738 kb on - strand, within TX73_002985 at 639.743 kb on - strand, within TX73_002985 at 639.743 kb on - strand, within TX73_002985
Per-strain Table
Position Strand Gene LocusTag Fraction ethyl methyl sulfide sulfur source remove 636,440 - +0.3 636,450 - -0.0 636,489 - +0.6 636,519 - -1.5 636,529 - -0.4 636,569 + TX73_002975 0.14 +0.7 636,619 + TX73_002975 0.20 +0.4 636,768 - TX73_002975 0.38 -0.0 636,775 + TX73_002975 0.39 -0.3 636,775 + TX73_002975 0.39 -0.1 636,775 + TX73_002975 0.39 +0.3 636,809 - TX73_002975 0.43 +0.4 636,860 + TX73_002975 0.49 -0.3 636,862 + TX73_002975 0.50 -0.2 636,868 - TX73_002975 0.50 +0.9 636,885 - TX73_002975 0.52 +0.2 636,965 - TX73_002975 0.62 +0.4 637,001 - TX73_002975 0.66 -0.3 637,026 + TX73_002975 0.69 +0.3 637,032 + TX73_002975 0.70 +0.0 637,100 + TX73_002975 0.78 -0.3 637,115 + TX73_002975 0.80 -0.9 637,123 - TX73_002975 0.81 -0.6 637,199 + -0.5 637,202 - -0.4 637,230 + +0.6 637,238 - -0.1 637,295 + +0.4 637,295 + -0.2 637,295 + +0.3 637,295 + +0.4 637,297 + +0.0 637,297 + -0.1 637,297 + -0.2 637,303 - -0.3 637,303 - +0.7 637,371 - +0.8 637,371 - -0.0 637,384 + -0.5 637,405 - +0.4 637,405 - -0.9 637,405 - +0.2 637,407 + -0.3 637,407 + +0.3 637,407 - +0.1 637,414 + -0.4 637,454 + -0.1 637,477 - -0.5 637,479 + +0.1 637,479 + -0.2 637,487 - +0.5 637,491 + -0.8 637,496 + +0.7 637,526 + -1.3 637,534 - -0.7 637,579 + TX73_002980 0.12 -2.3 637,621 - TX73_002980 0.15 -0.9 637,643 - TX73_002980 0.17 -0.3 637,644 - TX73_002980 0.17 -0.7 637,702 + TX73_002980 0.21 -0.4 637,745 + TX73_002980 0.25 -0.8 637,750 + TX73_002980 0.25 -1.0 637,757 + TX73_002980 0.25 -0.4 637,840 + TX73_002980 0.32 +0.2 637,856 - TX73_002980 0.33 -1.4 637,861 - TX73_002980 0.33 -0.2 637,882 + TX73_002980 0.35 -0.6 637,889 + TX73_002980 0.35 +0.2 637,890 + TX73_002980 0.35 +0.0 637,890 + TX73_002980 0.35 +0.3 637,894 + TX73_002980 0.36 -1.2 637,898 - TX73_002980 0.36 -0.2 637,942 + TX73_002980 0.39 -0.6 637,983 - TX73_002980 0.42 -0.4 638,010 - TX73_002980 0.44 -0.2 638,101 - TX73_002980 0.51 -0.3 638,147 + TX73_002980 0.55 +0.4 638,155 - TX73_002980 0.55 -1.5 638,160 + TX73_002980 0.56 -2.0 638,160 + TX73_002980 0.56 -0.2 638,192 + TX73_002980 0.58 -0.9 638,236 + TX73_002980 0.61 -1.2 638,291 + TX73_002980 0.66 -0.6 638,291 + TX73_002980 0.66 -1.5 638,291 + TX73_002980 0.66 -0.2 638,336 - TX73_002980 0.69 -0.4 638,388 - TX73_002980 0.73 -0.7 638,453 + TX73_002980 0.78 -0.2 638,453 + TX73_002980 0.78 -0.9 638,453 + TX73_002980 0.78 -0.9 638,459 - TX73_002980 0.78 -0.3 638,495 + TX73_002980 0.81 -0.5 638,495 + TX73_002980 0.81 -0.4 638,495 + TX73_002980 0.81 -1.0 638,495 + TX73_002980 0.81 -0.9 638,495 + TX73_002980 0.81 -0.2 638,495 + TX73_002980 0.81 +0.0 638,503 - TX73_002980 0.82 -1.5 638,503 - TX73_002980 0.82 -0.8 638,509 - TX73_002980 0.82 -1.5 638,527 - TX73_002980 0.83 -0.7 638,548 - TX73_002980 0.85 +0.3 638,548 - TX73_002980 0.85 -0.7 638,567 - TX73_002980 0.86 -1.1 638,572 - TX73_002980 0.87 -0.8 638,572 - TX73_002980 0.87 -1.7 638,581 + TX73_002980 0.87 -0.6 638,581 + TX73_002980 0.87 -1.0 638,640 - -1.1 638,642 - -0.8 638,651 + -0.6 638,651 + -0.3 638,651 + -1.2 638,651 + -0.5 638,651 + -0.7 638,657 - -0.2 638,657 - -0.9 638,659 - -0.6 638,659 - -1.3 638,746 + +0.0 638,768 - -0.4 638,778 + +0.2 638,795 - -0.6 639,056 + -0.0 639,072 + +0.2 639,077 + -0.1 639,079 + +0.3 639,080 + +0.3 639,085 + -0.9 639,085 + -0.5 639,088 - TX73_002985 0.10 +0.2 639,093 - TX73_002985 0.11 -0.6 639,108 - TX73_002985 0.12 +0.5 639,108 - TX73_002985 0.12 +0.4 639,108 - TX73_002985 0.12 -0.0 639,108 - TX73_002985 0.12 -0.5 639,111 + TX73_002985 0.13 -0.1 639,116 + TX73_002985 0.13 -0.2 639,116 + TX73_002985 0.13 -0.2 639,116 + TX73_002985 0.13 -0.1 639,123 + TX73_002985 0.14 -0.4 639,131 - TX73_002985 0.15 +0.8 639,134 + TX73_002985 0.16 +0.0 639,137 - TX73_002985 0.16 -0.6 639,142 - TX73_002985 0.17 -0.3 639,164 - TX73_002985 0.19 -0.0 639,166 - TX73_002985 0.19 +0.6 639,170 + TX73_002985 0.20 -0.3 639,195 + TX73_002985 0.23 +0.3 639,195 + TX73_002985 0.23 -0.3 639,195 + TX73_002985 0.23 +0.3 639,195 + TX73_002985 0.23 -0.4 639,195 + TX73_002985 0.23 +0.5 639,195 + TX73_002985 0.23 +0.3 639,195 + TX73_002985 0.23 +0.4 639,195 + TX73_002985 0.23 -0.1 639,195 + TX73_002985 0.23 -0.9 639,195 + TX73_002985 0.23 +0.3 639,195 + TX73_002985 0.23 -2.9 639,203 - TX73_002985 0.24 -0.1 639,203 - TX73_002985 0.24 -0.6 639,203 - TX73_002985 0.24 +0.3 639,203 - TX73_002985 0.24 -0.2 639,203 - TX73_002985 0.24 -0.5 639,203 - TX73_002985 0.24 -1.3 639,203 - TX73_002985 0.24 +0.1 639,235 + TX73_002985 0.28 +1.2 639,267 - TX73_002985 0.32 -1.9 639,288 + TX73_002985 0.34 +0.2 639,288 + TX73_002985 0.34 +0.6 639,296 - TX73_002985 0.35 -0.5 639,296 - TX73_002985 0.35 +1.0 639,298 + TX73_002985 0.35 -0.5 639,313 + TX73_002985 0.37 +1.7 639,342 + TX73_002985 0.41 -0.5 639,348 + TX73_002985 0.41 +0.2 639,348 + TX73_002985 0.41 +0.0 639,353 + TX73_002985 0.42 +0.1 639,356 + TX73_002985 0.42 -1.1 639,361 + TX73_002985 0.43 -0.5 639,364 - TX73_002985 0.43 +0.4 639,374 + TX73_002985 0.44 -0.4 639,389 - TX73_002985 0.46 +0.2 639,389 - TX73_002985 0.46 -0.1 639,415 + TX73_002985 0.49 -0.5 639,423 - TX73_002985 0.50 -0.2 639,423 - TX73_002985 0.50 -0.9 639,425 - TX73_002985 0.50 +0.3 639,427 + TX73_002985 0.51 +1.0 639,486 - TX73_002985 0.58 -0.4 639,506 + TX73_002985 0.60 +0.2 639,525 + TX73_002985 0.62 -1.4 639,533 - TX73_002985 0.63 +0.5 639,533 - TX73_002985 0.63 -0.3 639,563 + TX73_002985 0.67 -0.0 639,563 + TX73_002985 0.67 +1.1 639,572 - TX73_002985 0.68 +0.4 639,605 + TX73_002985 0.72 -1.4 639,605 + TX73_002985 0.72 +0.2 639,610 + TX73_002985 0.73 -1.9 639,612 + TX73_002985 0.73 -0.2 639,613 - TX73_002985 0.73 +0.1 639,666 + TX73_002985 0.79 -0.9 639,673 - TX73_002985 0.80 -0.3 639,699 - TX73_002985 0.83 -0.1 639,730 + TX73_002985 0.87 -0.9 639,735 + TX73_002985 0.88 -0.5 639,735 + TX73_002985 0.88 +0.9 639,735 + TX73_002985 0.88 +0.7 639,735 + TX73_002985 0.88 +0.5 639,735 + TX73_002985 0.88 +0.3 639,738 - TX73_002985 0.88 +0.1 639,743 - TX73_002985 0.89 -0.8 639,743 - TX73_002985 0.89 -0.8
Or see this region's nucleotide sequence