Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_023640

Experiment: sulfur source control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_023635 and TX73_023640 are separated by 430 nucleotidesTX73_023640 and TX73_023645 are separated by 123 nucleotides TX73_023635: TX73_023635 - tyrosine-type recombinase/integrase, at 5,127,999 to 5,129,381 _023635 TX73_023640: TX73_023640 - hypothetical protein, at 5,129,812 to 5,130,201 _023640 TX73_023645: TX73_023645 - DUF2130 domain-containing protein, at 5,130,325 to 5,131,614 _023645 Position (kb) 5129 5130 5131Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5128.814 kb on - strand, within TX73_023635at 5128.894 kb on - strand, within TX73_023635at 5128.935 kb on + strand, within TX73_023635at 5128.949 kb on + strand, within TX73_023635at 5128.959 kb on - strand, within TX73_023635at 5129.037 kb on + strand, within TX73_023635at 5129.047 kb on + strand, within TX73_023635at 5129.126 kb on - strand, within TX73_023635at 5129.176 kb on - strand, within TX73_023635at 5129.225 kb on + strand, within TX73_023635at 5129.225 kb on + strand, within TX73_023635at 5129.248 kb on - strandat 5129.261 kb on + strandat 5129.279 kb on - strandat 5129.394 kb on - strandat 5129.396 kb on + strandat 5129.406 kb on - strandat 5129.434 kb on + strandat 5129.440 kb on - strandat 5129.442 kb on + strandat 5129.442 kb on + strandat 5129.445 kb on - strandat 5129.450 kb on - strandat 5129.487 kb on + strandat 5129.495 kb on - strandat 5129.577 kb on + strandat 5129.585 kb on + strandat 5129.620 kb on - strandat 5129.627 kb on + strandat 5129.635 kb on - strandat 5129.635 kb on - strandat 5129.654 kb on - strandat 5129.669 kb on - strandat 5129.685 kb on + strandat 5129.695 kb on + strandat 5129.701 kb on + strandat 5129.707 kb on + strandat 5129.715 kb on - strandat 5129.787 kb on + strandat 5129.793 kb on + strandat 5129.813 kb on + strandat 5129.840 kb on - strandat 5129.850 kb on + strandat 5129.858 kb on - strand, within TX73_023640at 5129.895 kb on - strand, within TX73_023640at 5129.898 kb on + strand, within TX73_023640at 5129.901 kb on - strand, within TX73_023640at 5129.946 kb on + strand, within TX73_023640at 5129.946 kb on + strand, within TX73_023640at 5129.973 kb on + strand, within TX73_023640at 5129.988 kb on + strand, within TX73_023640at 5130.022 kb on + strand, within TX73_023640at 5130.041 kb on + strand, within TX73_023640at 5130.043 kb on + strand, within TX73_023640at 5130.043 kb on + strand, within TX73_023640at 5130.043 kb on + strand, within TX73_023640at 5130.051 kb on - strand, within TX73_023640at 5130.051 kb on - strand, within TX73_023640at 5130.051 kb on - strand, within TX73_023640at 5130.066 kb on - strand, within TX73_023640at 5130.069 kb on + strand, within TX73_023640at 5130.069 kb on + strand, within TX73_023640at 5130.069 kb on + strand, within TX73_023640at 5130.069 kb on + strand, within TX73_023640at 5130.075 kb on - strand, within TX73_023640at 5130.122 kb on + strand, within TX73_023640at 5130.221 kb on - strandat 5130.236 kb on - strandat 5130.297 kb on + strandat 5130.297 kb on + strandat 5130.304 kb on - strandat 5130.319 kb on + strandat 5130.321 kb on + strandat 5130.334 kb on - strandat 5130.336 kb on + strandat 5130.354 kb on - strandat 5130.378 kb on - strandat 5130.407 kb on - strandat 5130.414 kb on + strandat 5130.414 kb on + strandat 5130.422 kb on - strandat 5130.422 kb on - strandat 5130.445 kb on + strandat 5130.445 kb on + strandat 5130.445 kb on + strandat 5130.458 kb on - strand, within TX73_023645at 5130.458 kb on - strand, within TX73_023645at 5130.458 kb on - strand, within TX73_023645at 5130.512 kb on - strand, within TX73_023645at 5130.520 kb on + strand, within TX73_023645at 5130.543 kb on - strand, within TX73_023645at 5130.548 kb on - strand, within TX73_023645at 5130.548 kb on - strand, within TX73_023645at 5130.585 kb on + strand, within TX73_023645at 5130.594 kb on - strand, within TX73_023645at 5130.630 kb on - strand, within TX73_023645at 5130.632 kb on + strand, within TX73_023645at 5130.642 kb on + strand, within TX73_023645at 5130.648 kb on - strand, within TX73_023645at 5130.649 kb on + strand, within TX73_023645at 5130.665 kb on + strand, within TX73_023645at 5130.681 kb on + strand, within TX73_023645at 5130.683 kb on - strand, within TX73_023645at 5130.698 kb on - strand, within TX73_023645at 5130.723 kb on + strand, within TX73_023645at 5130.751 kb on - strand, within TX73_023645at 5130.768 kb on + strand, within TX73_023645at 5130.768 kb on + strand, within TX73_023645at 5130.769 kb on + strand, within TX73_023645at 5130.776 kb on - strand, within TX73_023645at 5130.831 kb on + strand, within TX73_023645at 5130.831 kb on + strand, within TX73_023645at 5130.886 kb on + strand, within TX73_023645at 5130.902 kb on - strand, within TX73_023645at 5130.907 kb on - strand, within TX73_023645at 5130.916 kb on - strand, within TX73_023645at 5130.919 kb on - strand, within TX73_023645at 5130.934 kb on + strand, within TX73_023645at 5130.949 kb on + strand, within TX73_023645at 5130.981 kb on + strand, within TX73_023645at 5130.995 kb on - strand, within TX73_023645at 5130.995 kb on - strand, within TX73_023645at 5130.995 kb on - strand, within TX73_023645at 5131.024 kb on + strand, within TX73_023645at 5131.031 kb on + strand, within TX73_023645at 5131.043 kb on + strand, within TX73_023645at 5131.108 kb on - strand, within TX73_023645at 5131.137 kb on + strand, within TX73_023645at 5131.142 kb on + strand, within TX73_023645at 5131.143 kb on + strand, within TX73_023645at 5131.145 kb on - strand, within TX73_023645at 5131.145 kb on - strand, within TX73_023645at 5131.151 kb on - strand, within TX73_023645at 5131.151 kb on - strand, within TX73_023645at 5131.180 kb on + strand, within TX73_023645at 5131.190 kb on - strand, within TX73_023645at 5131.190 kb on - strand, within TX73_023645at 5131.190 kb on - strand, within TX73_023645at 5131.197 kb on - strand, within TX73_023645at 5131.199 kb on + strand, within TX73_023645

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Per-strain Table

Position Strand Gene LocusTag Fraction sulfur source control
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5,128,814 - TX73_023635 0.59 +0.1
5,128,894 - TX73_023635 0.65 -0.3
5,128,935 + TX73_023635 0.68 -0.4
5,128,949 + TX73_023635 0.69 +0.1
5,128,959 - TX73_023635 0.69 -0.0
5,129,037 + TX73_023635 0.75 -1.1
5,129,047 + TX73_023635 0.76 -0.5
5,129,126 - TX73_023635 0.81 -0.4
5,129,176 - TX73_023635 0.85 +0.7
5,129,225 + TX73_023635 0.89 -0.1
5,129,225 + TX73_023635 0.89 +0.4
5,129,248 - +0.2
5,129,261 + -0.5
5,129,279 - +1.0
5,129,394 - +0.4
5,129,396 + -1.0
5,129,406 - -1.3
5,129,434 + -0.4
5,129,440 - -1.5
5,129,442 + -0.9
5,129,442 + +0.7
5,129,445 - -0.4
5,129,450 - -1.4
5,129,487 + -0.7
5,129,495 - -0.4
5,129,577 + +1.3
5,129,585 + +0.2
5,129,620 - -0.9
5,129,627 + +1.8
5,129,635 - +0.2
5,129,635 - -0.5
5,129,654 - -0.1
5,129,669 - +0.6
5,129,685 + -1.0
5,129,695 + -0.1
5,129,701 + -1.2
5,129,707 + -1.3
5,129,715 - -1.4
5,129,787 + +0.2
5,129,793 + +0.3
5,129,813 + -0.5
5,129,840 - +0.0
5,129,850 + +0.1
5,129,858 - TX73_023640 0.12 +1.2
5,129,895 - TX73_023640 0.21 +0.6
5,129,898 + TX73_023640 0.22 +0.2
5,129,901 - TX73_023640 0.23 +0.1
5,129,946 + TX73_023640 0.34 +0.6
5,129,946 + TX73_023640 0.34 +0.5
5,129,973 + TX73_023640 0.41 -1.3
5,129,988 + TX73_023640 0.45 -0.5
5,130,022 + TX73_023640 0.54 +1.0
5,130,041 + TX73_023640 0.59 +0.2
5,130,043 + TX73_023640 0.59 +0.6
5,130,043 + TX73_023640 0.59 +1.0
5,130,043 + TX73_023640 0.59 -1.8
5,130,051 - TX73_023640 0.61 +0.1
5,130,051 - TX73_023640 0.61 -0.3
5,130,051 - TX73_023640 0.61 +0.3
5,130,066 - TX73_023640 0.65 -2.6
5,130,069 + TX73_023640 0.66 -0.2
5,130,069 + TX73_023640 0.66 +0.5
5,130,069 + TX73_023640 0.66 +0.4
5,130,069 + TX73_023640 0.66 +0.7
5,130,075 - TX73_023640 0.67 +0.5
5,130,122 + TX73_023640 0.79 +1.2
5,130,221 - +0.3
5,130,236 - -0.6
5,130,297 + +0.1
5,130,297 + +0.1
5,130,304 - -0.1
5,130,319 + -0.3
5,130,321 + -0.5
5,130,334 - -0.1
5,130,336 + +0.4
5,130,354 - -0.3
5,130,378 - +1.6
5,130,407 - -0.9
5,130,414 + -2.7
5,130,414 + -0.8
5,130,422 - -0.3
5,130,422 - +0.1
5,130,445 + +0.6
5,130,445 + +0.3
5,130,445 + +0.2
5,130,458 - TX73_023645 0.10 -0.6
5,130,458 - TX73_023645 0.10 -0.5
5,130,458 - TX73_023645 0.10 +0.0
5,130,512 - TX73_023645 0.14 -0.0
5,130,520 + TX73_023645 0.15 +0.6
5,130,543 - TX73_023645 0.17 -0.7
5,130,548 - TX73_023645 0.17 -0.2
5,130,548 - TX73_023645 0.17 -0.9
5,130,585 + TX73_023645 0.20 +1.2
5,130,594 - TX73_023645 0.21 +0.2
5,130,630 - TX73_023645 0.24 -0.1
5,130,632 + TX73_023645 0.24 +0.6
5,130,642 + TX73_023645 0.25 -0.3
5,130,648 - TX73_023645 0.25 +0.2
5,130,649 + TX73_023645 0.25 -0.3
5,130,665 + TX73_023645 0.26 -0.5
5,130,681 + TX73_023645 0.28 -0.7
5,130,683 - TX73_023645 0.28 -0.0
5,130,698 - TX73_023645 0.29 -0.7
5,130,723 + TX73_023645 0.31 -0.2
5,130,751 - TX73_023645 0.33 +0.2
5,130,768 + TX73_023645 0.34 -2.9
5,130,768 + TX73_023645 0.34 -0.3
5,130,769 + TX73_023645 0.34 -0.7
5,130,776 - TX73_023645 0.35 -0.2
5,130,831 + TX73_023645 0.39 +0.8
5,130,831 + TX73_023645 0.39 +0.6
5,130,886 + TX73_023645 0.43 +0.9
5,130,902 - TX73_023645 0.45 +0.2
5,130,907 - TX73_023645 0.45 -0.4
5,130,916 - TX73_023645 0.46 +0.3
5,130,919 - TX73_023645 0.46 +0.2
5,130,934 + TX73_023645 0.47 +0.4
5,130,949 + TX73_023645 0.48 -0.3
5,130,981 + TX73_023645 0.51 +1.2
5,130,995 - TX73_023645 0.52 +0.4
5,130,995 - TX73_023645 0.52 +0.5
5,130,995 - TX73_023645 0.52 -1.1
5,131,024 + TX73_023645 0.54 +0.5
5,131,031 + TX73_023645 0.55 -0.3
5,131,043 + TX73_023645 0.56 -1.8
5,131,108 - TX73_023645 0.61 -0.3
5,131,137 + TX73_023645 0.63 +0.0
5,131,142 + TX73_023645 0.63 -1.0
5,131,143 + TX73_023645 0.63 +0.7
5,131,145 - TX73_023645 0.64 -0.0
5,131,145 - TX73_023645 0.64 -1.4
5,131,151 - TX73_023645 0.64 +0.5
5,131,151 - TX73_023645 0.64 -1.6
5,131,180 + TX73_023645 0.66 +0.2
5,131,190 - TX73_023645 0.67 +0.6
5,131,190 - TX73_023645 0.67 +0.0
5,131,190 - TX73_023645 0.67 +0.0
5,131,197 - TX73_023645 0.68 +1.4
5,131,199 + TX73_023645 0.68 +0.5

Or see this region's nucleotide sequence