Experiment: sulfur source control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_011045 and TX73_011050 are separated by 167 nucleotides TX73_011050 and TX73_011055 are separated by 239 nucleotides
TX73_011045: TX73_011045 - 3-keto-5-aminohexanoate cleavage protein, at 2,406,180 to 2,407,046
_011045
TX73_011050: TX73_011050 - AMP-binding protein, at 2,407,214 to 2,408,818
_011050
TX73_011055: TX73_011055 - carboxyl transferase domain-containing protein, at 2,409,058 to 2,410,680
_011055
Position (kb)
2407
2408
2409 Strain fitness (log2 ratio)
-2
-1
0
1 at 2406.229 kb on + strand at 2406.296 kb on - strand, within TX73_011045 at 2406.361 kb on + strand, within TX73_011045 at 2406.369 kb on - strand, within TX73_011045 at 2406.385 kb on + strand, within TX73_011045 at 2406.540 kb on - strand, within TX73_011045 at 2406.616 kb on + strand, within TX73_011045 at 2406.687 kb on - strand, within TX73_011045 at 2406.690 kb on + strand, within TX73_011045 at 2406.696 kb on - strand, within TX73_011045 at 2406.696 kb on - strand, within TX73_011045 at 2406.709 kb on + strand, within TX73_011045 at 2406.776 kb on + strand, within TX73_011045 at 2406.796 kb on - strand, within TX73_011045 at 2406.871 kb on - strand, within TX73_011045 at 2406.984 kb on - strand at 2406.986 kb on + strand at 2407.195 kb on + strand at 2407.212 kb on - strand at 2407.221 kb on + strand at 2407.221 kb on + strand at 2407.221 kb on + strand at 2407.221 kb on + strand at 2407.229 kb on - strand at 2407.229 kb on - strand at 2407.229 kb on - strand at 2407.229 kb on - strand at 2407.357 kb on - strand at 2407.396 kb on + strand, within TX73_011050 at 2407.407 kb on + strand, within TX73_011050 at 2407.407 kb on + strand, within TX73_011050 at 2407.407 kb on + strand, within TX73_011050 at 2407.415 kb on - strand, within TX73_011050 at 2407.498 kb on - strand, within TX73_011050 at 2407.507 kb on + strand, within TX73_011050 at 2407.524 kb on + strand, within TX73_011050 at 2407.625 kb on - strand, within TX73_011050 at 2407.640 kb on - strand, within TX73_011050 at 2407.714 kb on + strand, within TX73_011050 at 2407.722 kb on - strand, within TX73_011050 at 2407.798 kb on + strand, within TX73_011050 at 2407.813 kb on - strand, within TX73_011050 at 2407.859 kb on + strand, within TX73_011050 at 2407.874 kb on + strand, within TX73_011050 at 2407.900 kb on + strand, within TX73_011050 at 2407.971 kb on + strand, within TX73_011050 at 2408.140 kb on + strand, within TX73_011050 at 2408.172 kb on - strand, within TX73_011050 at 2408.294 kb on + strand, within TX73_011050 at 2408.322 kb on - strand, within TX73_011050 at 2408.341 kb on - strand, within TX73_011050 at 2408.502 kb on - strand, within TX73_011050 at 2408.595 kb on + strand, within TX73_011050 at 2408.602 kb on + strand, within TX73_011050 at 2408.637 kb on - strand, within TX73_011050 at 2408.771 kb on - strand at 2408.771 kb on - strand at 2408.794 kb on + strand at 2408.814 kb on + strand at 2408.822 kb on - strand at 2408.824 kb on + strand at 2408.832 kb on - strand at 2408.832 kb on - strand at 2408.832 kb on - strand at 2409.023 kb on + strand at 2409.099 kb on + strand at 2409.281 kb on - strand, within TX73_011055 at 2409.286 kb on + strand, within TX73_011055 at 2409.294 kb on - strand, within TX73_011055 at 2409.327 kb on - strand, within TX73_011055 at 2409.420 kb on + strand, within TX73_011055 at 2409.514 kb on - strand, within TX73_011055 at 2409.566 kb on + strand, within TX73_011055 at 2409.633 kb on - strand, within TX73_011055 at 2409.673 kb on - strand, within TX73_011055 at 2409.714 kb on + strand, within TX73_011055 at 2409.714 kb on + strand, within TX73_011055 at 2409.722 kb on - strand, within TX73_011055 at 2409.774 kb on - strand, within TX73_011055
Per-strain Table
Position Strand Gene LocusTag Fraction sulfur source control remove 2,406,229 + +0.4 2,406,296 - TX73_011045 0.13 +0.1 2,406,361 + TX73_011045 0.21 -0.7 2,406,369 - TX73_011045 0.22 -2.4 2,406,385 + TX73_011045 0.24 +0.1 2,406,540 - TX73_011045 0.42 +0.3 2,406,616 + TX73_011045 0.50 +0.4 2,406,687 - TX73_011045 0.58 -0.1 2,406,690 + TX73_011045 0.59 -0.2 2,406,696 - TX73_011045 0.60 -0.5 2,406,696 - TX73_011045 0.60 +0.2 2,406,709 + TX73_011045 0.61 +0.6 2,406,776 + TX73_011045 0.69 +1.0 2,406,796 - TX73_011045 0.71 +0.1 2,406,871 - TX73_011045 0.80 -1.3 2,406,984 - +0.4 2,406,986 + +0.2 2,407,195 + +0.1 2,407,212 - -0.6 2,407,221 + +0.0 2,407,221 + +0.3 2,407,221 + -0.5 2,407,221 + -0.9 2,407,229 - -0.6 2,407,229 - -1.8 2,407,229 - -0.8 2,407,229 - -0.2 2,407,357 - -0.5 2,407,396 + TX73_011050 0.11 +0.3 2,407,407 + TX73_011050 0.12 +0.8 2,407,407 + TX73_011050 0.12 +0.0 2,407,407 + TX73_011050 0.12 -0.5 2,407,415 - TX73_011050 0.13 -0.9 2,407,498 - TX73_011050 0.18 -2.1 2,407,507 + TX73_011050 0.18 +0.9 2,407,524 + TX73_011050 0.19 +0.5 2,407,625 - TX73_011050 0.26 -0.1 2,407,640 - TX73_011050 0.27 +1.4 2,407,714 + TX73_011050 0.31 -1.9 2,407,722 - TX73_011050 0.32 -0.2 2,407,798 + TX73_011050 0.36 -0.8 2,407,813 - TX73_011050 0.37 -0.3 2,407,859 + TX73_011050 0.40 -0.5 2,407,874 + TX73_011050 0.41 -0.1 2,407,900 + TX73_011050 0.43 +1.1 2,407,971 + TX73_011050 0.47 +0.0 2,408,140 + TX73_011050 0.58 +1.0 2,408,172 - TX73_011050 0.60 -1.0 2,408,294 + TX73_011050 0.67 +0.8 2,408,322 - TX73_011050 0.69 -0.8 2,408,341 - TX73_011050 0.70 -0.4 2,408,502 - TX73_011050 0.80 +0.3 2,408,595 + TX73_011050 0.86 +0.5 2,408,602 + TX73_011050 0.86 -1.2 2,408,637 - TX73_011050 0.89 +1.0 2,408,771 - +0.3 2,408,771 - +1.2 2,408,794 + +0.2 2,408,814 + +0.1 2,408,822 - -0.8 2,408,824 + +0.2 2,408,832 - -0.7 2,408,832 - +0.1 2,408,832 - -1.5 2,409,023 + -0.1 2,409,099 + -0.8 2,409,281 - TX73_011055 0.14 -0.8 2,409,286 + TX73_011055 0.14 +0.8 2,409,294 - TX73_011055 0.15 -0.1 2,409,327 - TX73_011055 0.17 +0.9 2,409,420 + TX73_011055 0.22 +0.4 2,409,514 - TX73_011055 0.28 -0.7 2,409,566 + TX73_011055 0.31 -1.3 2,409,633 - TX73_011055 0.35 +0.3 2,409,673 - TX73_011055 0.38 +0.4 2,409,714 + TX73_011055 0.40 -2.1 2,409,714 + TX73_011055 0.40 +1.2 2,409,722 - TX73_011055 0.41 -0.4 2,409,774 - TX73_011055 0.44 -0.0
Or see this region's nucleotide sequence