Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_018985

Experiment: 2-(Methylthio)ethanol sulfur source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_018975 and TX73_018980 overlap by 1 nucleotidesTX73_018980 and TX73_018985 are separated by 161 nucleotidesTX73_018985 and TX73_018990 are separated by 46 nucleotides TX73_018970: TX73_018970 - urease subunit alpha, at 4,133,318 to 4,135,030 _018970 TX73_018975: TX73_018975 - HD domain-containing protein, at 4,135,027 to 4,135,563 _018975 TX73_018980: TX73_018980 - urease subunit beta, at 4,135,563 to 4,135,868 _018980 TX73_018985: TX73_018985 - urease subunit gamma, at 4,136,030 to 4,136,332 _018985 TX73_018990: TX73_018990 - urease accessory protein UreD, at 4,136,379 to 4,137,215 _018990 Position (kb) 4136 4137Strain fitness (log2 ratio) -2 -1 0 1 2at 4135.030 kb on + strandat 4135.030 kb on + strandat 4135.035 kb on + strandat 4135.208 kb on + strand, within TX73_018975at 4135.216 kb on - strand, within TX73_018975at 4135.253 kb on + strand, within TX73_018975at 4135.261 kb on - strand, within TX73_018975at 4135.274 kb on + strand, within TX73_018975at 4135.274 kb on + strand, within TX73_018975at 4135.282 kb on - strand, within TX73_018975at 4135.294 kb on - strand, within TX73_018975at 4135.306 kb on - strand, within TX73_018975at 4135.315 kb on - strand, within TX73_018975at 4135.336 kb on - strand, within TX73_018975at 4135.379 kb on - strand, within TX73_018975at 4135.441 kb on - strand, within TX73_018975at 4135.477 kb on - strand, within TX73_018975at 4135.566 kb on - strandat 4135.601 kb on - strand, within TX73_018980at 4135.601 kb on - strand, within TX73_018980at 4135.641 kb on + strand, within TX73_018980at 4135.649 kb on - strand, within TX73_018980at 4135.664 kb on + strand, within TX73_018980at 4135.664 kb on + strand, within TX73_018980at 4135.672 kb on - strand, within TX73_018980at 4135.689 kb on - strand, within TX73_018980at 4135.761 kb on + strand, within TX73_018980at 4135.762 kb on + strand, within TX73_018980at 4135.769 kb on - strand, within TX73_018980at 4135.793 kb on - strand, within TX73_018980at 4135.843 kb on + strandat 4135.859 kb on - strandat 4135.910 kb on - strandat 4135.956 kb on + strandat 4135.989 kb on + strandat 4135.997 kb on - strandat 4135.997 kb on - strandat 4136.060 kb on - strandat 4136.067 kb on - strand, within TX73_018985at 4136.069 kb on + strand, within TX73_018985at 4136.089 kb on - strand, within TX73_018985at 4136.131 kb on + strand, within TX73_018985at 4136.131 kb on + strand, within TX73_018985at 4136.229 kb on + strand, within TX73_018985at 4136.309 kb on - strandat 4136.429 kb on - strandat 4136.433 kb on + strandat 4136.501 kb on + strand, within TX73_018990at 4136.536 kb on + strand, within TX73_018990at 4136.572 kb on + strand, within TX73_018990at 4136.590 kb on - strand, within TX73_018990at 4136.607 kb on + strand, within TX73_018990at 4136.607 kb on + strand, within TX73_018990at 4136.613 kb on - strand, within TX73_018990at 4136.660 kb on - strand, within TX73_018990at 4136.731 kb on + strand, within TX73_018990at 4136.731 kb on + strand, within TX73_018990at 4136.739 kb on - strand, within TX73_018990at 4136.780 kb on + strand, within TX73_018990at 4136.780 kb on + strand, within TX73_018990at 4136.829 kb on - strand, within TX73_018990at 4136.884 kb on + strand, within TX73_018990at 4136.904 kb on - strand, within TX73_018990at 4136.933 kb on - strand, within TX73_018990at 4136.973 kb on + strand, within TX73_018990at 4136.981 kb on + strand, within TX73_018990at 4136.981 kb on - strand, within TX73_018990at 4137.036 kb on - strand, within TX73_018990at 4137.051 kb on - strand, within TX73_018990at 4137.051 kb on - strand, within TX73_018990at 4137.051 kb on - strand, within TX73_018990at 4137.051 kb on - strand, within TX73_018990at 4137.059 kb on + strand, within TX73_018990at 4137.097 kb on - strand, within TX73_018990at 4137.146 kb on - strandat 4137.180 kb on + strandat 4137.205 kb on - strandat 4137.208 kb on + strandat 4137.265 kb on - strandat 4137.313 kb on - strandat 4137.330 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-(Methylthio)ethanol sulfur source
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4,135,030 + -0.4
4,135,030 + +0.2
4,135,035 + -0.9
4,135,208 + TX73_018975 0.34 -0.3
4,135,216 - TX73_018975 0.35 +0.6
4,135,253 + TX73_018975 0.42 -0.4
4,135,261 - TX73_018975 0.44 -0.8
4,135,274 + TX73_018975 0.46 -0.8
4,135,274 + TX73_018975 0.46 +1.6
4,135,282 - TX73_018975 0.47 -0.2
4,135,294 - TX73_018975 0.50 +0.6
4,135,306 - TX73_018975 0.52 +0.3
4,135,315 - TX73_018975 0.54 +0.2
4,135,336 - TX73_018975 0.58 +0.1
4,135,379 - TX73_018975 0.66 -0.9
4,135,441 - TX73_018975 0.77 -0.5
4,135,477 - TX73_018975 0.84 +0.4
4,135,566 - +0.2
4,135,601 - TX73_018980 0.12 +0.1
4,135,601 - TX73_018980 0.12 +0.0
4,135,641 + TX73_018980 0.25 -0.6
4,135,649 - TX73_018980 0.28 -0.7
4,135,664 + TX73_018980 0.33 -0.1
4,135,664 + TX73_018980 0.33 +0.2
4,135,672 - TX73_018980 0.36 +0.7
4,135,689 - TX73_018980 0.41 +0.1
4,135,761 + TX73_018980 0.65 +0.2
4,135,762 + TX73_018980 0.65 +0.6
4,135,769 - TX73_018980 0.67 +0.4
4,135,793 - TX73_018980 0.75 -0.3
4,135,843 + -0.1
4,135,859 - -0.5
4,135,910 - -0.6
4,135,956 + -0.4
4,135,989 + +0.1
4,135,997 - -0.1
4,135,997 - -0.4
4,136,060 - +0.3
4,136,067 - TX73_018985 0.12 +1.2
4,136,069 + TX73_018985 0.13 +0.3
4,136,089 - TX73_018985 0.19 -0.0
4,136,131 + TX73_018985 0.33 -0.1
4,136,131 + TX73_018985 0.33 +0.5
4,136,229 + TX73_018985 0.66 +0.7
4,136,309 - +1.1
4,136,429 - +0.5
4,136,433 + +0.0
4,136,501 + TX73_018990 0.15 +0.3
4,136,536 + TX73_018990 0.19 -0.1
4,136,572 + TX73_018990 0.23 -0.0
4,136,590 - TX73_018990 0.25 -0.6
4,136,607 + TX73_018990 0.27 -0.4
4,136,607 + TX73_018990 0.27 -0.1
4,136,613 - TX73_018990 0.28 +2.0
4,136,660 - TX73_018990 0.34 -0.4
4,136,731 + TX73_018990 0.42 +0.3
4,136,731 + TX73_018990 0.42 -0.4
4,136,739 - TX73_018990 0.43 +0.7
4,136,780 + TX73_018990 0.48 +0.6
4,136,780 + TX73_018990 0.48 +0.3
4,136,829 - TX73_018990 0.54 +0.2
4,136,884 + TX73_018990 0.60 -0.2
4,136,904 - TX73_018990 0.63 +0.0
4,136,933 - TX73_018990 0.66 +1.3
4,136,973 + TX73_018990 0.71 -0.1
4,136,981 + TX73_018990 0.72 -0.3
4,136,981 - TX73_018990 0.72 -0.9
4,137,036 - TX73_018990 0.78 +0.8
4,137,051 - TX73_018990 0.80 -0.8
4,137,051 - TX73_018990 0.80 -2.3
4,137,051 - TX73_018990 0.80 -0.5
4,137,051 - TX73_018990 0.80 +0.0
4,137,059 + TX73_018990 0.81 -0.6
4,137,097 - TX73_018990 0.86 -0.8
4,137,146 - +0.1
4,137,180 + +0.7
4,137,205 - +0.1
4,137,208 + -0.0
4,137,265 - +0.2
4,137,313 - +0.2
4,137,330 + +0.1

Or see this region's nucleotide sequence