Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_007205

Experiment: 2-(Methylthio)ethanol sulfur source

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntTX73_007200 and TX73_007205 are separated by 263 nucleotidesTX73_007205 and TX73_007210 overlap by 1 nucleotides TX73_007200: TX73_007200 - type 1 glutamine amidotransferase, at 1,550,580 to 1,551,407 _007200 TX73_007205: TX73_007205 - allophanate hydrolase, at 1,551,671 to 1,553,494 _007205 TX73_007210: TX73_007210 - urea carboxylase, at 1,553,494 to 1,557,042 _007210 Position (kb) 1551 1552 1553 1554Strain fitness (log2 ratio) -1 0 1 2at 1550.685 kb on - strand, within TX73_007200at 1550.722 kb on - strand, within TX73_007200at 1550.798 kb on - strand, within TX73_007200at 1550.881 kb on - strand, within TX73_007200at 1550.887 kb on + strand, within TX73_007200at 1550.895 kb on - strand, within TX73_007200at 1550.897 kb on + strand, within TX73_007200at 1551.056 kb on + strand, within TX73_007200at 1551.064 kb on - strand, within TX73_007200at 1551.146 kb on + strand, within TX73_007200at 1551.182 kb on + strand, within TX73_007200at 1551.185 kb on - strand, within TX73_007200at 1551.188 kb on - strand, within TX73_007200at 1551.221 kb on - strand, within TX73_007200at 1551.426 kb on + strandat 1551.434 kb on - strandat 1551.524 kb on + strandat 1551.599 kb on - strandat 1551.600 kb on - strandat 1551.634 kb on + strandat 1551.634 kb on + strandat 1551.660 kb on - strandat 1551.910 kb on + strand, within TX73_007205at 1551.915 kb on + strand, within TX73_007205at 1551.923 kb on - strand, within TX73_007205at 1552.006 kb on + strand, within TX73_007205at 1552.033 kb on + strand, within TX73_007205at 1552.036 kb on - strand, within TX73_007205at 1552.048 kb on + strand, within TX73_007205at 1552.105 kb on - strand, within TX73_007205at 1552.201 kb on + strand, within TX73_007205at 1552.259 kb on - strand, within TX73_007205at 1552.261 kb on + strand, within TX73_007205at 1552.261 kb on + strand, within TX73_007205at 1552.270 kb on + strand, within TX73_007205at 1552.366 kb on + strand, within TX73_007205at 1552.367 kb on + strand, within TX73_007205at 1552.383 kb on - strand, within TX73_007205at 1552.385 kb on + strand, within TX73_007205at 1552.385 kb on + strand, within TX73_007205at 1552.385 kb on + strand, within TX73_007205at 1552.393 kb on - strand, within TX73_007205at 1552.417 kb on - strand, within TX73_007205at 1552.454 kb on + strand, within TX73_007205at 1552.481 kb on - strand, within TX73_007205at 1552.536 kb on + strand, within TX73_007205at 1552.589 kb on + strand, within TX73_007205at 1552.589 kb on + strand, within TX73_007205at 1552.603 kb on + strand, within TX73_007205at 1552.625 kb on + strand, within TX73_007205at 1552.715 kb on - strand, within TX73_007205at 1552.880 kb on + strand, within TX73_007205at 1552.900 kb on + strand, within TX73_007205at 1552.935 kb on + strand, within TX73_007205at 1553.004 kb on - strand, within TX73_007205at 1553.011 kb on - strand, within TX73_007205at 1553.085 kb on - strand, within TX73_007205at 1553.127 kb on + strand, within TX73_007205at 1553.127 kb on + strand, within TX73_007205at 1553.510 kb on + strandat 1553.562 kb on - strandat 1553.658 kb on + strandat 1553.666 kb on - strandat 1553.671 kb on + strandat 1553.753 kb on + strandat 1553.761 kb on - strandat 1553.763 kb on + strandat 1553.771 kb on + strandat 1553.771 kb on + strandat 1553.848 kb on + strandat 1553.848 kb on + strandat 1553.849 kb on - strand, within TX73_007210at 1553.856 kb on - strand, within TX73_007210at 1553.881 kb on - strand, within TX73_007210at 1553.981 kb on + strand, within TX73_007210at 1554.018 kb on + strand, within TX73_007210at 1554.023 kb on + strand, within TX73_007210at 1554.023 kb on + strand, within TX73_007210at 1554.031 kb on - strand, within TX73_007210at 1554.089 kb on - strand, within TX73_007210at 1554.178 kb on - strand, within TX73_007210at 1554.210 kb on + strand, within TX73_007210at 1554.399 kb on - strand, within TX73_007210at 1554.413 kb on + strand, within TX73_007210at 1554.450 kb on - strand, within TX73_007210at 1554.485 kb on + strand, within TX73_007210at 1554.485 kb on + strand, within TX73_007210at 1554.493 kb on - strand, within TX73_007210

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-(Methylthio)ethanol sulfur source
remove
1,550,685 - TX73_007200 0.13 -0.2
1,550,722 - TX73_007200 0.17 +0.6
1,550,798 - TX73_007200 0.26 +0.6
1,550,881 - TX73_007200 0.36 +0.1
1,550,887 + TX73_007200 0.37 +0.7
1,550,895 - TX73_007200 0.38 +0.4
1,550,897 + TX73_007200 0.38 +2.2
1,551,056 + TX73_007200 0.57 +0.2
1,551,064 - TX73_007200 0.58 +0.1
1,551,146 + TX73_007200 0.68 +1.6
1,551,182 + TX73_007200 0.73 -0.5
1,551,185 - TX73_007200 0.73 -0.9
1,551,188 - TX73_007200 0.73 -0.7
1,551,221 - TX73_007200 0.77 +0.4
1,551,426 + +0.0
1,551,434 - -0.3
1,551,524 + -0.0
1,551,599 - +0.0
1,551,600 - +0.2
1,551,634 + -0.7
1,551,634 + -0.5
1,551,660 - +0.3
1,551,910 + TX73_007205 0.13 +0.0
1,551,915 + TX73_007205 0.13 -0.6
1,551,923 - TX73_007205 0.14 +0.5
1,552,006 + TX73_007205 0.18 +1.9
1,552,033 + TX73_007205 0.20 -0.8
1,552,036 - TX73_007205 0.20 +0.4
1,552,048 + TX73_007205 0.21 +0.4
1,552,105 - TX73_007205 0.24 +0.1
1,552,201 + TX73_007205 0.29 -0.2
1,552,259 - TX73_007205 0.32 +0.7
1,552,261 + TX73_007205 0.32 +1.3
1,552,261 + TX73_007205 0.32 +0.5
1,552,270 + TX73_007205 0.33 +0.6
1,552,366 + TX73_007205 0.38 +0.2
1,552,367 + TX73_007205 0.38 -0.5
1,552,383 - TX73_007205 0.39 +1.4
1,552,385 + TX73_007205 0.39 +0.6
1,552,385 + TX73_007205 0.39 +0.3
1,552,385 + TX73_007205 0.39 +0.4
1,552,393 - TX73_007205 0.40 +0.1
1,552,417 - TX73_007205 0.41 +0.8
1,552,454 + TX73_007205 0.43 +0.0
1,552,481 - TX73_007205 0.44 +0.1
1,552,536 + TX73_007205 0.47 -1.1
1,552,589 + TX73_007205 0.50 -0.0
1,552,589 + TX73_007205 0.50 +0.4
1,552,603 + TX73_007205 0.51 +0.2
1,552,625 + TX73_007205 0.52 -0.2
1,552,715 - TX73_007205 0.57 -0.5
1,552,880 + TX73_007205 0.66 -0.3
1,552,900 + TX73_007205 0.67 +0.3
1,552,935 + TX73_007205 0.69 +0.8
1,553,004 - TX73_007205 0.73 -0.2
1,553,011 - TX73_007205 0.73 +1.0
1,553,085 - TX73_007205 0.78 +0.4
1,553,127 + TX73_007205 0.80 +0.1
1,553,127 + TX73_007205 0.80 +0.7
1,553,510 + -0.1
1,553,562 - +0.4
1,553,658 + +0.7
1,553,666 - +0.2
1,553,671 + +0.0
1,553,753 + +0.7
1,553,761 - -0.7
1,553,763 + -0.2
1,553,771 + -0.2
1,553,771 + -1.2
1,553,848 + -0.6
1,553,848 + -0.1
1,553,849 - TX73_007210 0.10 +0.9
1,553,856 - TX73_007210 0.10 -0.0
1,553,881 - TX73_007210 0.11 +0.5
1,553,981 + TX73_007210 0.14 +0.4
1,554,018 + TX73_007210 0.15 -0.3
1,554,023 + TX73_007210 0.15 +0.4
1,554,023 + TX73_007210 0.15 +1.1
1,554,031 - TX73_007210 0.15 +0.1
1,554,089 - TX73_007210 0.17 +0.4
1,554,178 - TX73_007210 0.19 +0.1
1,554,210 + TX73_007210 0.20 +0.5
1,554,399 - TX73_007210 0.26 +0.7
1,554,413 + TX73_007210 0.26 -0.4
1,554,450 - TX73_007210 0.27 -0.8
1,554,485 + TX73_007210 0.28 -0.6
1,554,485 + TX73_007210 0.28 -0.2
1,554,493 - TX73_007210 0.28 -0.9

Or see this region's nucleotide sequence