Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_005415

Experiment: sulfur source control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntTX73_005405 and TX73_005410 are separated by 173 nucleotidesTX73_005410 and TX73_005415 are separated by 59 nucleotidesTX73_005415 and TX73_005420 are separated by 16 nucleotides TX73_005405: TX73_005405 - cell wall hydrolase, at 1,159,063 to 1,160,493 _005405 TX73_005410: TX73_005410 - hypothetical protein, at 1,160,667 to 1,160,990 _005410 TX73_005415: TX73_005415 - carboxylating nicotinate-nucleotide diphosphorylase, at 1,161,050 to 1,161,925 _005415 TX73_005420: TX73_005420 - L-aspartate oxidase, at 1,161,942 to 1,163,558 _005420 Position (kb) 1161 1162Strain fitness (log2 ratio) -1 0 1at 1160.061 kb on + strand, within TX73_005405at 1160.079 kb on - strand, within TX73_005405at 1160.079 kb on - strand, within TX73_005405at 1160.093 kb on + strand, within TX73_005405at 1160.198 kb on + strand, within TX73_005405at 1160.214 kb on - strand, within TX73_005405at 1160.248 kb on + strand, within TX73_005405at 1160.252 kb on + strand, within TX73_005405at 1160.315 kb on + strand, within TX73_005405at 1160.317 kb on - strand, within TX73_005405at 1160.343 kb on - strand, within TX73_005405at 1160.358 kb on - strandat 1160.403 kb on - strandat 1160.403 kb on - strandat 1160.480 kb on - strandat 1160.484 kb on + strandat 1160.515 kb on + strandat 1160.608 kb on + strandat 1160.659 kb on - strandat 1160.659 kb on - strandat 1160.692 kb on + strandat 1160.702 kb on + strand, within TX73_005410at 1160.705 kb on - strand, within TX73_005410at 1160.707 kb on + strand, within TX73_005410at 1160.731 kb on - strand, within TX73_005410at 1160.872 kb on - strand, within TX73_005410at 1160.872 kb on - strand, within TX73_005410at 1160.894 kb on - strand, within TX73_005410at 1161.020 kb on - strandat 1161.020 kb on - strandat 1161.050 kb on - strandat 1161.057 kb on + strandat 1161.968 kb on + strandat 1161.968 kb on + strandat 1161.968 kb on + strandat 1161.976 kb on - strandat 1161.991 kb on - strandat 1162.004 kb on - strandat 1162.025 kb on - strandat 1162.033 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction sulfur source control
remove
1,160,061 + TX73_005405 0.70 -1.2
1,160,079 - TX73_005405 0.71 +1.4
1,160,079 - TX73_005405 0.71 -0.0
1,160,093 + TX73_005405 0.72 -0.1
1,160,198 + TX73_005405 0.79 -0.6
1,160,214 - TX73_005405 0.80 +0.4
1,160,248 + TX73_005405 0.83 -0.6
1,160,252 + TX73_005405 0.83 +0.1
1,160,315 + TX73_005405 0.87 -0.3
1,160,317 - TX73_005405 0.88 -1.2
1,160,343 - TX73_005405 0.89 +0.2
1,160,358 - +0.1
1,160,403 - +0.1
1,160,403 - +1.0
1,160,480 - +0.3
1,160,484 + +0.1
1,160,515 + +0.3
1,160,608 + -0.3
1,160,659 - +0.1
1,160,659 - -1.2
1,160,692 + -0.1
1,160,702 + TX73_005410 0.11 +0.2
1,160,705 - TX73_005410 0.12 +0.8
1,160,707 + TX73_005410 0.12 -0.3
1,160,731 - TX73_005410 0.20 +0.8
1,160,872 - TX73_005410 0.63 -0.0
1,160,872 - TX73_005410 0.63 -0.1
1,160,894 - TX73_005410 0.70 +1.4
1,161,020 - +0.2
1,161,020 - +0.5
1,161,050 - -0.3
1,161,057 + -0.1
1,161,968 + -0.4
1,161,968 + +0.7
1,161,968 + -1.4
1,161,976 - +0.5
1,161,991 - +0.4
1,162,004 - +0.6
1,162,025 - -0.4
1,162,033 + +0.8

Or see this region's nucleotide sequence