Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_001895

Experiment: 2-(Methylthio)ethanol sulfur source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_001890 and TX73_001895 are separated by 98 nucleotidesTX73_001895 and TX73_001900 are separated by 209 nucleotides TX73_001890: TX73_001890 - MBL fold metallo-hydrolase, at 395,641 to 396,537 _001890 TX73_001895: TX73_001895 - hypothetical protein, at 396,636 to 396,998 _001895 TX73_001900: TX73_001900 - RNA polymerase sigma factor RpoH, at 397,208 to 398,107 _001900 Position (kb) 396 397Strain fitness (log2 ratio) -3 -2 -1 0 1at 395.637 kb on - strandat 395.637 kb on - strandat 395.638 kb on + strandat 395.638 kb on + strandat 395.646 kb on - strandat 395.652 kb on + strandat 395.688 kb on + strandat 395.700 kb on + strandat 395.700 kb on + strandat 395.700 kb on + strandat 395.700 kb on + strandat 395.719 kb on - strandat 395.752 kb on + strand, within TX73_001890at 395.759 kb on + strand, within TX73_001890at 395.759 kb on + strand, within TX73_001890at 395.759 kb on + strand, within TX73_001890at 395.759 kb on + strand, within TX73_001890at 395.759 kb on + strand, within TX73_001890at 395.759 kb on + strand, within TX73_001890at 395.759 kb on + strand, within TX73_001890at 395.760 kb on - strand, within TX73_001890at 395.760 kb on - strand, within TX73_001890at 395.762 kb on - strand, within TX73_001890at 395.766 kb on - strand, within TX73_001890at 395.767 kb on - strand, within TX73_001890at 395.767 kb on - strand, within TX73_001890at 395.767 kb on - strand, within TX73_001890at 395.767 kb on - strand, within TX73_001890at 395.767 kb on - strand, within TX73_001890at 395.767 kb on - strand, within TX73_001890at 395.767 kb on - strand, within TX73_001890at 395.770 kb on + strand, within TX73_001890at 395.796 kb on + strand, within TX73_001890at 395.806 kb on + strand, within TX73_001890at 395.808 kb on + strand, within TX73_001890at 395.808 kb on + strand, within TX73_001890at 395.809 kb on - strand, within TX73_001890at 395.814 kb on - strand, within TX73_001890at 395.814 kb on - strand, within TX73_001890at 395.816 kb on - strand, within TX73_001890at 395.816 kb on - strand, within TX73_001890at 395.816 kb on - strand, within TX73_001890at 395.832 kb on + strand, within TX73_001890at 395.832 kb on + strand, within TX73_001890at 395.851 kb on + strand, within TX73_001890at 395.856 kb on + strand, within TX73_001890at 395.856 kb on - strand, within TX73_001890at 395.857 kb on + strand, within TX73_001890at 395.857 kb on + strand, within TX73_001890at 395.859 kb on - strand, within TX73_001890at 395.862 kb on + strand, within TX73_001890at 395.865 kb on - strand, within TX73_001890at 395.866 kb on - strand, within TX73_001890at 395.875 kb on + strand, within TX73_001890at 395.885 kb on - strand, within TX73_001890at 395.890 kb on + strand, within TX73_001890at 395.890 kb on + strand, within TX73_001890at 395.890 kb on + strand, within TX73_001890at 395.898 kb on - strand, within TX73_001890at 395.898 kb on - strand, within TX73_001890at 395.898 kb on - strand, within TX73_001890at 395.901 kb on + strand, within TX73_001890at 395.903 kb on - strand, within TX73_001890at 395.919 kb on + strand, within TX73_001890at 395.919 kb on + strand, within TX73_001890at 395.927 kb on - strand, within TX73_001890at 395.937 kb on + strand, within TX73_001890at 395.937 kb on + strand, within TX73_001890at 395.937 kb on + strand, within TX73_001890at 395.937 kb on + strand, within TX73_001890at 395.937 kb on + strand, within TX73_001890at 395.945 kb on - strand, within TX73_001890at 395.945 kb on - strand, within TX73_001890at 395.945 kb on - strand, within TX73_001890at 395.970 kb on + strand, within TX73_001890at 395.978 kb on - strand, within TX73_001890at 395.978 kb on - strand, within TX73_001890at 396.026 kb on - strand, within TX73_001890at 396.026 kb on - strand, within TX73_001890at 396.026 kb on - strand, within TX73_001890at 396.026 kb on - strand, within TX73_001890at 396.036 kb on + strand, within TX73_001890at 396.036 kb on + strand, within TX73_001890at 396.051 kb on - strand, within TX73_001890at 396.056 kb on + strand, within TX73_001890at 396.059 kb on - strand, within TX73_001890at 396.064 kb on - strand, within TX73_001890at 396.069 kb on + strand, within TX73_001890at 396.069 kb on + strand, within TX73_001890at 396.070 kb on - strand, within TX73_001890at 396.075 kb on - strand, within TX73_001890at 396.080 kb on + strand, within TX73_001890at 396.088 kb on - strand, within TX73_001890at 396.088 kb on - strand, within TX73_001890at 396.092 kb on - strand, within TX73_001890at 396.096 kb on - strand, within TX73_001890at 396.131 kb on - strand, within TX73_001890at 396.141 kb on + strand, within TX73_001890at 396.141 kb on + strand, within TX73_001890at 396.141 kb on + strand, within TX73_001890at 396.141 kb on + strand, within TX73_001890at 396.141 kb on + strand, within TX73_001890at 396.141 kb on + strand, within TX73_001890at 396.141 kb on + strand, within TX73_001890at 396.141 kb on + strand, within TX73_001890at 396.149 kb on - strand, within TX73_001890at 396.149 kb on - strand, within TX73_001890at 396.149 kb on - strand, within TX73_001890at 396.149 kb on - strand, within TX73_001890at 396.159 kb on - strand, within TX73_001890at 396.161 kb on - strand, within TX73_001890at 396.209 kb on - strand, within TX73_001890at 396.211 kb on + strand, within TX73_001890at 396.235 kb on + strand, within TX73_001890at 396.243 kb on - strand, within TX73_001890at 396.243 kb on - strand, within TX73_001890at 396.244 kb on + strand, within TX73_001890at 396.263 kb on + strand, within TX73_001890at 396.284 kb on + strand, within TX73_001890at 396.293 kb on - strand, within TX73_001890at 396.294 kb on - strand, within TX73_001890at 396.310 kb on - strand, within TX73_001890at 396.320 kb on - strand, within TX73_001890at 396.349 kb on - strand, within TX73_001890at 396.362 kb on + strand, within TX73_001890at 396.394 kb on + strand, within TX73_001890at 396.402 kb on - strand, within TX73_001890at 396.402 kb on - strand, within TX73_001890at 396.432 kb on + strand, within TX73_001890at 396.438 kb on + strand, within TX73_001890at 396.438 kb on + strand, within TX73_001890at 396.468 kb on + strandat 396.468 kb on + strandat 396.468 kb on + strandat 396.476 kb on - strandat 396.476 kb on - strandat 396.476 kb on - strandat 396.489 kb on + strandat 396.489 kb on + strandat 396.493 kb on - strandat 396.497 kb on - strandat 396.527 kb on + strandat 396.570 kb on + strandat 396.580 kb on + strandat 396.587 kb on + strandat 396.588 kb on - strandat 396.588 kb on - strandat 396.588 kb on - strandat 396.590 kb on - strandat 396.594 kb on + strandat 396.595 kb on - strandat 396.595 kb on - strandat 396.621 kb on - strandat 396.644 kb on + strandat 396.644 kb on + strandat 396.646 kb on - strandat 396.652 kb on - strandat 396.652 kb on - strandat 396.679 kb on - strand, within TX73_001895at 396.710 kb on + strand, within TX73_001895at 396.718 kb on - strand, within TX73_001895at 396.718 kb on - strand, within TX73_001895at 396.739 kb on - strand, within TX73_001895at 396.773 kb on + strand, within TX73_001895at 396.795 kb on + strand, within TX73_001895at 396.815 kb on + strand, within TX73_001895at 396.823 kb on - strand, within TX73_001895at 396.823 kb on - strand, within TX73_001895at 396.845 kb on + strand, within TX73_001895at 396.890 kb on + strand, within TX73_001895at 396.890 kb on + strand, within TX73_001895at 396.896 kb on + strand, within TX73_001895at 396.965 kb on - strandat 396.971 kb on + strandat 396.976 kb on - strandat 397.002 kb on - strandat 397.052 kb on - strandat 397.064 kb on + strandat 397.074 kb on + strandat 397.112 kb on - strandat 397.123 kb on + strandat 397.123 kb on + strandat 397.142 kb on - strandat 397.171 kb on + strandat 397.176 kb on + strandat 397.184 kb on - strandat 397.185 kb on + strandat 397.185 kb on + strandat 397.190 kb on + strandat 397.190 kb on + strandat 397.191 kb on - strandat 397.193 kb on - strandat 397.193 kb on - strandat 397.193 kb on - strandat 397.193 kb on - strandat 397.193 kb on - strandat 397.213 kb on + strandat 397.218 kb on + strandat 397.218 kb on + strandat 397.253 kb on + strandat 397.261 kb on - strandat 397.261 kb on - strandat 397.266 kb on + strandat 397.271 kb on - strandat 397.273 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-(Methylthio)ethanol sulfur source
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395,637 - +0.4
395,637 - -1.1
395,638 + +0.1
395,638 + +0.5
395,646 - -0.5
395,652 + -0.1
395,688 + +0.8
395,700 + -0.4
395,700 + -0.6
395,700 + -0.2
395,700 + -0.9
395,719 - -0.0
395,752 + TX73_001890 0.12 -0.2
395,759 + TX73_001890 0.13 -0.1
395,759 + TX73_001890 0.13 -0.1
395,759 + TX73_001890 0.13 +0.4
395,759 + TX73_001890 0.13 +0.3
395,759 + TX73_001890 0.13 -0.0
395,759 + TX73_001890 0.13 +0.1
395,759 + TX73_001890 0.13 -0.7
395,760 - TX73_001890 0.13 -0.7
395,760 - TX73_001890 0.13 -0.2
395,762 - TX73_001890 0.13 -0.2
395,766 - TX73_001890 0.14 -0.3
395,767 - TX73_001890 0.14 -0.6
395,767 - TX73_001890 0.14 -1.0
395,767 - TX73_001890 0.14 -0.6
395,767 - TX73_001890 0.14 +0.0
395,767 - TX73_001890 0.14 -0.8
395,767 - TX73_001890 0.14 -0.5
395,767 - TX73_001890 0.14 -0.6
395,770 + TX73_001890 0.14 +0.1
395,796 + TX73_001890 0.17 +0.3
395,806 + TX73_001890 0.18 +0.1
395,808 + TX73_001890 0.19 +0.2
395,808 + TX73_001890 0.19 -0.3
395,809 - TX73_001890 0.19 +0.3
395,814 - TX73_001890 0.19 -0.0
395,814 - TX73_001890 0.19 -1.3
395,816 - TX73_001890 0.20 -0.6
395,816 - TX73_001890 0.20 +0.2
395,816 - TX73_001890 0.20 +0.1
395,832 + TX73_001890 0.21 +0.2
395,832 + TX73_001890 0.21 +0.1
395,851 + TX73_001890 0.23 +0.8
395,856 + TX73_001890 0.24 +0.1
395,856 - TX73_001890 0.24 +0.1
395,857 + TX73_001890 0.24 +0.4
395,857 + TX73_001890 0.24 +0.3
395,859 - TX73_001890 0.24 -0.2
395,862 + TX73_001890 0.25 +0.1
395,865 - TX73_001890 0.25 +0.2
395,866 - TX73_001890 0.25 +0.3
395,875 + TX73_001890 0.26 +0.2
395,885 - TX73_001890 0.27 -1.1
395,890 + TX73_001890 0.28 +0.6
395,890 + TX73_001890 0.28 -0.3
395,890 + TX73_001890 0.28 -0.3
395,898 - TX73_001890 0.29 -0.3
395,898 - TX73_001890 0.29 +0.2
395,898 - TX73_001890 0.29 -0.9
395,901 + TX73_001890 0.29 +0.1
395,903 - TX73_001890 0.29 +0.3
395,919 + TX73_001890 0.31 +0.4
395,919 + TX73_001890 0.31 -0.7
395,927 - TX73_001890 0.32 -0.2
395,937 + TX73_001890 0.33 +0.5
395,937 + TX73_001890 0.33 +0.3
395,937 + TX73_001890 0.33 -0.1
395,937 + TX73_001890 0.33 -0.9
395,937 + TX73_001890 0.33 +0.2
395,945 - TX73_001890 0.34 +0.4
395,945 - TX73_001890 0.34 +0.7
395,945 - TX73_001890 0.34 -0.8
395,970 + TX73_001890 0.37 -0.2
395,978 - TX73_001890 0.38 +0.2
395,978 - TX73_001890 0.38 +0.8
396,026 - TX73_001890 0.43 -0.1
396,026 - TX73_001890 0.43 -0.1
396,026 - TX73_001890 0.43 +0.1
396,026 - TX73_001890 0.43 +0.4
396,036 + TX73_001890 0.44 -0.3
396,036 + TX73_001890 0.44 -0.5
396,051 - TX73_001890 0.46 -0.1
396,056 + TX73_001890 0.46 -0.0
396,059 - TX73_001890 0.47 -0.3
396,064 - TX73_001890 0.47 -0.3
396,069 + TX73_001890 0.48 +0.3
396,069 + TX73_001890 0.48 -0.5
396,070 - TX73_001890 0.48 +0.1
396,075 - TX73_001890 0.48 -1.4
396,080 + TX73_001890 0.49 -0.1
396,088 - TX73_001890 0.50 -0.9
396,088 - TX73_001890 0.50 +0.2
396,092 - TX73_001890 0.50 +0.9
396,096 - TX73_001890 0.51 +0.8
396,131 - TX73_001890 0.55 +0.1
396,141 + TX73_001890 0.56 +0.3
396,141 + TX73_001890 0.56 +0.2
396,141 + TX73_001890 0.56 -0.9
396,141 + TX73_001890 0.56 +0.3
396,141 + TX73_001890 0.56 +0.5
396,141 + TX73_001890 0.56 -0.3
396,141 + TX73_001890 0.56 -0.2
396,141 + TX73_001890 0.56 +0.3
396,149 - TX73_001890 0.57 +0.9
396,149 - TX73_001890 0.57 -0.1
396,149 - TX73_001890 0.57 +0.1
396,149 - TX73_001890 0.57 -0.5
396,159 - TX73_001890 0.58 -1.2
396,161 - TX73_001890 0.58 +0.1
396,209 - TX73_001890 0.63 +0.2
396,211 + TX73_001890 0.64 +0.0
396,235 + TX73_001890 0.66 -0.3
396,243 - TX73_001890 0.67 -0.1
396,243 - TX73_001890 0.67 +0.2
396,244 + TX73_001890 0.67 +0.6
396,263 + TX73_001890 0.69 -0.7
396,284 + TX73_001890 0.72 +1.1
396,293 - TX73_001890 0.73 -0.5
396,294 - TX73_001890 0.73 -0.6
396,310 - TX73_001890 0.75 -0.1
396,320 - TX73_001890 0.76 -0.8
396,349 - TX73_001890 0.79 -0.4
396,362 + TX73_001890 0.80 +0.6
396,394 + TX73_001890 0.84 +0.0
396,402 - TX73_001890 0.85 +0.8
396,402 - TX73_001890 0.85 +0.1
396,432 + TX73_001890 0.88 +0.1
396,438 + TX73_001890 0.89 +0.5
396,438 + TX73_001890 0.89 -0.4
396,468 + -0.4
396,468 + -0.1
396,468 + +0.1
396,476 - -0.1
396,476 - +0.3
396,476 - +0.6
396,489 + -0.3
396,489 + -0.2
396,493 - +0.2
396,497 - -0.1
396,527 + -0.2
396,570 + +0.1
396,580 + +0.2
396,587 + -1.0
396,588 - +0.0
396,588 - +0.5
396,588 - -0.9
396,590 - -0.1
396,594 + -0.1
396,595 - +0.1
396,595 - -0.5
396,621 - -0.2
396,644 + -0.3
396,644 + -1.0
396,646 - +0.8
396,652 - +1.2
396,652 - +1.3
396,679 - TX73_001895 0.12 -0.1
396,710 + TX73_001895 0.20 -0.1
396,718 - TX73_001895 0.23 -0.8
396,718 - TX73_001895 0.23 -0.5
396,739 - TX73_001895 0.28 -0.2
396,773 + TX73_001895 0.38 +0.2
396,795 + TX73_001895 0.44 -0.7
396,815 + TX73_001895 0.49 -1.2
396,823 - TX73_001895 0.52 -0.5
396,823 - TX73_001895 0.52 +0.8
396,845 + TX73_001895 0.58 +0.3
396,890 + TX73_001895 0.70 +0.6
396,890 + TX73_001895 0.70 -0.3
396,896 + TX73_001895 0.72 -0.3
396,965 - +0.3
396,971 + -1.3
396,976 - +0.1
397,002 - -0.4
397,052 - +0.1
397,064 + +1.1
397,074 + -0.0
397,112 - -0.1
397,123 + -1.4
397,123 + +0.7
397,142 - -0.1
397,171 + -0.3
397,176 + -1.0
397,184 - -0.2
397,185 + -0.4
397,185 + +0.7
397,190 + +0.2
397,190 + +0.4
397,191 - -1.1
397,193 - +0.5
397,193 - -0.0
397,193 - -0.1
397,193 - -0.4
397,193 - -0.8
397,213 + +0.1
397,218 + -0.3
397,218 + +0.4
397,253 + -3.2
397,261 - -1.4
397,261 - -2.1
397,266 + -0.1
397,271 - +0.1
397,273 - -2.7

Or see this region's nucleotide sequence