Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_008030

Experiment: sulfur source control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_008025 and TX73_008030 are separated by 136 nucleotidesTX73_008030 and TX73_008035 are separated by 207 nucleotides TX73_008025: TX73_008025 - LysR family transcriptional regulator, at 1,734,581 to 1,735,555 _008025 TX73_008030: TX73_008030 - carbon-nitrogen hydrolase family protein, at 1,735,692 to 1,736,741 _008030 TX73_008035: TX73_008035 - ABC transporter substrate-binding protein, at 1,736,949 to 1,738,133 _008035 Position (kb) 1735 1736 1737Strain fitness (log2 ratio) -2 -1 0 1 2at 1734.706 kb on - strand, within TX73_008025at 1734.706 kb on - strand, within TX73_008025at 1734.994 kb on - strand, within TX73_008025at 1734.994 kb on - strand, within TX73_008025at 1735.026 kb on + strand, within TX73_008025at 1735.031 kb on + strand, within TX73_008025at 1735.033 kb on + strand, within TX73_008025at 1735.034 kb on - strand, within TX73_008025at 1735.046 kb on - strand, within TX73_008025at 1735.099 kb on + strand, within TX73_008025at 1735.320 kb on + strand, within TX73_008025at 1735.360 kb on + strand, within TX73_008025at 1735.489 kb on - strandat 1735.494 kb on - strandat 1735.516 kb on + strandat 1735.524 kb on - strandat 1735.575 kb on - strandat 1735.597 kb on + strandat 1735.660 kb on + strandat 1735.668 kb on - strandat 1735.716 kb on + strandat 1735.739 kb on - strandat 1735.748 kb on + strandat 1735.794 kb on - strandat 1735.832 kb on + strand, within TX73_008030at 1735.879 kb on + strand, within TX73_008030at 1736.085 kb on + strand, within TX73_008030at 1736.103 kb on + strand, within TX73_008030at 1736.116 kb on - strand, within TX73_008030at 1736.172 kb on + strand, within TX73_008030at 1736.180 kb on - strand, within TX73_008030at 1736.220 kb on - strand, within TX73_008030at 1736.245 kb on - strand, within TX73_008030at 1736.280 kb on - strand, within TX73_008030at 1736.341 kb on + strand, within TX73_008030at 1736.451 kb on - strand, within TX73_008030at 1736.477 kb on + strand, within TX73_008030at 1736.679 kb on + strandat 1736.743 kb on - strandat 1736.771 kb on + strandat 1736.779 kb on - strandat 1736.961 kb on - strandat 1737.038 kb on + strandat 1737.081 kb on + strand, within TX73_008035at 1737.090 kb on + strand, within TX73_008035at 1737.098 kb on - strand, within TX73_008035at 1737.117 kb on + strand, within TX73_008035at 1737.160 kb on - strand, within TX73_008035at 1737.214 kb on + strand, within TX73_008035at 1737.215 kb on - strand, within TX73_008035at 1737.266 kb on - strand, within TX73_008035at 1737.444 kb on + strand, within TX73_008035at 1737.549 kb on + strand, within TX73_008035at 1737.629 kb on + strand, within TX73_008035at 1737.629 kb on + strand, within TX73_008035at 1737.637 kb on - strand, within TX73_008035

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Per-strain Table

Position Strand Gene LocusTag Fraction sulfur source control
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1,734,706 - TX73_008025 0.13 -0.4
1,734,706 - TX73_008025 0.13 -2.4
1,734,994 - TX73_008025 0.42 +0.3
1,734,994 - TX73_008025 0.42 -0.8
1,735,026 + TX73_008025 0.46 -0.4
1,735,031 + TX73_008025 0.46 +0.1
1,735,033 + TX73_008025 0.46 -0.9
1,735,034 - TX73_008025 0.46 -0.3
1,735,046 - TX73_008025 0.48 -0.5
1,735,099 + TX73_008025 0.53 +0.9
1,735,320 + TX73_008025 0.76 -0.3
1,735,360 + TX73_008025 0.80 -0.6
1,735,489 - +0.5
1,735,494 - +0.4
1,735,516 + -0.0
1,735,524 - +0.3
1,735,575 - +0.3
1,735,597 + +0.1
1,735,660 + +0.3
1,735,668 - -0.4
1,735,716 + +0.1
1,735,739 - +0.4
1,735,748 + -0.3
1,735,794 - -0.1
1,735,832 + TX73_008030 0.13 -1.5
1,735,879 + TX73_008030 0.18 +0.3
1,736,085 + TX73_008030 0.37 -0.0
1,736,103 + TX73_008030 0.39 +0.4
1,736,116 - TX73_008030 0.40 -1.5
1,736,172 + TX73_008030 0.46 +1.0
1,736,180 - TX73_008030 0.46 +2.0
1,736,220 - TX73_008030 0.50 +0.1
1,736,245 - TX73_008030 0.53 +0.9
1,736,280 - TX73_008030 0.56 +0.3
1,736,341 + TX73_008030 0.62 +1.1
1,736,451 - TX73_008030 0.72 -0.1
1,736,477 + TX73_008030 0.75 -1.2
1,736,679 + +0.9
1,736,743 - -0.0
1,736,771 + -0.6
1,736,779 - +0.2
1,736,961 - +0.8
1,737,038 + -0.2
1,737,081 + TX73_008035 0.11 -0.0
1,737,090 + TX73_008035 0.12 +0.4
1,737,098 - TX73_008035 0.13 +0.2
1,737,117 + TX73_008035 0.14 -2.5
1,737,160 - TX73_008035 0.18 +0.6
1,737,214 + TX73_008035 0.22 -0.2
1,737,215 - TX73_008035 0.22 -0.1
1,737,266 - TX73_008035 0.27 -0.5
1,737,444 + TX73_008035 0.42 +0.0
1,737,549 + TX73_008035 0.51 -0.3
1,737,629 + TX73_008035 0.57 +0.9
1,737,629 + TX73_008035 0.57 +0.4
1,737,637 - TX73_008035 0.58 -0.8

Or see this region's nucleotide sequence