Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_023835

Experiment: 2-(Methylthio)ethanol sulfur source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_023825 and TX73_023830 are separated by 17 nucleotidesTX73_023830 and TX73_023835 are separated by 253 nucleotidesTX73_023835 and TX73_023840 are separated by 68 nucleotides TX73_023825: TX73_023825 - hypothetical protein, at 5,171,111 to 5,172,640 _023825 TX73_023830: TX73_023830 - hypothetical protein, at 5,172,658 to 5,173,023 _023830 TX73_023835: TX73_023835 - lipopolysaccharide biosynthesis protein, at 5,173,277 to 5,174,635 _023835 TX73_023840: TX73_023840 - homoserine O-succinyltransferase, at 5,174,704 to 5,175,705 _023840 Position (kb) 5173 5174 5175Strain fitness (log2 ratio) -3 -2 -1 0 1at 5172.283 kb on + strand, within TX73_023825at 5172.317 kb on + strand, within TX73_023825at 5172.317 kb on + strand, within TX73_023825at 5172.326 kb on - strand, within TX73_023825at 5172.342 kb on + strand, within TX73_023825at 5172.376 kb on + strand, within TX73_023825at 5172.379 kb on - strand, within TX73_023825at 5172.389 kb on + strand, within TX73_023825at 5172.389 kb on + strand, within TX73_023825at 5172.389 kb on + strand, within TX73_023825at 5172.389 kb on + strand, within TX73_023825at 5172.389 kb on + strand, within TX73_023825at 5172.389 kb on + strand, within TX73_023825at 5172.389 kb on + strand, within TX73_023825at 5172.397 kb on - strand, within TX73_023825at 5172.397 kb on - strand, within TX73_023825at 5172.397 kb on - strand, within TX73_023825at 5172.397 kb on - strand, within TX73_023825at 5172.397 kb on - strand, within TX73_023825at 5172.397 kb on - strand, within TX73_023825at 5172.397 kb on - strand, within TX73_023825at 5172.397 kb on - strand, within TX73_023825at 5172.402 kb on - strand, within TX73_023825at 5172.402 kb on - strand, within TX73_023825at 5172.408 kb on + strand, within TX73_023825at 5172.414 kb on - strand, within TX73_023825at 5172.416 kb on - strand, within TX73_023825at 5172.419 kb on + strand, within TX73_023825at 5172.427 kb on - strand, within TX73_023825at 5172.428 kb on - strand, within TX73_023825at 5172.473 kb on + strand, within TX73_023825at 5172.478 kb on - strand, within TX73_023825at 5172.478 kb on - strand, within TX73_023825at 5172.480 kb on + strand, within TX73_023825at 5172.484 kb on + strand, within TX73_023825at 5172.489 kb on + strandat 5172.489 kb on + strandat 5172.489 kb on + strandat 5172.489 kb on + strandat 5172.489 kb on + strandat 5172.492 kb on - strandat 5172.492 kb on - strandat 5172.497 kb on - strandat 5172.499 kb on + strandat 5172.499 kb on + strandat 5172.507 kb on - strandat 5172.517 kb on + strandat 5172.517 kb on + strandat 5172.518 kb on - strandat 5172.533 kb on - strandat 5172.535 kb on - strandat 5172.543 kb on + strandat 5172.551 kb on - strandat 5172.562 kb on - strandat 5172.641 kb on + strandat 5172.722 kb on + strand, within TX73_023830at 5172.778 kb on - strand, within TX73_023830at 5172.779 kb on + strand, within TX73_023830at 5172.787 kb on - strand, within TX73_023830at 5172.795 kb on - strand, within TX73_023830at 5172.800 kb on - strand, within TX73_023830at 5172.807 kb on + strand, within TX73_023830at 5172.816 kb on - strand, within TX73_023830at 5172.909 kb on - strand, within TX73_023830at 5172.929 kb on + strand, within TX73_023830at 5172.954 kb on + strand, within TX73_023830at 5172.954 kb on + strand, within TX73_023830at 5172.964 kb on + strand, within TX73_023830at 5172.974 kb on - strand, within TX73_023830at 5172.985 kb on - strand, within TX73_023830at 5172.987 kb on + strandat 5173.008 kb on + strandat 5173.050 kb on - strandat 5173.053 kb on + strandat 5173.077 kb on - strandat 5173.096 kb on + strandat 5173.104 kb on - strandat 5173.133 kb on - strandat 5173.151 kb on + strandat 5173.201 kb on + strandat 5173.208 kb on - strandat 5173.243 kb on - strandat 5173.255 kb on + strandat 5173.373 kb on - strandat 5173.375 kb on + strandat 5173.390 kb on + strandat 5173.407 kb on - strandat 5173.451 kb on + strand, within TX73_023835at 5173.459 kb on - strand, within TX73_023835at 5173.464 kb on - strand, within TX73_023835at 5173.477 kb on - strand, within TX73_023835at 5173.477 kb on - strand, within TX73_023835at 5173.484 kb on + strand, within TX73_023835at 5173.491 kb on + strand, within TX73_023835at 5173.512 kb on - strand, within TX73_023835at 5173.537 kb on - strand, within TX73_023835at 5173.537 kb on - strand, within TX73_023835at 5173.584 kb on - strand, within TX73_023835at 5173.681 kb on + strand, within TX73_023835at 5173.767 kb on + strand, within TX73_023835at 5173.772 kb on - strand, within TX73_023835at 5173.811 kb on + strand, within TX73_023835at 5173.859 kb on + strand, within TX73_023835at 5173.886 kb on + strand, within TX73_023835at 5173.946 kb on + strand, within TX73_023835at 5173.966 kb on + strand, within TX73_023835at 5173.968 kb on + strand, within TX73_023835at 5173.968 kb on + strand, within TX73_023835at 5173.997 kb on + strand, within TX73_023835at 5174.005 kb on - strand, within TX73_023835at 5174.007 kb on + strand, within TX73_023835at 5174.061 kb on + strand, within TX73_023835at 5174.140 kb on - strand, within TX73_023835at 5174.140 kb on - strand, within TX73_023835at 5174.155 kb on - strand, within TX73_023835at 5174.157 kb on + strand, within TX73_023835at 5174.163 kb on - strand, within TX73_023835at 5174.167 kb on + strand, within TX73_023835at 5174.175 kb on - strand, within TX73_023835at 5174.211 kb on - strand, within TX73_023835at 5174.260 kb on + strand, within TX73_023835at 5174.311 kb on + strand, within TX73_023835at 5174.314 kb on + strand, within TX73_023835at 5174.319 kb on - strand, within TX73_023835at 5174.405 kb on - strand, within TX73_023835at 5174.435 kb on + strand, within TX73_023835at 5174.435 kb on + strand, within TX73_023835at 5174.435 kb on + strand, within TX73_023835at 5174.435 kb on + strand, within TX73_023835at 5174.435 kb on + strand, within TX73_023835at 5174.435 kb on + strand, within TX73_023835at 5174.435 kb on + strand, within TX73_023835at 5174.435 kb on + strand, within TX73_023835at 5174.435 kb on + strand, within TX73_023835at 5174.443 kb on - strand, within TX73_023835at 5174.443 kb on - strand, within TX73_023835at 5174.458 kb on - strand, within TX73_023835at 5174.493 kb on - strand, within TX73_023835at 5174.616 kb on - strandat 5174.702 kb on + strandat 5174.702 kb on + strandat 5174.710 kb on - strandat 5174.724 kb on + strandat 5174.781 kb on - strandat 5174.781 kb on - strandat 5174.901 kb on + strand, within TX73_023840at 5174.967 kb on + strand, within TX73_023840at 5175.013 kb on + strand, within TX73_023840at 5175.036 kb on - strand, within TX73_023840at 5175.061 kb on + strand, within TX73_023840at 5175.061 kb on + strand, within TX73_023840at 5175.083 kb on + strand, within TX73_023840at 5175.091 kb on - strand, within TX73_023840at 5175.122 kb on + strand, within TX73_023840at 5175.151 kb on + strand, within TX73_023840at 5175.185 kb on + strand, within TX73_023840at 5175.185 kb on + strand, within TX73_023840at 5175.188 kb on - strand, within TX73_023840at 5175.193 kb on - strand, within TX73_023840at 5175.193 kb on - strand, within TX73_023840at 5175.193 kb on - strand, within TX73_023840at 5175.193 kb on - strand, within TX73_023840at 5175.194 kb on + strand, within TX73_023840at 5175.220 kb on + strand, within TX73_023840at 5175.221 kb on - strand, within TX73_023840at 5175.222 kb on + strand, within TX73_023840at 5175.223 kb on - strand, within TX73_023840at 5175.230 kb on - strand, within TX73_023840at 5175.246 kb on - strand, within TX73_023840at 5175.263 kb on + strand, within TX73_023840at 5175.268 kb on + strand, within TX73_023840at 5175.361 kb on - strand, within TX73_023840at 5175.363 kb on + strand, within TX73_023840at 5175.371 kb on - strand, within TX73_023840at 5175.371 kb on - strand, within TX73_023840at 5175.422 kb on + strand, within TX73_023840at 5175.472 kb on - strand, within TX73_023840at 5175.477 kb on + strand, within TX73_023840at 5175.482 kb on + strand, within TX73_023840at 5175.490 kb on + strand, within TX73_023840at 5175.558 kb on + strand, within TX73_023840at 5175.590 kb on + strand, within TX73_023840at 5175.600 kb on + strand, within TX73_023840at 5175.618 kb on + strandat 5175.627 kb on + strandat 5175.631 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-(Methylthio)ethanol sulfur source
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5,172,283 + TX73_023825 0.77 +0.9
5,172,317 + TX73_023825 0.79 +0.3
5,172,317 + TX73_023825 0.79 +0.5
5,172,326 - TX73_023825 0.79 -2.1
5,172,342 + TX73_023825 0.80 -0.2
5,172,376 + TX73_023825 0.83 -0.3
5,172,379 - TX73_023825 0.83 +0.3
5,172,389 + TX73_023825 0.84 +0.2
5,172,389 + TX73_023825 0.84 -0.7
5,172,389 + TX73_023825 0.84 -0.1
5,172,389 + TX73_023825 0.84 +0.1
5,172,389 + TX73_023825 0.84 -0.2
5,172,389 + TX73_023825 0.84 +0.4
5,172,389 + TX73_023825 0.84 +0.5
5,172,397 - TX73_023825 0.84 +0.2
5,172,397 - TX73_023825 0.84 +0.4
5,172,397 - TX73_023825 0.84 -0.8
5,172,397 - TX73_023825 0.84 +0.5
5,172,397 - TX73_023825 0.84 +0.6
5,172,397 - TX73_023825 0.84 -0.6
5,172,397 - TX73_023825 0.84 -0.2
5,172,397 - TX73_023825 0.84 -0.8
5,172,402 - TX73_023825 0.84 -0.7
5,172,402 - TX73_023825 0.84 +0.3
5,172,408 + TX73_023825 0.85 -0.3
5,172,414 - TX73_023825 0.85 -0.1
5,172,416 - TX73_023825 0.85 +0.7
5,172,419 + TX73_023825 0.85 -0.3
5,172,427 - TX73_023825 0.86 -0.3
5,172,428 - TX73_023825 0.86 +0.2
5,172,473 + TX73_023825 0.89 -0.3
5,172,478 - TX73_023825 0.89 +0.4
5,172,478 - TX73_023825 0.89 +0.1
5,172,480 + TX73_023825 0.89 +1.0
5,172,484 + TX73_023825 0.90 +0.8
5,172,489 + +0.6
5,172,489 + +0.3
5,172,489 + +0.3
5,172,489 + -1.1
5,172,489 + -0.0
5,172,492 - +0.4
5,172,492 - -0.3
5,172,497 - +0.0
5,172,499 + +0.3
5,172,499 + -0.3
5,172,507 - +0.4
5,172,517 + +1.1
5,172,517 + +0.1
5,172,518 - +1.0
5,172,533 - -0.3
5,172,535 - +0.5
5,172,543 + -0.1
5,172,551 - +0.8
5,172,562 - +0.2
5,172,641 + +0.9
5,172,722 + TX73_023830 0.17 -0.7
5,172,778 - TX73_023830 0.33 +0.3
5,172,779 + TX73_023830 0.33 -0.2
5,172,787 - TX73_023830 0.35 +0.5
5,172,795 - TX73_023830 0.37 +0.5
5,172,800 - TX73_023830 0.39 +0.2
5,172,807 + TX73_023830 0.41 +0.3
5,172,816 - TX73_023830 0.43 +0.1
5,172,909 - TX73_023830 0.69 +0.1
5,172,929 + TX73_023830 0.74 -0.1
5,172,954 + TX73_023830 0.81 -0.5
5,172,954 + TX73_023830 0.81 -0.6
5,172,964 + TX73_023830 0.84 +0.3
5,172,974 - TX73_023830 0.86 -0.2
5,172,985 - TX73_023830 0.89 +0.0
5,172,987 + -0.6
5,173,008 + +1.0
5,173,050 - -0.4
5,173,053 + +0.2
5,173,077 - +0.2
5,173,096 + -0.3
5,173,104 - -0.2
5,173,133 - -0.7
5,173,151 + +1.1
5,173,201 + +0.5
5,173,208 - +1.0
5,173,243 - +0.5
5,173,255 + -0.3
5,173,373 - -2.9
5,173,375 + -0.3
5,173,390 + +0.5
5,173,407 - -1.9
5,173,451 + TX73_023835 0.13 -1.6
5,173,459 - TX73_023835 0.13 +0.5
5,173,464 - TX73_023835 0.14 -0.9
5,173,477 - TX73_023835 0.15 -1.6
5,173,477 - TX73_023835 0.15 -1.0
5,173,484 + TX73_023835 0.15 -1.3
5,173,491 + TX73_023835 0.16 -2.8
5,173,512 - TX73_023835 0.17 -1.5
5,173,537 - TX73_023835 0.19 +0.5
5,173,537 - TX73_023835 0.19 -0.7
5,173,584 - TX73_023835 0.23 +0.4
5,173,681 + TX73_023835 0.30 +0.7
5,173,767 + TX73_023835 0.36 -0.8
5,173,772 - TX73_023835 0.36 -0.8
5,173,811 + TX73_023835 0.39 +0.4
5,173,859 + TX73_023835 0.43 -1.5
5,173,886 + TX73_023835 0.45 -0.6
5,173,946 + TX73_023835 0.49 -2.7
5,173,966 + TX73_023835 0.51 -2.4
5,173,968 + TX73_023835 0.51 -0.5
5,173,968 + TX73_023835 0.51 -2.4
5,173,997 + TX73_023835 0.53 -2.7
5,174,005 - TX73_023835 0.54 -0.3
5,174,007 + TX73_023835 0.54 +0.3
5,174,061 + TX73_023835 0.58 -0.7
5,174,140 - TX73_023835 0.64 -1.2
5,174,140 - TX73_023835 0.64 +0.4
5,174,155 - TX73_023835 0.65 -0.1
5,174,157 + TX73_023835 0.65 -0.5
5,174,163 - TX73_023835 0.65 +0.2
5,174,167 + TX73_023835 0.65 -0.3
5,174,175 - TX73_023835 0.66 -0.8
5,174,211 - TX73_023835 0.69 -2.0
5,174,260 + TX73_023835 0.72 -0.7
5,174,311 + TX73_023835 0.76 -1.3
5,174,314 + TX73_023835 0.76 -1.2
5,174,319 - TX73_023835 0.77 -0.1
5,174,405 - TX73_023835 0.83 -0.9
5,174,435 + TX73_023835 0.85 -0.5
5,174,435 + TX73_023835 0.85 -1.2
5,174,435 + TX73_023835 0.85 +0.4
5,174,435 + TX73_023835 0.85 +1.7
5,174,435 + TX73_023835 0.85 -1.6
5,174,435 + TX73_023835 0.85 -0.4
5,174,435 + TX73_023835 0.85 -3.3
5,174,435 + TX73_023835 0.85 -2.6
5,174,435 + TX73_023835 0.85 -0.2
5,174,443 - TX73_023835 0.86 -1.2
5,174,443 - TX73_023835 0.86 +1.2
5,174,458 - TX73_023835 0.87 -0.8
5,174,493 - TX73_023835 0.89 -1.2
5,174,616 - +0.2
5,174,702 + +0.6
5,174,702 + +0.1
5,174,710 - +0.4
5,174,724 + +0.8
5,174,781 - +0.3
5,174,781 - +0.2
5,174,901 + TX73_023840 0.20 +0.0
5,174,967 + TX73_023840 0.26 +0.3
5,175,013 + TX73_023840 0.31 -0.6
5,175,036 - TX73_023840 0.33 +0.4
5,175,061 + TX73_023840 0.36 +0.2
5,175,061 + TX73_023840 0.36 +0.2
5,175,083 + TX73_023840 0.38 +0.4
5,175,091 - TX73_023840 0.39 +0.3
5,175,122 + TX73_023840 0.42 -0.8
5,175,151 + TX73_023840 0.45 +0.0
5,175,185 + TX73_023840 0.48 -0.2
5,175,185 + TX73_023840 0.48 -0.2
5,175,188 - TX73_023840 0.48 +0.1
5,175,193 - TX73_023840 0.49 +0.1
5,175,193 - TX73_023840 0.49 +0.5
5,175,193 - TX73_023840 0.49 +0.3
5,175,193 - TX73_023840 0.49 -0.5
5,175,194 + TX73_023840 0.49 +0.4
5,175,220 + TX73_023840 0.51 +0.5
5,175,221 - TX73_023840 0.52 -0.3
5,175,222 + TX73_023840 0.52 +0.1
5,175,223 - TX73_023840 0.52 +1.0
5,175,230 - TX73_023840 0.52 -0.2
5,175,246 - TX73_023840 0.54 +0.6
5,175,263 + TX73_023840 0.56 +0.3
5,175,268 + TX73_023840 0.56 +0.9
5,175,361 - TX73_023840 0.66 +0.5
5,175,363 + TX73_023840 0.66 +0.7
5,175,371 - TX73_023840 0.67 -0.5
5,175,371 - TX73_023840 0.67 -0.2
5,175,422 + TX73_023840 0.72 +0.3
5,175,472 - TX73_023840 0.77 -0.0
5,175,477 + TX73_023840 0.77 -0.3
5,175,482 + TX73_023840 0.78 -0.2
5,175,490 + TX73_023840 0.78 -1.1
5,175,558 + TX73_023840 0.85 -0.1
5,175,590 + TX73_023840 0.88 +0.0
5,175,600 + TX73_023840 0.89 +0.5
5,175,618 + -0.1
5,175,627 + -0.2
5,175,631 - -0.0

Or see this region's nucleotide sequence