Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_002105

Experiment: sulfur source control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_002090 and TX73_002095 are separated by 18 nucleotidesTX73_002095 and TX73_002100 are separated by 82 nucleotidesTX73_002100 and TX73_002105 are separated by 199 nucleotidesTX73_002105 and TX73_002110 are separated by 3 nucleotides TX73_002090: TX73_002090 - TetR/AcrR family transcriptional regulator, at 442,870 to 443,490 _002090 TX73_002095: TX73_002095 - YkvA family protein, at 443,509 to 443,883 _002095 TX73_002100: TX73_002100 - 4a-hydroxytetrahydrobiopterin dehydratase, at 443,966 to 444,268 _002100 TX73_002105: TX73_002105 - TAXI family TRAP transporter solute-binding subunit, at 444,468 to 445,856 _002105 TX73_002110: TX73_002110 - PepSY domain-containing protein, at 445,860 to 447,305 _002110 Position (kb) 444 445 446Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 443.475 kb on + strandat 443.485 kb on + strandat 443.485 kb on + strandat 443.485 kb on + strandat 443.485 kb on + strandat 443.492 kb on - strandat 443.493 kb on - strandat 443.493 kb on - strandat 443.493 kb on - strandat 443.516 kb on - strandat 443.520 kb on + strandat 443.534 kb on - strandat 443.562 kb on + strand, within TX73_002095at 443.570 kb on - strand, within TX73_002095at 443.570 kb on - strand, within TX73_002095at 443.578 kb on + strand, within TX73_002095at 443.692 kb on + strand, within TX73_002095at 443.695 kb on - strand, within TX73_002095at 443.710 kb on - strand, within TX73_002095at 443.740 kb on + strand, within TX73_002095at 443.748 kb on - strand, within TX73_002095at 443.748 kb on - strand, within TX73_002095at 443.766 kb on - strand, within TX73_002095at 443.781 kb on + strand, within TX73_002095at 443.789 kb on + strand, within TX73_002095at 443.823 kb on + strand, within TX73_002095at 443.831 kb on - strand, within TX73_002095at 443.831 kb on - strand, within TX73_002095at 443.853 kb on - strandat 443.861 kb on - strandat 443.862 kb on - strandat 443.876 kb on + strandat 443.877 kb on - strandat 443.919 kb on + strandat 443.949 kb on - strandat 444.021 kb on - strand, within TX73_002100at 444.053 kb on + strand, within TX73_002100at 444.061 kb on - strand, within TX73_002100at 444.066 kb on - strand, within TX73_002100at 444.074 kb on + strand, within TX73_002100at 444.143 kb on + strand, within TX73_002100at 444.215 kb on + strand, within TX73_002100at 444.280 kb on - strandat 444.283 kb on - strandat 444.285 kb on - strandat 444.403 kb on + strandat 444.405 kb on - strandat 444.413 kb on + strandat 444.463 kb on + strandat 444.465 kb on - strandat 444.489 kb on - strandat 444.507 kb on + strandat 444.539 kb on + strandat 444.566 kb on - strandat 444.585 kb on + strandat 444.586 kb on + strandat 444.690 kb on + strand, within TX73_002105at 444.710 kb on + strand, within TX73_002105at 444.723 kb on - strand, within TX73_002105at 444.731 kb on + strand, within TX73_002105at 444.745 kb on + strand, within TX73_002105at 444.755 kb on + strand, within TX73_002105at 444.791 kb on + strand, within TX73_002105at 444.791 kb on + strand, within TX73_002105at 444.791 kb on + strand, within TX73_002105at 444.806 kb on + strand, within TX73_002105at 444.832 kb on - strand, within TX73_002105at 444.832 kb on - strand, within TX73_002105at 444.848 kb on + strand, within TX73_002105at 444.863 kb on - strand, within TX73_002105at 444.869 kb on - strand, within TX73_002105at 444.937 kb on - strand, within TX73_002105at 444.951 kb on + strand, within TX73_002105at 444.969 kb on - strand, within TX73_002105at 444.974 kb on + strand, within TX73_002105at 445.006 kb on + strand, within TX73_002105at 445.043 kb on - strand, within TX73_002105at 445.090 kb on - strand, within TX73_002105at 445.129 kb on - strand, within TX73_002105at 445.153 kb on - strand, within TX73_002105at 445.193 kb on + strand, within TX73_002105at 445.203 kb on + strand, within TX73_002105at 445.208 kb on - strand, within TX73_002105at 445.280 kb on + strand, within TX73_002105at 445.290 kb on - strand, within TX73_002105at 445.305 kb on + strand, within TX73_002105at 445.320 kb on - strand, within TX73_002105at 445.422 kb on + strand, within TX73_002105at 445.496 kb on + strand, within TX73_002105at 445.534 kb on - strand, within TX73_002105at 445.562 kb on + strand, within TX73_002105at 445.585 kb on + strand, within TX73_002105at 445.585 kb on + strand, within TX73_002105at 445.587 kb on + strand, within TX73_002105at 445.616 kb on + strand, within TX73_002105at 445.616 kb on + strand, within TX73_002105at 445.624 kb on - strand, within TX73_002105at 445.642 kb on + strand, within TX73_002105at 445.657 kb on + strand, within TX73_002105at 445.683 kb on + strand, within TX73_002105at 445.691 kb on + strand, within TX73_002105at 445.745 kb on + strandat 445.834 kb on + strandat 445.834 kb on + strandat 445.834 kb on + strandat 445.847 kb on + strandat 445.851 kb on + strandat 445.851 kb on + strandat 445.851 kb on + strandat 445.851 kb on + strandat 445.851 kb on + strandat 445.853 kb on + strandat 445.856 kb on + strandat 445.859 kb on - strandat 445.859 kb on - strandat 445.859 kb on - strandat 445.884 kb on + strandat 445.962 kb on - strandat 445.978 kb on - strandat 446.048 kb on + strand, within TX73_002110at 446.063 kb on - strand, within TX73_002110at 446.098 kb on + strand, within TX73_002110at 446.101 kb on - strand, within TX73_002110at 446.119 kb on - strand, within TX73_002110at 446.129 kb on + strand, within TX73_002110at 446.160 kb on - strand, within TX73_002110at 446.160 kb on - strand, within TX73_002110at 446.170 kb on - strand, within TX73_002110at 446.201 kb on - strand, within TX73_002110at 446.302 kb on - strand, within TX73_002110at 446.312 kb on - strand, within TX73_002110at 446.312 kb on - strand, within TX73_002110at 446.312 kb on - strand, within TX73_002110at 446.358 kb on - strand, within TX73_002110at 446.372 kb on - strand, within TX73_002110at 446.404 kb on + strand, within TX73_002110at 446.404 kb on + strand, within TX73_002110at 446.409 kb on + strand, within TX73_002110at 446.412 kb on - strand, within TX73_002110at 446.412 kb on - strand, within TX73_002110at 446.417 kb on - strand, within TX73_002110at 446.417 kb on - strand, within TX73_002110at 446.425 kb on - strand, within TX73_002110at 446.432 kb on + strand, within TX73_002110at 446.442 kb on + strand, within TX73_002110at 446.514 kb on - strand, within TX73_002110at 446.567 kb on - strand, within TX73_002110at 446.598 kb on + strand, within TX73_002110at 446.606 kb on - strand, within TX73_002110at 446.631 kb on + strand, within TX73_002110at 446.643 kb on + strand, within TX73_002110at 446.655 kb on + strand, within TX73_002110at 446.696 kb on - strand, within TX73_002110at 446.753 kb on + strand, within TX73_002110at 446.791 kb on + strand, within TX73_002110at 446.791 kb on + strand, within TX73_002110at 446.791 kb on + strand, within TX73_002110at 446.799 kb on - strand, within TX73_002110at 446.799 kb on - strand, within TX73_002110at 446.799 kb on - strand, within TX73_002110at 446.799 kb on - strand, within TX73_002110at 446.799 kb on - strand, within TX73_002110

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Per-strain Table

Position Strand Gene LocusTag Fraction sulfur source control
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443,475 + +0.4
443,485 + +0.4
443,485 + -0.8
443,485 + +0.2
443,485 + -2.1
443,492 - +0.9
443,493 - -0.2
443,493 - -0.5
443,493 - -0.9
443,516 - -0.5
443,520 + +0.8
443,534 - -0.7
443,562 + TX73_002095 0.14 -1.7
443,570 - TX73_002095 0.16 -1.2
443,570 - TX73_002095 0.16 -0.1
443,578 + TX73_002095 0.18 -0.7
443,692 + TX73_002095 0.49 -0.4
443,695 - TX73_002095 0.50 -1.0
443,710 - TX73_002095 0.54 +0.3
443,740 + TX73_002095 0.62 +3.1
443,748 - TX73_002095 0.64 -1.6
443,748 - TX73_002095 0.64 -1.1
443,766 - TX73_002095 0.69 -0.1
443,781 + TX73_002095 0.73 +0.2
443,789 + TX73_002095 0.75 +0.6
443,823 + TX73_002095 0.84 -0.2
443,831 - TX73_002095 0.86 -0.4
443,831 - TX73_002095 0.86 -1.3
443,853 - -2.3
443,861 - -1.0
443,862 - +0.7
443,876 + -0.0
443,877 - +0.6
443,919 + -0.0
443,949 - +0.2
444,021 - TX73_002100 0.18 +0.4
444,053 + TX73_002100 0.29 +0.9
444,061 - TX73_002100 0.31 +0.9
444,066 - TX73_002100 0.33 -0.1
444,074 + TX73_002100 0.36 -0.4
444,143 + TX73_002100 0.58 +0.3
444,215 + TX73_002100 0.82 -0.0
444,280 - +0.5
444,283 - +0.1
444,285 - -1.4
444,403 + -0.4
444,405 - +1.0
444,413 + +0.8
444,463 + +0.0
444,465 - -0.3
444,489 - +0.2
444,507 + -0.5
444,539 + +0.2
444,566 - -0.2
444,585 + -0.5
444,586 + +0.2
444,690 + TX73_002105 0.16 +0.4
444,710 + TX73_002105 0.17 +0.5
444,723 - TX73_002105 0.18 +0.5
444,731 + TX73_002105 0.19 -0.4
444,745 + TX73_002105 0.20 -1.2
444,755 + TX73_002105 0.21 +0.0
444,791 + TX73_002105 0.23 +0.7
444,791 + TX73_002105 0.23 +0.2
444,791 + TX73_002105 0.23 +0.9
444,806 + TX73_002105 0.24 +0.2
444,832 - TX73_002105 0.26 -0.3
444,832 - TX73_002105 0.26 -0.1
444,848 + TX73_002105 0.27 +0.1
444,863 - TX73_002105 0.28 +0.9
444,869 - TX73_002105 0.29 -0.2
444,937 - TX73_002105 0.34 +0.0
444,951 + TX73_002105 0.35 +0.2
444,969 - TX73_002105 0.36 +0.7
444,974 + TX73_002105 0.36 +0.6
445,006 + TX73_002105 0.39 +0.0
445,043 - TX73_002105 0.41 -0.5
445,090 - TX73_002105 0.45 -0.5
445,129 - TX73_002105 0.48 -0.5
445,153 - TX73_002105 0.49 -0.6
445,193 + TX73_002105 0.52 -0.7
445,203 + TX73_002105 0.53 -2.2
445,208 - TX73_002105 0.53 -0.5
445,280 + TX73_002105 0.58 +0.5
445,290 - TX73_002105 0.59 +0.5
445,305 + TX73_002105 0.60 +0.0
445,320 - TX73_002105 0.61 +0.2
445,422 + TX73_002105 0.69 -2.5
445,496 + TX73_002105 0.74 -0.8
445,534 - TX73_002105 0.77 -0.2
445,562 + TX73_002105 0.79 -1.4
445,585 + TX73_002105 0.80 +0.8
445,585 + TX73_002105 0.80 -0.3
445,587 + TX73_002105 0.81 -0.2
445,616 + TX73_002105 0.83 +0.8
445,616 + TX73_002105 0.83 +0.2
445,624 - TX73_002105 0.83 +0.8
445,642 + TX73_002105 0.85 +0.8
445,657 + TX73_002105 0.86 -0.7
445,683 + TX73_002105 0.87 -0.4
445,691 + TX73_002105 0.88 -0.7
445,745 + -0.0
445,834 + -0.6
445,834 + +0.2
445,834 + -0.8
445,847 + -0.7
445,851 + +0.9
445,851 + -2.1
445,851 + +0.4
445,851 + +0.3
445,851 + +0.0
445,853 + -1.0
445,856 + +1.4
445,859 - -0.0
445,859 - -0.8
445,859 - +0.2
445,884 + -0.8
445,962 - +0.6
445,978 - +0.2
446,048 + TX73_002110 0.13 +0.2
446,063 - TX73_002110 0.14 -0.9
446,098 + TX73_002110 0.16 -0.1
446,101 - TX73_002110 0.17 -2.4
446,119 - TX73_002110 0.18 -0.1
446,129 + TX73_002110 0.19 +0.2
446,160 - TX73_002110 0.21 +0.1
446,160 - TX73_002110 0.21 -2.9
446,170 - TX73_002110 0.21 +0.3
446,201 - TX73_002110 0.24 +1.8
446,302 - TX73_002110 0.31 +0.6
446,312 - TX73_002110 0.31 +0.0
446,312 - TX73_002110 0.31 -2.5
446,312 - TX73_002110 0.31 -1.0
446,358 - TX73_002110 0.34 +0.2
446,372 - TX73_002110 0.35 +0.0
446,404 + TX73_002110 0.38 +0.3
446,404 + TX73_002110 0.38 -0.9
446,409 + TX73_002110 0.38 -0.1
446,412 - TX73_002110 0.38 -0.6
446,412 - TX73_002110 0.38 -0.1
446,417 - TX73_002110 0.39 +0.5
446,417 - TX73_002110 0.39 -1.0
446,425 - TX73_002110 0.39 +1.0
446,432 + TX73_002110 0.40 -0.0
446,442 + TX73_002110 0.40 +0.4
446,514 - TX73_002110 0.45 +0.7
446,567 - TX73_002110 0.49 -0.4
446,598 + TX73_002110 0.51 +1.0
446,606 - TX73_002110 0.52 -1.7
446,631 + TX73_002110 0.53 -2.4
446,643 + TX73_002110 0.54 -0.8
446,655 + TX73_002110 0.55 +0.1
446,696 - TX73_002110 0.58 +0.0
446,753 + TX73_002110 0.62 -0.9
446,791 + TX73_002110 0.64 +0.1
446,791 + TX73_002110 0.64 +0.9
446,791 + TX73_002110 0.64 -0.8
446,799 - TX73_002110 0.65 -1.3
446,799 - TX73_002110 0.65 +0.2
446,799 - TX73_002110 0.65 -0.0
446,799 - TX73_002110 0.65 +0.5
446,799 - TX73_002110 0.65 -0.4

Or see this region's nucleotide sequence