Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_007215

Experiment: 2-(Methylthio)ethanol sulfur source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_007210 and TX73_007215 are separated by 2 nucleotidesTX73_007215 and TX73_007220 are separated by 2 nucleotidesTX73_007220 and TX73_007225 are separated by 38 nucleotides TX73_007210: TX73_007210 - urea carboxylase, at 1,553,494 to 1,557,042 _007210 TX73_007215: TX73_007215 - urea carboxylase-associated family protein, at 1,557,045 to 1,557,680 _007215 TX73_007220: TX73_007220 - urea carboxylase-associated family protein, at 1,557,683 to 1,558,522 _007220 TX73_007225: TX73_007225 - ABC transporter ATP-binding protein, at 1,558,561 to 1,559,352 _007225 Position (kb) 1557 1558Strain fitness (log2 ratio) -1 0 1at 1556.066 kb on + strand, within TX73_007210at 1556.071 kb on + strand, within TX73_007210at 1556.159 kb on + strand, within TX73_007210at 1556.174 kb on - strand, within TX73_007210at 1556.384 kb on + strand, within TX73_007210at 1556.450 kb on + strand, within TX73_007210at 1556.450 kb on + strand, within TX73_007210at 1556.458 kb on - strand, within TX73_007210at 1556.619 kb on + strand, within TX73_007210at 1556.629 kb on + strand, within TX73_007210at 1556.663 kb on + strand, within TX73_007210at 1556.671 kb on - strand, within TX73_007210at 1556.671 kb on - strand, within TX73_007210at 1556.671 kb on - strand, within TX73_007210at 1556.671 kb on - strand, within TX73_007210at 1556.671 kb on - strand, within TX73_007210at 1556.694 kb on + strandat 1556.710 kb on + strandat 1556.754 kb on + strandat 1556.754 kb on + strandat 1556.824 kb on + strandat 1556.824 kb on + strandat 1556.824 kb on + strandat 1556.874 kb on - strandat 1556.885 kb on + strandat 1556.893 kb on - strandat 1557.056 kb on - strandat 1557.056 kb on - strandat 1557.067 kb on - strandat 1557.071 kb on + strandat 1557.336 kb on - strand, within TX73_007215at 1557.355 kb on + strand, within TX73_007215at 1557.355 kb on + strand, within TX73_007215at 1557.406 kb on - strand, within TX73_007215at 1557.423 kb on - strand, within TX73_007215at 1557.498 kb on + strand, within TX73_007215at 1557.506 kb on - strand, within TX73_007215at 1557.535 kb on + strand, within TX73_007215at 1557.543 kb on - strand, within TX73_007215at 1557.557 kb on + strand, within TX73_007215at 1557.582 kb on + strand, within TX73_007215at 1557.587 kb on + strand, within TX73_007215at 1557.596 kb on - strand, within TX73_007215at 1557.756 kb on + strandat 1557.769 kb on - strand, within TX73_007220at 1557.877 kb on + strand, within TX73_007220at 1557.895 kb on + strand, within TX73_007220at 1558.016 kb on - strand, within TX73_007220at 1558.016 kb on - strand, within TX73_007220at 1558.116 kb on - strand, within TX73_007220at 1558.120 kb on + strand, within TX73_007220at 1558.133 kb on - strand, within TX73_007220at 1558.160 kb on + strand, within TX73_007220at 1558.160 kb on + strand, within TX73_007220at 1558.257 kb on - strand, within TX73_007220at 1558.455 kb on + strandat 1558.463 kb on - strandat 1558.484 kb on + strandat 1558.593 kb on - strandat 1558.613 kb on + strandat 1558.621 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-(Methylthio)ethanol sulfur source
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1,556,066 + TX73_007210 0.72 +0.3
1,556,071 + TX73_007210 0.73 -0.6
1,556,159 + TX73_007210 0.75 +0.8
1,556,174 - TX73_007210 0.76 -1.0
1,556,384 + TX73_007210 0.81 +0.1
1,556,450 + TX73_007210 0.83 +0.1
1,556,450 + TX73_007210 0.83 -1.6
1,556,458 - TX73_007210 0.84 +0.8
1,556,619 + TX73_007210 0.88 +0.6
1,556,629 + TX73_007210 0.88 +0.2
1,556,663 + TX73_007210 0.89 +0.5
1,556,671 - TX73_007210 0.90 +0.2
1,556,671 - TX73_007210 0.90 -0.1
1,556,671 - TX73_007210 0.90 -0.1
1,556,671 - TX73_007210 0.90 -0.1
1,556,671 - TX73_007210 0.90 -0.8
1,556,694 + +0.1
1,556,710 + -0.6
1,556,754 + -0.0
1,556,754 + -0.0
1,556,824 + -0.1
1,556,824 + +0.3
1,556,824 + +0.1
1,556,874 - -0.1
1,556,885 + +0.0
1,556,893 - +0.2
1,557,056 - -0.2
1,557,056 - -0.6
1,557,067 - +0.1
1,557,071 + -0.0
1,557,336 - TX73_007215 0.46 +0.3
1,557,355 + TX73_007215 0.49 +0.1
1,557,355 + TX73_007215 0.49 +0.7
1,557,406 - TX73_007215 0.57 +0.1
1,557,423 - TX73_007215 0.59 +0.9
1,557,498 + TX73_007215 0.71 +0.4
1,557,506 - TX73_007215 0.72 +0.1
1,557,535 + TX73_007215 0.77 -0.7
1,557,543 - TX73_007215 0.78 -0.7
1,557,557 + TX73_007215 0.81 +0.7
1,557,582 + TX73_007215 0.84 +0.3
1,557,587 + TX73_007215 0.85 -0.1
1,557,596 - TX73_007215 0.87 -0.2
1,557,756 + -0.2
1,557,769 - TX73_007220 0.10 -0.2
1,557,877 + TX73_007220 0.23 -0.7
1,557,895 + TX73_007220 0.25 +1.1
1,558,016 - TX73_007220 0.40 -0.7
1,558,016 - TX73_007220 0.40 -0.5
1,558,116 - TX73_007220 0.52 -0.3
1,558,120 + TX73_007220 0.52 -0.6
1,558,133 - TX73_007220 0.54 +0.9
1,558,160 + TX73_007220 0.57 -0.4
1,558,160 + TX73_007220 0.57 -0.4
1,558,257 - TX73_007220 0.68 -0.1
1,558,455 + -0.4
1,558,463 - +0.1
1,558,484 + -0.9
1,558,593 - -0.4
1,558,613 + +0.1
1,558,621 - -0.0

Or see this region's nucleotide sequence