Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_011050

Experiment: sulfur source control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_011045 and TX73_011050 are separated by 167 nucleotidesTX73_011050 and TX73_011055 are separated by 239 nucleotides TX73_011045: TX73_011045 - 3-keto-5-aminohexanoate cleavage protein, at 2,406,180 to 2,407,046 _011045 TX73_011050: TX73_011050 - AMP-binding protein, at 2,407,214 to 2,408,818 _011050 TX73_011055: TX73_011055 - carboxyl transferase domain-containing protein, at 2,409,058 to 2,410,680 _011055 Position (kb) 2407 2408 2409Strain fitness (log2 ratio) -2 -1 0 1at 2406.229 kb on + strandat 2406.296 kb on - strand, within TX73_011045at 2406.361 kb on + strand, within TX73_011045at 2406.369 kb on - strand, within TX73_011045at 2406.385 kb on + strand, within TX73_011045at 2406.540 kb on - strand, within TX73_011045at 2406.616 kb on + strand, within TX73_011045at 2406.687 kb on - strand, within TX73_011045at 2406.690 kb on + strand, within TX73_011045at 2406.696 kb on - strand, within TX73_011045at 2406.696 kb on - strand, within TX73_011045at 2406.709 kb on + strand, within TX73_011045at 2406.776 kb on + strand, within TX73_011045at 2406.796 kb on - strand, within TX73_011045at 2406.871 kb on - strand, within TX73_011045at 2406.984 kb on - strandat 2406.986 kb on + strandat 2407.195 kb on + strandat 2407.212 kb on - strandat 2407.221 kb on + strandat 2407.221 kb on + strandat 2407.221 kb on + strandat 2407.221 kb on + strandat 2407.229 kb on - strandat 2407.229 kb on - strandat 2407.229 kb on - strandat 2407.229 kb on - strandat 2407.357 kb on - strandat 2407.396 kb on + strand, within TX73_011050at 2407.407 kb on + strand, within TX73_011050at 2407.407 kb on + strand, within TX73_011050at 2407.407 kb on + strand, within TX73_011050at 2407.415 kb on - strand, within TX73_011050at 2407.498 kb on - strand, within TX73_011050at 2407.507 kb on + strand, within TX73_011050at 2407.524 kb on + strand, within TX73_011050at 2407.625 kb on - strand, within TX73_011050at 2407.640 kb on - strand, within TX73_011050at 2407.714 kb on + strand, within TX73_011050at 2407.722 kb on - strand, within TX73_011050at 2407.798 kb on + strand, within TX73_011050at 2407.813 kb on - strand, within TX73_011050at 2407.859 kb on + strand, within TX73_011050at 2407.874 kb on + strand, within TX73_011050at 2407.900 kb on + strand, within TX73_011050at 2407.971 kb on + strand, within TX73_011050at 2408.140 kb on + strand, within TX73_011050at 2408.172 kb on - strand, within TX73_011050at 2408.294 kb on + strand, within TX73_011050at 2408.322 kb on - strand, within TX73_011050at 2408.341 kb on - strand, within TX73_011050at 2408.502 kb on - strand, within TX73_011050at 2408.595 kb on + strand, within TX73_011050at 2408.602 kb on + strand, within TX73_011050at 2408.637 kb on - strand, within TX73_011050at 2408.771 kb on - strandat 2408.771 kb on - strandat 2408.794 kb on + strandat 2408.814 kb on + strandat 2408.822 kb on - strandat 2408.824 kb on + strandat 2408.832 kb on - strandat 2408.832 kb on - strandat 2408.832 kb on - strandat 2409.023 kb on + strandat 2409.099 kb on + strandat 2409.281 kb on - strand, within TX73_011055at 2409.286 kb on + strand, within TX73_011055at 2409.294 kb on - strand, within TX73_011055at 2409.327 kb on - strand, within TX73_011055at 2409.420 kb on + strand, within TX73_011055at 2409.514 kb on - strand, within TX73_011055at 2409.566 kb on + strand, within TX73_011055at 2409.633 kb on - strand, within TX73_011055at 2409.673 kb on - strand, within TX73_011055at 2409.714 kb on + strand, within TX73_011055at 2409.714 kb on + strand, within TX73_011055at 2409.722 kb on - strand, within TX73_011055at 2409.774 kb on - strand, within TX73_011055

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Per-strain Table

Position Strand Gene LocusTag Fraction sulfur source control
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2,406,229 + +0.4
2,406,296 - TX73_011045 0.13 +0.1
2,406,361 + TX73_011045 0.21 -0.7
2,406,369 - TX73_011045 0.22 -2.4
2,406,385 + TX73_011045 0.24 +0.1
2,406,540 - TX73_011045 0.42 +0.3
2,406,616 + TX73_011045 0.50 +0.4
2,406,687 - TX73_011045 0.58 -0.1
2,406,690 + TX73_011045 0.59 -0.2
2,406,696 - TX73_011045 0.60 -0.5
2,406,696 - TX73_011045 0.60 +0.2
2,406,709 + TX73_011045 0.61 +0.6
2,406,776 + TX73_011045 0.69 +1.0
2,406,796 - TX73_011045 0.71 +0.1
2,406,871 - TX73_011045 0.80 -1.3
2,406,984 - +0.4
2,406,986 + +0.2
2,407,195 + +0.1
2,407,212 - -0.6
2,407,221 + +0.0
2,407,221 + +0.3
2,407,221 + -0.5
2,407,221 + -0.9
2,407,229 - -0.6
2,407,229 - -1.8
2,407,229 - -0.8
2,407,229 - -0.2
2,407,357 - -0.5
2,407,396 + TX73_011050 0.11 +0.3
2,407,407 + TX73_011050 0.12 +0.8
2,407,407 + TX73_011050 0.12 +0.0
2,407,407 + TX73_011050 0.12 -0.5
2,407,415 - TX73_011050 0.13 -0.9
2,407,498 - TX73_011050 0.18 -2.1
2,407,507 + TX73_011050 0.18 +0.9
2,407,524 + TX73_011050 0.19 +0.5
2,407,625 - TX73_011050 0.26 -0.1
2,407,640 - TX73_011050 0.27 +1.4
2,407,714 + TX73_011050 0.31 -1.9
2,407,722 - TX73_011050 0.32 -0.2
2,407,798 + TX73_011050 0.36 -0.8
2,407,813 - TX73_011050 0.37 -0.3
2,407,859 + TX73_011050 0.40 -0.5
2,407,874 + TX73_011050 0.41 -0.1
2,407,900 + TX73_011050 0.43 +1.1
2,407,971 + TX73_011050 0.47 +0.0
2,408,140 + TX73_011050 0.58 +1.0
2,408,172 - TX73_011050 0.60 -1.0
2,408,294 + TX73_011050 0.67 +0.8
2,408,322 - TX73_011050 0.69 -0.8
2,408,341 - TX73_011050 0.70 -0.4
2,408,502 - TX73_011050 0.80 +0.3
2,408,595 + TX73_011050 0.86 +0.5
2,408,602 + TX73_011050 0.86 -1.2
2,408,637 - TX73_011050 0.89 +1.0
2,408,771 - +0.3
2,408,771 - +1.2
2,408,794 + +0.2
2,408,814 + +0.1
2,408,822 - -0.8
2,408,824 + +0.2
2,408,832 - -0.7
2,408,832 - +0.1
2,408,832 - -1.5
2,409,023 + -0.1
2,409,099 + -0.8
2,409,281 - TX73_011055 0.14 -0.8
2,409,286 + TX73_011055 0.14 +0.8
2,409,294 - TX73_011055 0.15 -0.1
2,409,327 - TX73_011055 0.17 +0.9
2,409,420 + TX73_011055 0.22 +0.4
2,409,514 - TX73_011055 0.28 -0.7
2,409,566 + TX73_011055 0.31 -1.3
2,409,633 - TX73_011055 0.35 +0.3
2,409,673 - TX73_011055 0.38 +0.4
2,409,714 + TX73_011055 0.40 -2.1
2,409,714 + TX73_011055 0.40 +1.2
2,409,722 - TX73_011055 0.41 -0.4
2,409,774 - TX73_011055 0.44 -0.0

Or see this region's nucleotide sequence