Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_005445

Experiment: 2-(Methylthio)ethanol sulfur source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_005440 and TX73_005445 are separated by 85 nucleotidesTX73_005445 and TX73_005450 are separated by 7 nucleotidesTX73_005450 and TX73_005455 overlap by 8 nucleotides TX73_005440: TX73_005440 - helix-turn-helix transcriptional regulator, at 1,167,312 to 1,168,334 _005440 TX73_005445: TX73_005445 - TonB-dependent receptor, at 1,168,420 to 1,170,636 _005445 TX73_005450: TX73_005450 - hypothetical protein, at 1,170,644 to 1,171,087 _005450 TX73_005455: TX73_005455 - class I SAM-dependent methyltransferase, at 1,171,080 to 1,171,934 _005455 Position (kb) 1168 1169 1170 1171Strain fitness (log2 ratio) -2 -1 0 1at 1167.426 kb on + strand, within TX73_005440at 1167.455 kb on - strand, within TX73_005440at 1167.468 kb on + strand, within TX73_005440at 1167.468 kb on + strand, within TX73_005440at 1167.470 kb on + strand, within TX73_005440at 1167.476 kb on - strand, within TX73_005440at 1167.500 kb on + strand, within TX73_005440at 1167.500 kb on + strand, within TX73_005440at 1167.501 kb on + strand, within TX73_005440at 1167.503 kb on - strand, within TX73_005440at 1167.521 kb on + strand, within TX73_005440at 1167.526 kb on + strand, within TX73_005440at 1167.537 kb on + strand, within TX73_005440at 1167.572 kb on - strand, within TX73_005440at 1167.594 kb on - strand, within TX73_005440at 1167.607 kb on + strand, within TX73_005440at 1167.608 kb on - strand, within TX73_005440at 1167.618 kb on + strand, within TX73_005440at 1167.620 kb on - strand, within TX73_005440at 1167.625 kb on - strand, within TX73_005440at 1167.659 kb on + strand, within TX73_005440at 1167.659 kb on + strand, within TX73_005440at 1167.659 kb on + strand, within TX73_005440at 1167.667 kb on - strand, within TX73_005440at 1167.701 kb on - strand, within TX73_005440at 1167.702 kb on + strand, within TX73_005440at 1167.725 kb on + strand, within TX73_005440at 1167.740 kb on + strand, within TX73_005440at 1167.779 kb on + strand, within TX73_005440at 1167.787 kb on - strand, within TX73_005440at 1167.831 kb on + strand, within TX73_005440at 1167.832 kb on + strand, within TX73_005440at 1167.840 kb on - strand, within TX73_005440at 1167.856 kb on + strand, within TX73_005440at 1167.861 kb on + strand, within TX73_005440at 1167.863 kb on + strand, within TX73_005440at 1167.925 kb on + strand, within TX73_005440at 1167.926 kb on - strand, within TX73_005440at 1167.934 kb on + strand, within TX73_005440at 1167.948 kb on - strand, within TX73_005440at 1167.966 kb on - strand, within TX73_005440at 1168.017 kb on + strand, within TX73_005440at 1168.025 kb on - strand, within TX73_005440at 1168.039 kb on + strand, within TX73_005440at 1168.039 kb on + strand, within TX73_005440at 1168.081 kb on + strand, within TX73_005440at 1168.203 kb on - strand, within TX73_005440at 1168.338 kb on - strandat 1168.382 kb on + strandat 1168.462 kb on - strandat 1168.469 kb on - strandat 1168.554 kb on - strandat 1168.573 kb on + strandat 1168.581 kb on - strandat 1168.636 kb on + strandat 1168.641 kb on + strandat 1168.659 kb on - strand, within TX73_005445at 1168.659 kb on - strand, within TX73_005445at 1168.707 kb on + strand, within TX73_005445at 1168.715 kb on - strand, within TX73_005445at 1168.731 kb on + strand, within TX73_005445at 1168.731 kb on + strand, within TX73_005445at 1168.757 kb on + strand, within TX73_005445at 1168.808 kb on - strand, within TX73_005445at 1168.832 kb on - strand, within TX73_005445at 1168.851 kb on + strand, within TX73_005445at 1168.866 kb on + strand, within TX73_005445at 1168.929 kb on + strand, within TX73_005445at 1168.937 kb on - strand, within TX73_005445at 1168.937 kb on - strand, within TX73_005445at 1169.032 kb on - strand, within TX73_005445at 1169.056 kb on - strand, within TX73_005445at 1169.085 kb on + strand, within TX73_005445at 1169.093 kb on - strand, within TX73_005445at 1169.098 kb on - strand, within TX73_005445at 1169.146 kb on + strand, within TX73_005445at 1169.195 kb on - strand, within TX73_005445at 1169.265 kb on + strand, within TX73_005445at 1169.382 kb on - strand, within TX73_005445at 1169.393 kb on - strand, within TX73_005445at 1169.393 kb on - strand, within TX73_005445at 1169.393 kb on - strand, within TX73_005445at 1169.457 kb on - strand, within TX73_005445at 1169.490 kb on - strand, within TX73_005445at 1169.542 kb on + strand, within TX73_005445at 1169.610 kb on + strand, within TX73_005445at 1169.618 kb on - strand, within TX73_005445at 1169.661 kb on - strand, within TX73_005445at 1169.794 kb on + strand, within TX73_005445at 1169.802 kb on - strand, within TX73_005445at 1169.871 kb on + strand, within TX73_005445at 1169.878 kb on - strand, within TX73_005445at 1169.887 kb on + strand, within TX73_005445at 1169.944 kb on + strand, within TX73_005445at 1169.973 kb on + strand, within TX73_005445at 1169.976 kb on + strand, within TX73_005445at 1169.999 kb on + strand, within TX73_005445at 1170.001 kb on - strand, within TX73_005445at 1170.120 kb on - strand, within TX73_005445at 1170.134 kb on - strand, within TX73_005445at 1170.151 kb on + strand, within TX73_005445at 1170.151 kb on + strand, within TX73_005445at 1170.249 kb on + strand, within TX73_005445at 1170.353 kb on + strand, within TX73_005445at 1170.357 kb on + strand, within TX73_005445at 1170.424 kb on + strandat 1170.430 kb on + strandat 1170.431 kb on - strandat 1170.446 kb on + strandat 1170.465 kb on + strandat 1170.478 kb on + strandat 1170.539 kb on - strandat 1170.563 kb on - strandat 1170.614 kb on - strandat 1170.617 kb on - strandat 1170.641 kb on + strandat 1170.654 kb on - strandat 1170.678 kb on + strandat 1170.681 kb on - strandat 1170.702 kb on + strand, within TX73_005450at 1170.713 kb on + strand, within TX73_005450at 1170.732 kb on + strand, within TX73_005450at 1170.745 kb on + strand, within TX73_005450at 1170.755 kb on - strand, within TX73_005450at 1170.768 kb on - strand, within TX73_005450at 1170.804 kb on - strand, within TX73_005450at 1170.817 kb on - strand, within TX73_005450at 1170.857 kb on + strand, within TX73_005450at 1170.900 kb on - strand, within TX73_005450at 1170.912 kb on + strand, within TX73_005450at 1170.920 kb on - strand, within TX73_005450at 1170.930 kb on - strand, within TX73_005450at 1170.930 kb on - strand, within TX73_005450at 1170.930 kb on - strand, within TX73_005450at 1170.957 kb on - strand, within TX73_005450at 1170.957 kb on - strand, within TX73_005450at 1170.958 kb on - strand, within TX73_005450at 1171.006 kb on + strand, within TX73_005450at 1171.039 kb on + strand, within TX73_005450at 1171.039 kb on + strand, within TX73_005450at 1171.051 kb on + strandat 1171.056 kb on + strandat 1171.056 kb on + strandat 1171.079 kb on - strandat 1171.082 kb on - strandat 1171.114 kb on + strandat 1171.117 kb on - strandat 1171.122 kb on - strandat 1171.150 kb on - strandat 1171.166 kb on - strand, within TX73_005455at 1171.192 kb on + strand, within TX73_005455at 1171.200 kb on - strand, within TX73_005455at 1171.210 kb on + strand, within TX73_005455at 1171.233 kb on - strand, within TX73_005455at 1171.238 kb on - strand, within TX73_005455at 1171.257 kb on - strand, within TX73_005455at 1171.258 kb on + strand, within TX73_005455at 1171.260 kb on + strand, within TX73_005455at 1171.283 kb on + strand, within TX73_005455at 1171.299 kb on - strand, within TX73_005455at 1171.330 kb on - strand, within TX73_005455at 1171.347 kb on + strand, within TX73_005455at 1171.347 kb on + strand, within TX73_005455at 1171.347 kb on + strand, within TX73_005455at 1171.347 kb on + strand, within TX73_005455at 1171.347 kb on + strand, within TX73_005455at 1171.347 kb on + strand, within TX73_005455at 1171.355 kb on - strand, within TX73_005455at 1171.355 kb on - strand, within TX73_005455at 1171.355 kb on - strand, within TX73_005455at 1171.371 kb on + strand, within TX73_005455at 1171.374 kb on - strand, within TX73_005455at 1171.379 kb on - strand, within TX73_005455at 1171.413 kb on + strand, within TX73_005455at 1171.470 kb on + strand, within TX73_005455at 1171.505 kb on + strand, within TX73_005455at 1171.519 kb on + strand, within TX73_005455at 1171.519 kb on + strand, within TX73_005455at 1171.527 kb on + strand, within TX73_005455at 1171.527 kb on + strand, within TX73_005455at 1171.527 kb on - strand, within TX73_005455at 1171.535 kb on - strand, within TX73_005455

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-(Methylthio)ethanol sulfur source
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1,167,426 + TX73_005440 0.11 -0.6
1,167,455 - TX73_005440 0.14 -0.1
1,167,468 + TX73_005440 0.15 -0.9
1,167,468 + TX73_005440 0.15 +0.2
1,167,470 + TX73_005440 0.15 +0.1
1,167,476 - TX73_005440 0.16 -0.2
1,167,500 + TX73_005440 0.18 -0.2
1,167,500 + TX73_005440 0.18 +0.8
1,167,501 + TX73_005440 0.18 -0.0
1,167,503 - TX73_005440 0.19 +0.3
1,167,521 + TX73_005440 0.20 +0.1
1,167,526 + TX73_005440 0.21 +0.1
1,167,537 + TX73_005440 0.22 +0.0
1,167,572 - TX73_005440 0.25 -0.9
1,167,594 - TX73_005440 0.28 +0.0
1,167,607 + TX73_005440 0.29 +0.3
1,167,608 - TX73_005440 0.29 +0.3
1,167,618 + TX73_005440 0.30 -0.5
1,167,620 - TX73_005440 0.30 -0.3
1,167,625 - TX73_005440 0.31 -0.2
1,167,659 + TX73_005440 0.34 +0.2
1,167,659 + TX73_005440 0.34 -0.5
1,167,659 + TX73_005440 0.34 +0.3
1,167,667 - TX73_005440 0.35 +0.2
1,167,701 - TX73_005440 0.38 +0.3
1,167,702 + TX73_005440 0.38 -1.1
1,167,725 + TX73_005440 0.40 +0.7
1,167,740 + TX73_005440 0.42 -0.6
1,167,779 + TX73_005440 0.46 -0.5
1,167,787 - TX73_005440 0.46 +0.5
1,167,831 + TX73_005440 0.51 +0.2
1,167,832 + TX73_005440 0.51 +0.1
1,167,840 - TX73_005440 0.52 +0.2
1,167,856 + TX73_005440 0.53 +0.0
1,167,861 + TX73_005440 0.54 +0.1
1,167,863 + TX73_005440 0.54 +0.1
1,167,925 + TX73_005440 0.60 -0.1
1,167,926 - TX73_005440 0.60 -0.2
1,167,934 + TX73_005440 0.61 +0.0
1,167,948 - TX73_005440 0.62 -0.0
1,167,966 - TX73_005440 0.64 +0.1
1,168,017 + TX73_005440 0.69 +0.0
1,168,025 - TX73_005440 0.70 -0.5
1,168,039 + TX73_005440 0.71 -0.1
1,168,039 + TX73_005440 0.71 -0.1
1,168,081 + TX73_005440 0.75 -0.3
1,168,203 - TX73_005440 0.87 +0.3
1,168,338 - +0.1
1,168,382 + -0.1
1,168,462 - -0.0
1,168,469 - +0.1
1,168,554 - +0.2
1,168,573 + -0.1
1,168,581 - +0.9
1,168,636 + +0.4
1,168,641 + +0.5
1,168,659 - TX73_005445 0.11 -0.5
1,168,659 - TX73_005445 0.11 +0.4
1,168,707 + TX73_005445 0.13 +0.1
1,168,715 - TX73_005445 0.13 +0.2
1,168,731 + TX73_005445 0.14 -0.3
1,168,731 + TX73_005445 0.14 -1.1
1,168,757 + TX73_005445 0.15 +0.4
1,168,808 - TX73_005445 0.18 +0.2
1,168,832 - TX73_005445 0.19 +0.2
1,168,851 + TX73_005445 0.19 -0.9
1,168,866 + TX73_005445 0.20 -0.2
1,168,929 + TX73_005445 0.23 -0.3
1,168,937 - TX73_005445 0.23 -0.3
1,168,937 - TX73_005445 0.23 +0.1
1,169,032 - TX73_005445 0.28 +0.0
1,169,056 - TX73_005445 0.29 +0.0
1,169,085 + TX73_005445 0.30 +0.1
1,169,093 - TX73_005445 0.30 -0.5
1,169,098 - TX73_005445 0.31 -0.2
1,169,146 + TX73_005445 0.33 +0.9
1,169,195 - TX73_005445 0.35 +1.1
1,169,265 + TX73_005445 0.38 -2.1
1,169,382 - TX73_005445 0.43 +0.2
1,169,393 - TX73_005445 0.44 +0.3
1,169,393 - TX73_005445 0.44 +0.4
1,169,393 - TX73_005445 0.44 +0.7
1,169,457 - TX73_005445 0.47 -0.2
1,169,490 - TX73_005445 0.48 +0.4
1,169,542 + TX73_005445 0.51 +0.3
1,169,610 + TX73_005445 0.54 +1.0
1,169,618 - TX73_005445 0.54 +0.3
1,169,661 - TX73_005445 0.56 +0.2
1,169,794 + TX73_005445 0.62 +0.0
1,169,802 - TX73_005445 0.62 -0.4
1,169,871 + TX73_005445 0.65 -0.4
1,169,878 - TX73_005445 0.66 -0.1
1,169,887 + TX73_005445 0.66 +0.8
1,169,944 + TX73_005445 0.69 -2.1
1,169,973 + TX73_005445 0.70 +0.2
1,169,976 + TX73_005445 0.70 -0.4
1,169,999 + TX73_005445 0.71 +0.6
1,170,001 - TX73_005445 0.71 -1.4
1,170,120 - TX73_005445 0.77 +0.1
1,170,134 - TX73_005445 0.77 -0.1
1,170,151 + TX73_005445 0.78 +1.6
1,170,151 + TX73_005445 0.78 -0.2
1,170,249 + TX73_005445 0.82 -0.0
1,170,353 + TX73_005445 0.87 +0.2
1,170,357 + TX73_005445 0.87 -0.8
1,170,424 + -0.1
1,170,430 + +0.1
1,170,431 - -0.7
1,170,446 + -0.7
1,170,465 + -0.2
1,170,478 + +0.9
1,170,539 - +0.1
1,170,563 - -0.4
1,170,614 - +0.1
1,170,617 - -0.1
1,170,641 + +0.2
1,170,654 - +0.3
1,170,678 + +0.3
1,170,681 - -0.1
1,170,702 + TX73_005450 0.13 +0.1
1,170,713 + TX73_005450 0.16 +0.8
1,170,732 + TX73_005450 0.20 -0.7
1,170,745 + TX73_005450 0.23 +0.8
1,170,755 - TX73_005450 0.25 -0.2
1,170,768 - TX73_005450 0.28 -0.9
1,170,804 - TX73_005450 0.36 +0.3
1,170,817 - TX73_005450 0.39 +0.1
1,170,857 + TX73_005450 0.48 -0.1
1,170,900 - TX73_005450 0.58 +0.6
1,170,912 + TX73_005450 0.60 +0.3
1,170,920 - TX73_005450 0.62 +1.0
1,170,930 - TX73_005450 0.64 +0.3
1,170,930 - TX73_005450 0.64 +0.3
1,170,930 - TX73_005450 0.64 +0.1
1,170,957 - TX73_005450 0.70 -0.3
1,170,957 - TX73_005450 0.70 +0.2
1,170,958 - TX73_005450 0.71 -0.1
1,171,006 + TX73_005450 0.82 +0.3
1,171,039 + TX73_005450 0.89 +0.5
1,171,039 + TX73_005450 0.89 -0.0
1,171,051 + -0.2
1,171,056 + -0.0
1,171,056 + +0.4
1,171,079 - +0.4
1,171,082 - +0.2
1,171,114 + -0.7
1,171,117 - -0.0
1,171,122 - -0.0
1,171,150 - +0.0
1,171,166 - TX73_005455 0.10 +0.1
1,171,192 + TX73_005455 0.13 -0.8
1,171,200 - TX73_005455 0.14 +0.3
1,171,210 + TX73_005455 0.15 -0.2
1,171,233 - TX73_005455 0.18 -0.5
1,171,238 - TX73_005455 0.18 +0.1
1,171,257 - TX73_005455 0.21 +0.1
1,171,258 + TX73_005455 0.21 +0.1
1,171,260 + TX73_005455 0.21 +0.1
1,171,283 + TX73_005455 0.24 +0.3
1,171,299 - TX73_005455 0.26 +0.1
1,171,330 - TX73_005455 0.29 -0.6
1,171,347 + TX73_005455 0.31 +0.3
1,171,347 + TX73_005455 0.31 +0.2
1,171,347 + TX73_005455 0.31 +0.1
1,171,347 + TX73_005455 0.31 -0.1
1,171,347 + TX73_005455 0.31 +0.1
1,171,347 + TX73_005455 0.31 -0.6
1,171,355 - TX73_005455 0.32 +0.0
1,171,355 - TX73_005455 0.32 -0.4
1,171,355 - TX73_005455 0.32 -0.9
1,171,371 + TX73_005455 0.34 -0.4
1,171,374 - TX73_005455 0.34 +0.2
1,171,379 - TX73_005455 0.35 -0.1
1,171,413 + TX73_005455 0.39 -0.0
1,171,470 + TX73_005455 0.46 +0.0
1,171,505 + TX73_005455 0.50 -1.1
1,171,519 + TX73_005455 0.51 +0.1
1,171,519 + TX73_005455 0.51 +0.7
1,171,527 + TX73_005455 0.52 -0.2
1,171,527 + TX73_005455 0.52 -0.2
1,171,527 - TX73_005455 0.52 -0.1
1,171,535 - TX73_005455 0.53 +0.5

Or see this region's nucleotide sequence