Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_003025

Experiment: 2-(Methylthio)ethanol sulfur source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_003020 and TX73_003025 are separated by 191 nucleotidesTX73_003025 and TX73_003030 are separated by 22 nucleotides TX73_003020: TX73_003020 - ATP-binding protein, at 645,699 to 648,440 _003020 TX73_003025: TX73_003025 - Tex family protein, at 648,632 to 650,968 _003025 TX73_003030: TX73_003030 - chromate efflux transporter, at 650,991 to 652,214 _003030 Position (kb) 648 649 650 651Strain fitness (log2 ratio) -2 -1 0 1 2at 647.642 kb on + strand, within TX73_003020at 647.657 kb on + strand, within TX73_003020at 647.660 kb on - strand, within TX73_003020at 647.693 kb on + strand, within TX73_003020at 647.695 kb on - strand, within TX73_003020at 647.701 kb on - strand, within TX73_003020at 647.723 kb on - strand, within TX73_003020at 647.726 kb on + strand, within TX73_003020at 647.736 kb on + strand, within TX73_003020at 647.749 kb on - strand, within TX73_003020at 647.759 kb on - strand, within TX73_003020at 647.768 kb on - strand, within TX73_003020at 647.887 kb on + strand, within TX73_003020at 647.887 kb on + strand, within TX73_003020at 647.895 kb on - strand, within TX73_003020at 647.895 kb on - strand, within TX73_003020at 647.904 kb on + strand, within TX73_003020at 647.904 kb on + strand, within TX73_003020at 647.912 kb on - strand, within TX73_003020at 647.912 kb on - strand, within TX73_003020at 647.922 kb on - strand, within TX73_003020at 647.935 kb on + strand, within TX73_003020at 647.950 kb on - strand, within TX73_003020at 647.995 kb on - strand, within TX73_003020at 648.023 kb on - strand, within TX73_003020at 648.119 kb on - strand, within TX73_003020at 648.133 kb on - strand, within TX73_003020at 648.181 kb on - strandat 648.182 kb on - strandat 648.208 kb on - strandat 648.381 kb on + strandat 648.389 kb on - strandat 648.492 kb on - strandat 648.519 kb on + strandat 648.596 kb on + strandat 648.604 kb on + strandat 648.604 kb on + strandat 648.716 kb on + strandat 648.735 kb on - strandat 648.789 kb on - strandat 648.827 kb on - strandat 648.924 kb on - strand, within TX73_003025at 648.990 kb on + strand, within TX73_003025at 649.042 kb on + strand, within TX73_003025at 649.066 kb on + strand, within TX73_003025at 649.066 kb on + strand, within TX73_003025at 649.074 kb on - strand, within TX73_003025at 649.111 kb on - strand, within TX73_003025at 649.140 kb on + strand, within TX73_003025at 649.154 kb on + strand, within TX73_003025at 649.167 kb on - strand, within TX73_003025at 649.334 kb on - strand, within TX73_003025at 649.451 kb on - strand, within TX73_003025at 649.490 kb on - strand, within TX73_003025at 649.651 kb on + strand, within TX73_003025at 649.758 kb on + strand, within TX73_003025at 649.815 kb on + strand, within TX73_003025at 649.822 kb on + strand, within TX73_003025at 649.845 kb on - strand, within TX73_003025at 649.845 kb on - strand, within TX73_003025at 649.862 kb on - strand, within TX73_003025at 649.872 kb on - strand, within TX73_003025at 650.041 kb on + strand, within TX73_003025at 650.083 kb on + strand, within TX73_003025at 650.093 kb on + strand, within TX73_003025at 650.101 kb on - strand, within TX73_003025at 650.123 kb on + strand, within TX73_003025at 650.239 kb on + strand, within TX73_003025at 650.247 kb on - strand, within TX73_003025at 650.444 kb on - strand, within TX73_003025at 650.495 kb on - strand, within TX73_003025at 650.528 kb on + strand, within TX73_003025at 650.651 kb on + strand, within TX73_003025at 650.659 kb on - strand, within TX73_003025at 650.679 kb on - strand, within TX73_003025at 650.740 kb on + strandat 650.775 kb on - strandat 650.788 kb on - strandat 650.791 kb on + strandat 650.809 kb on - strandat 650.825 kb on + strandat 650.856 kb on + strandat 650.894 kb on + strandat 650.894 kb on + strandat 650.902 kb on - strandat 650.929 kb on + strandat 650.929 kb on + strandat 650.943 kb on + strandat 650.950 kb on - strandat 650.953 kb on + strandat 650.984 kb on + strandat 651.002 kb on - strandat 651.002 kb on - strandat 651.002 kb on - strandat 651.055 kb on - strandat 651.094 kb on + strandat 651.121 kb on + strand, within TX73_003030at 651.126 kb on + strand, within TX73_003030at 651.126 kb on + strand, within TX73_003030at 651.126 kb on + strand, within TX73_003030at 651.129 kb on - strand, within TX73_003030at 651.131 kb on + strand, within TX73_003030at 651.134 kb on - strand, within TX73_003030at 651.136 kb on + strand, within TX73_003030at 651.136 kb on + strand, within TX73_003030at 651.139 kb on - strand, within TX73_003030at 651.141 kb on + strand, within TX73_003030at 651.141 kb on + strand, within TX73_003030at 651.141 kb on + strand, within TX73_003030at 651.146 kb on + strand, within TX73_003030at 651.146 kb on - strand, within TX73_003030at 651.149 kb on - strand, within TX73_003030at 651.149 kb on - strand, within TX73_003030at 651.149 kb on - strand, within TX73_003030at 651.154 kb on - strand, within TX73_003030at 651.154 kb on - strand, within TX73_003030at 651.213 kb on - strand, within TX73_003030at 651.221 kb on - strand, within TX73_003030at 651.226 kb on + strand, within TX73_003030at 651.259 kb on - strand, within TX73_003030at 651.269 kb on + strand, within TX73_003030at 651.346 kb on + strand, within TX73_003030at 651.372 kb on - strand, within TX73_003030at 651.419 kb on - strand, within TX73_003030at 651.444 kb on - strand, within TX73_003030at 651.452 kb on + strand, within TX73_003030at 651.455 kb on + strand, within TX73_003030at 651.463 kb on - strand, within TX73_003030at 651.533 kb on + strand, within TX73_003030at 651.571 kb on + strand, within TX73_003030at 651.579 kb on - strand, within TX73_003030at 651.581 kb on - strand, within TX73_003030at 651.622 kb on + strand, within TX73_003030at 651.638 kb on - strand, within TX73_003030at 651.638 kb on - strand, within TX73_003030at 651.693 kb on + strand, within TX73_003030at 651.712 kb on + strand, within TX73_003030at 651.712 kb on + strand, within TX73_003030at 651.720 kb on - strand, within TX73_003030at 651.720 kb on - strand, within TX73_003030at 651.777 kb on - strand, within TX73_003030at 651.789 kb on + strand, within TX73_003030at 651.793 kb on - strand, within TX73_003030at 651.828 kb on - strand, within TX73_003030at 651.837 kb on + strand, within TX73_003030at 651.837 kb on + strand, within TX73_003030at 651.865 kb on - strand, within TX73_003030at 651.897 kb on - strand, within TX73_003030at 651.944 kb on + strand, within TX73_003030

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-(Methylthio)ethanol sulfur source
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647,642 + TX73_003020 0.71 +0.1
647,657 + TX73_003020 0.71 -0.0
647,660 - TX73_003020 0.72 +0.6
647,693 + TX73_003020 0.73 -0.7
647,695 - TX73_003020 0.73 +0.8
647,701 - TX73_003020 0.73 -0.0
647,723 - TX73_003020 0.74 +0.4
647,726 + TX73_003020 0.74 -0.3
647,736 + TX73_003020 0.74 +0.1
647,749 - TX73_003020 0.75 +1.2
647,759 - TX73_003020 0.75 -0.3
647,768 - TX73_003020 0.75 +0.3
647,887 + TX73_003020 0.80 +0.7
647,887 + TX73_003020 0.80 -0.4
647,895 - TX73_003020 0.80 -0.5
647,895 - TX73_003020 0.80 -1.1
647,904 + TX73_003020 0.80 -0.8
647,904 + TX73_003020 0.80 -0.3
647,912 - TX73_003020 0.81 -0.0
647,912 - TX73_003020 0.81 +0.3
647,922 - TX73_003020 0.81 +1.1
647,935 + TX73_003020 0.82 -0.6
647,950 - TX73_003020 0.82 +0.4
647,995 - TX73_003020 0.84 -1.0
648,023 - TX73_003020 0.85 -0.3
648,119 - TX73_003020 0.88 -0.1
648,133 - TX73_003020 0.89 -0.7
648,181 - +0.3
648,182 - -1.0
648,208 - -0.5
648,381 + -0.0
648,389 - -0.0
648,492 - -1.0
648,519 + -0.0
648,596 + +0.2
648,604 + +0.3
648,604 + -0.2
648,716 + -0.1
648,735 - -0.8
648,789 - -0.3
648,827 - +0.6
648,924 - TX73_003025 0.12 -2.2
648,990 + TX73_003025 0.15 -0.4
649,042 + TX73_003025 0.18 -1.1
649,066 + TX73_003025 0.19 +2.3
649,066 + TX73_003025 0.19 -1.6
649,074 - TX73_003025 0.19 -0.5
649,111 - TX73_003025 0.20 +1.3
649,140 + TX73_003025 0.22 +0.4
649,154 + TX73_003025 0.22 +0.4
649,167 - TX73_003025 0.23 -0.2
649,334 - TX73_003025 0.30 -0.2
649,451 - TX73_003025 0.35 -0.7
649,490 - TX73_003025 0.37 +1.2
649,651 + TX73_003025 0.44 +1.5
649,758 + TX73_003025 0.48 -0.2
649,815 + TX73_003025 0.51 +0.8
649,822 + TX73_003025 0.51 +0.6
649,845 - TX73_003025 0.52 -0.2
649,845 - TX73_003025 0.52 +0.6
649,862 - TX73_003025 0.53 -0.6
649,872 - TX73_003025 0.53 +0.6
650,041 + TX73_003025 0.60 +0.3
650,083 + TX73_003025 0.62 -0.8
650,093 + TX73_003025 0.63 -1.3
650,101 - TX73_003025 0.63 -0.0
650,123 + TX73_003025 0.64 +0.3
650,239 + TX73_003025 0.69 -0.7
650,247 - TX73_003025 0.69 +0.1
650,444 - TX73_003025 0.78 +0.6
650,495 - TX73_003025 0.80 +1.6
650,528 + TX73_003025 0.81 -0.2
650,651 + TX73_003025 0.86 +0.6
650,659 - TX73_003025 0.87 +0.6
650,679 - TX73_003025 0.88 +0.6
650,740 + -0.2
650,775 - -0.2
650,788 - -0.8
650,791 + +0.2
650,809 - -2.7
650,825 + +0.3
650,856 + -1.5
650,894 + +0.9
650,894 + +0.7
650,902 - +0.7
650,929 + +0.2
650,929 + -0.2
650,943 + +0.1
650,950 - +0.7
650,953 + +2.1
650,984 + -0.2
651,002 - -0.9
651,002 - -1.1
651,002 - -0.2
651,055 - -0.8
651,094 + -0.2
651,121 + TX73_003030 0.11 -0.6
651,126 + TX73_003030 0.11 +0.8
651,126 + TX73_003030 0.11 -0.3
651,126 + TX73_003030 0.11 -0.4
651,129 - TX73_003030 0.11 +0.1
651,131 + TX73_003030 0.11 -0.5
651,134 - TX73_003030 0.12 -0.6
651,136 + TX73_003030 0.12 -0.7
651,136 + TX73_003030 0.12 -0.3
651,139 - TX73_003030 0.12 -0.5
651,141 + TX73_003030 0.12 -0.1
651,141 + TX73_003030 0.12 +0.2
651,141 + TX73_003030 0.12 +0.1
651,146 + TX73_003030 0.13 +1.3
651,146 - TX73_003030 0.13 +0.5
651,149 - TX73_003030 0.13 +0.6
651,149 - TX73_003030 0.13 +0.2
651,149 - TX73_003030 0.13 +0.2
651,154 - TX73_003030 0.13 +0.2
651,154 - TX73_003030 0.13 +0.8
651,213 - TX73_003030 0.18 +0.9
651,221 - TX73_003030 0.19 -0.5
651,226 + TX73_003030 0.19 +0.4
651,259 - TX73_003030 0.22 +0.1
651,269 + TX73_003030 0.23 +0.0
651,346 + TX73_003030 0.29 -1.5
651,372 - TX73_003030 0.31 +0.4
651,419 - TX73_003030 0.35 +0.4
651,444 - TX73_003030 0.37 +0.0
651,452 + TX73_003030 0.38 -0.4
651,455 + TX73_003030 0.38 +0.9
651,463 - TX73_003030 0.39 -0.2
651,533 + TX73_003030 0.44 +0.8
651,571 + TX73_003030 0.47 -0.7
651,579 - TX73_003030 0.48 -0.4
651,581 - TX73_003030 0.48 -0.8
651,622 + TX73_003030 0.52 +0.5
651,638 - TX73_003030 0.53 +0.3
651,638 - TX73_003030 0.53 -0.7
651,693 + TX73_003030 0.57 +0.5
651,712 + TX73_003030 0.59 -1.4
651,712 + TX73_003030 0.59 +1.4
651,720 - TX73_003030 0.60 -0.5
651,720 - TX73_003030 0.60 -0.1
651,777 - TX73_003030 0.64 +0.3
651,789 + TX73_003030 0.65 -0.0
651,793 - TX73_003030 0.66 +0.3
651,828 - TX73_003030 0.68 -0.4
651,837 + TX73_003030 0.69 +0.3
651,837 + TX73_003030 0.69 -0.4
651,865 - TX73_003030 0.71 -0.2
651,897 - TX73_003030 0.74 -0.2
651,944 + TX73_003030 0.78 -0.3

Or see this region's nucleotide sequence