Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_000610

Experiment: sulfur source control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_000595 and TX73_000600 overlap by 1 nucleotidesTX73_000600 and TX73_000605 overlap by 5 nucleotidesTX73_000605 and TX73_000610 are separated by 25 nucleotidesTX73_000610 and TX73_000615 are separated by 4 nucleotidesTX73_000615 and TX73_000620 are separated by 7 nucleotides TX73_000595: TX73_000595 - NAD-dependent epimerase/dehydratase family protein, at 132,242 to 132,388 _000595 TX73_000600: TX73_000600 - GDP-mannose 4,6-dehydratase, at 132,388 to 132,906 _000600 TX73_000605: TX73_000605 - GDP-mannose 4,6-dehydratase, at 132,902 to 133,303 _000605 TX73_000610: TX73_000610 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 133,329 to 133,886 _000610 TX73_000615: TX73_000615 - dTDP-4-dehydrorhamnose reductase, at 133,891 to 134,784 _000615 TX73_000620: TX73_000620 - glucose-1-phosphate thymidylyltransferase RfbA, at 134,792 to 135,661 _000620 Position (kb) 133 134Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 132.331 kb on - strand, within TX73_000595at 132.337 kb on - strand, within TX73_000595at 132.344 kb on + strand, within TX73_000595at 132.394 kb on + strandat 132.394 kb on + strandat 132.400 kb on - strandat 132.402 kb on - strandat 132.405 kb on + strandat 132.418 kb on + strandat 132.425 kb on + strandat 132.425 kb on + strandat 132.426 kb on - strandat 132.426 kb on - strandat 132.431 kb on + strandat 132.433 kb on - strandat 132.433 kb on - strandat 132.433 kb on - strandat 132.439 kb on - strandat 132.463 kb on + strand, within TX73_000600at 132.465 kb on + strand, within TX73_000600at 132.471 kb on - strand, within TX73_000600at 132.510 kb on + strand, within TX73_000600at 132.512 kb on + strand, within TX73_000600at 132.518 kb on + strand, within TX73_000600at 132.525 kb on - strand, within TX73_000600at 132.530 kb on + strand, within TX73_000600at 132.534 kb on + strand, within TX73_000600at 132.542 kb on - strand, within TX73_000600at 132.551 kb on - strand, within TX73_000600at 132.561 kb on + strand, within TX73_000600at 132.569 kb on - strand, within TX73_000600at 132.609 kb on + strand, within TX73_000600at 132.612 kb on + strand, within TX73_000600at 132.617 kb on + strand, within TX73_000600at 132.620 kb on - strand, within TX73_000600at 132.628 kb on + strand, within TX73_000600at 132.634 kb on - strand, within TX73_000600at 132.651 kb on - strand, within TX73_000600at 132.652 kb on - strand, within TX73_000600at 132.686 kb on + strand, within TX73_000600at 132.750 kb on + strand, within TX73_000600at 132.753 kb on - strand, within TX73_000600at 132.758 kb on - strand, within TX73_000600at 132.781 kb on + strand, within TX73_000600at 132.829 kb on - strand, within TX73_000600at 132.851 kb on - strand, within TX73_000600at 132.858 kb on + strandat 132.858 kb on + strandat 132.866 kb on - strandat 132.874 kb on - strandat 132.881 kb on + strandat 132.889 kb on - strandat 132.889 kb on - strandat 133.026 kb on - strand, within TX73_000605at 133.080 kb on + strand, within TX73_000605at 133.164 kb on - strand, within TX73_000605at 133.215 kb on - strand, within TX73_000605at 133.230 kb on - strand, within TX73_000605at 133.260 kb on + strand, within TX73_000605at 133.260 kb on + strand, within TX73_000605at 133.265 kb on + strandat 133.268 kb on - strandat 133.268 kb on - strandat 133.268 kb on - strandat 133.342 kb on + strandat 133.385 kb on - strand, within TX73_000610at 133.426 kb on - strand, within TX73_000610at 133.523 kb on - strand, within TX73_000610at 133.541 kb on + strand, within TX73_000610at 133.549 kb on - strand, within TX73_000610at 133.608 kb on - strand, within TX73_000610at 133.620 kb on - strand, within TX73_000610at 133.770 kb on + strand, within TX73_000610at 133.770 kb on + strand, within TX73_000610at 133.770 kb on + strand, within TX73_000610at 133.788 kb on - strand, within TX73_000610at 133.804 kb on - strand, within TX73_000610at 133.899 kb on - strandat 133.951 kb on + strandat 133.988 kb on - strand, within TX73_000615at 134.021 kb on + strand, within TX73_000615at 134.024 kb on - strand, within TX73_000615at 134.034 kb on - strand, within TX73_000615at 134.044 kb on - strand, within TX73_000615at 134.088 kb on + strand, within TX73_000615at 134.091 kb on - strand, within TX73_000615at 134.099 kb on + strand, within TX73_000615at 134.200 kb on + strand, within TX73_000615at 134.237 kb on - strand, within TX73_000615at 134.247 kb on - strand, within TX73_000615at 134.248 kb on + strand, within TX73_000615at 134.298 kb on + strand, within TX73_000615at 134.323 kb on - strand, within TX73_000615at 134.333 kb on + strand, within TX73_000615at 134.333 kb on + strand, within TX73_000615at 134.341 kb on - strand, within TX73_000615at 134.341 kb on - strand, within TX73_000615at 134.377 kb on + strand, within TX73_000615at 134.416 kb on + strand, within TX73_000615at 134.467 kb on + strand, within TX73_000615at 134.563 kb on - strand, within TX73_000615at 134.589 kb on + strand, within TX73_000615at 134.745 kb on + strandat 134.745 kb on + strandat 134.748 kb on - strandat 134.823 kb on + strandat 134.823 kb on + strandat 134.831 kb on - strandat 134.831 kb on - strandat 134.852 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sulfur source control
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132,331 - TX73_000595 0.61 +0.4
132,337 - TX73_000595 0.65 -1.0
132,344 + TX73_000595 0.69 -0.2
132,394 + +0.0
132,394 + +0.7
132,400 - -0.2
132,402 - -0.8
132,405 + +0.2
132,418 + +0.6
132,425 + -3.4
132,425 + +0.4
132,426 - +0.1
132,426 - -1.7
132,431 + -0.7
132,433 - -0.6
132,433 - +0.9
132,433 - -0.1
132,439 - -0.9
132,463 + TX73_000600 0.14 +0.2
132,465 + TX73_000600 0.15 -0.2
132,471 - TX73_000600 0.16 +0.2
132,510 + TX73_000600 0.24 +0.2
132,512 + TX73_000600 0.24 -0.5
132,518 + TX73_000600 0.25 -0.1
132,525 - TX73_000600 0.26 +0.8
132,530 + TX73_000600 0.27 +0.9
132,534 + TX73_000600 0.28 +0.1
132,542 - TX73_000600 0.30 +0.5
132,551 - TX73_000600 0.31 +0.8
132,561 + TX73_000600 0.33 +0.4
132,569 - TX73_000600 0.35 -0.2
132,609 + TX73_000600 0.43 -1.2
132,612 + TX73_000600 0.43 +0.1
132,617 + TX73_000600 0.44 -0.1
132,620 - TX73_000600 0.45 +0.8
132,628 + TX73_000600 0.46 +0.6
132,634 - TX73_000600 0.47 +0.4
132,651 - TX73_000600 0.51 +1.1
132,652 - TX73_000600 0.51 -1.2
132,686 + TX73_000600 0.57 +1.2
132,750 + TX73_000600 0.70 -0.1
132,753 - TX73_000600 0.70 +0.4
132,758 - TX73_000600 0.71 -0.2
132,781 + TX73_000600 0.76 +0.6
132,829 - TX73_000600 0.85 +0.2
132,851 - TX73_000600 0.89 +1.7
132,858 + -0.1
132,858 + -0.9
132,866 - +0.3
132,874 - -0.1
132,881 + -1.2
132,889 - +0.9
132,889 - -0.3
133,026 - TX73_000605 0.31 -0.7
133,080 + TX73_000605 0.44 +0.8
133,164 - TX73_000605 0.65 -1.0
133,215 - TX73_000605 0.78 +0.4
133,230 - TX73_000605 0.82 +0.8
133,260 + TX73_000605 0.89 -0.2
133,260 + TX73_000605 0.89 +0.1
133,265 + +0.6
133,268 - +0.4
133,268 - -0.0
133,268 - +0.3
133,342 + -1.8
133,385 - TX73_000610 0.10 -0.0
133,426 - TX73_000610 0.17 +0.1
133,523 - TX73_000610 0.35 -0.3
133,541 + TX73_000610 0.38 +0.5
133,549 - TX73_000610 0.39 -1.8
133,608 - TX73_000610 0.50 -0.6
133,620 - TX73_000610 0.52 -0.8
133,770 + TX73_000610 0.79 -0.3
133,770 + TX73_000610 0.79 +0.3
133,770 + TX73_000610 0.79 -0.7
133,788 - TX73_000610 0.82 -3.0
133,804 - TX73_000610 0.85 +0.2
133,899 - -0.7
133,951 + +1.3
133,988 - TX73_000615 0.11 -0.5
134,021 + TX73_000615 0.15 -1.5
134,024 - TX73_000615 0.15 -2.1
134,034 - TX73_000615 0.16 -0.0
134,044 - TX73_000615 0.17 -1.3
134,088 + TX73_000615 0.22 +0.0
134,091 - TX73_000615 0.22 -1.1
134,099 + TX73_000615 0.23 +0.4
134,200 + TX73_000615 0.35 +1.4
134,237 - TX73_000615 0.39 +0.8
134,247 - TX73_000615 0.40 +1.8
134,248 + TX73_000615 0.40 -2.3
134,298 + TX73_000615 0.46 +0.1
134,323 - TX73_000615 0.48 -0.0
134,333 + TX73_000615 0.49 -0.9
134,333 + TX73_000615 0.49 -1.4
134,341 - TX73_000615 0.50 -2.6
134,341 - TX73_000615 0.50 -0.7
134,377 + TX73_000615 0.54 +0.8
134,416 + TX73_000615 0.59 -1.3
134,467 + TX73_000615 0.64 +1.2
134,563 - TX73_000615 0.75 -1.9
134,589 + TX73_000615 0.78 -0.8
134,745 + -0.4
134,745 + -0.6
134,748 - -2.0
134,823 + -1.8
134,823 + -0.6
134,831 - +0.4
134,831 - -0.1
134,852 - +0.3

Or see this region's nucleotide sequence