Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_014275

Experiment: Sebacic (C); anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntTX73_014270 and TX73_014275 are separated by 65 nucleotidesTX73_014275 and TX73_014280 are separated by 361 nucleotides TX73_014270: TX73_014270 - polysaccharide deacetylase family protein, at 3,127,398 to 3,128,450 _014270 TX73_014275: TX73_014275 - DNA starvation/stationary phase protection protein, at 3,128,516 to 3,128,998 _014275 TX73_014280: TX73_014280 - hypothetical protein, at 3,129,360 to 3,130,286 _014280 Position (kb) 3128 3129Strain fitness (log2 ratio) -1 0 1 2at 3127.528 kb on + strand, within TX73_014270at 3127.546 kb on - strand, within TX73_014270at 3127.561 kb on + strand, within TX73_014270at 3127.599 kb on + strand, within TX73_014270at 3127.628 kb on - strand, within TX73_014270at 3127.630 kb on - strand, within TX73_014270at 3127.717 kb on - strand, within TX73_014270at 3127.719 kb on - strand, within TX73_014270at 3127.753 kb on - strand, within TX73_014270at 3127.811 kb on - strand, within TX73_014270at 3127.940 kb on + strand, within TX73_014270at 3127.993 kb on - strand, within TX73_014270at 3128.039 kb on - strand, within TX73_014270at 3128.099 kb on + strand, within TX73_014270at 3128.157 kb on + strand, within TX73_014270at 3128.159 kb on - strand, within TX73_014270at 3128.164 kb on - strand, within TX73_014270at 3128.164 kb on - strand, within TX73_014270at 3128.164 kb on - strand, within TX73_014270at 3128.230 kb on + strand, within TX73_014270at 3128.255 kb on + strand, within TX73_014270at 3128.263 kb on - strand, within TX73_014270at 3128.263 kb on - strand, within TX73_014270at 3128.263 kb on - strand, within TX73_014270at 3128.263 kb on - strand, within TX73_014270at 3128.263 kb on - strand, within TX73_014270at 3128.279 kb on + strand, within TX73_014270at 3128.344 kb on - strand, within TX73_014270at 3128.346 kb on + strandat 3128.385 kb on - strandat 3128.386 kb on - strandat 3128.386 kb on - strandat 3128.395 kb on - strandat 3128.396 kb on - strandat 3128.398 kb on + strandat 3128.402 kb on + strandat 3128.420 kb on + strandat 3128.420 kb on + strandat 3128.427 kb on + strandat 3128.427 kb on + strandat 3128.442 kb on - strandat 3128.448 kb on - strandat 3128.473 kb on + strandat 3128.537 kb on - strandat 3128.547 kb on - strandat 3128.583 kb on - strand, within TX73_014275at 3128.589 kb on + strand, within TX73_014275at 3128.589 kb on + strand, within TX73_014275at 3128.601 kb on + strand, within TX73_014275at 3128.618 kb on - strand, within TX73_014275at 3128.627 kb on - strand, within TX73_014275at 3128.684 kb on + strand, within TX73_014275at 3128.691 kb on + strand, within TX73_014275at 3128.691 kb on + strand, within TX73_014275at 3128.694 kb on - strand, within TX73_014275at 3128.699 kb on - strand, within TX73_014275at 3128.699 kb on - strand, within TX73_014275at 3128.699 kb on - strand, within TX73_014275at 3128.699 kb on - strand, within TX73_014275at 3128.740 kb on + strand, within TX73_014275at 3128.785 kb on - strand, within TX73_014275at 3128.805 kb on + strand, within TX73_014275at 3128.805 kb on + strand, within TX73_014275at 3128.805 kb on + strand, within TX73_014275at 3128.805 kb on + strand, within TX73_014275at 3128.817 kb on + strand, within TX73_014275at 3128.819 kb on + strand, within TX73_014275at 3128.819 kb on + strand, within TX73_014275at 3128.820 kb on - strand, within TX73_014275at 3128.847 kb on + strand, within TX73_014275at 3128.900 kb on - strand, within TX73_014275at 3128.904 kb on + strand, within TX73_014275at 3128.927 kb on + strand, within TX73_014275at 3128.935 kb on - strand, within TX73_014275at 3128.966 kb on - strandat 3128.988 kb on + strandat 3128.999 kb on + strandat 3129.012 kb on - strandat 3129.014 kb on - strandat 3129.045 kb on - strandat 3129.264 kb on + strandat 3129.264 kb on + strandat 3129.380 kb on + strandat 3129.383 kb on - strandat 3129.399 kb on + strandat 3129.463 kb on + strand, within TX73_014280at 3129.537 kb on + strand, within TX73_014280at 3129.537 kb on + strand, within TX73_014280at 3129.641 kb on + strand, within TX73_014280at 3129.699 kb on + strand, within TX73_014280at 3129.704 kb on + strand, within TX73_014280at 3129.704 kb on + strand, within TX73_014280at 3129.707 kb on - strand, within TX73_014280at 3129.788 kb on - strand, within TX73_014280at 3129.808 kb on + strand, within TX73_014280at 3129.816 kb on - strand, within TX73_014280at 3129.816 kb on - strand, within TX73_014280at 3129.816 kb on - strand, within TX73_014280at 3129.872 kb on + strand, within TX73_014280at 3129.917 kb on - strand, within TX73_014280at 3129.941 kb on + strand, within TX73_014280

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C); anaerobic
remove
3,127,528 + TX73_014270 0.12 +0.2
3,127,546 - TX73_014270 0.14 -0.0
3,127,561 + TX73_014270 0.15 +0.1
3,127,599 + TX73_014270 0.19 +0.3
3,127,628 - TX73_014270 0.22 +0.5
3,127,630 - TX73_014270 0.22 +0.7
3,127,717 - TX73_014270 0.30 -1.0
3,127,719 - TX73_014270 0.30 +1.0
3,127,753 - TX73_014270 0.34 -0.3
3,127,811 - TX73_014270 0.39 +0.2
3,127,940 + TX73_014270 0.51 +0.5
3,127,993 - TX73_014270 0.57 -0.2
3,128,039 - TX73_014270 0.61 -0.2
3,128,099 + TX73_014270 0.67 -0.1
3,128,157 + TX73_014270 0.72 +0.3
3,128,159 - TX73_014270 0.72 +2.2
3,128,164 - TX73_014270 0.73 +1.3
3,128,164 - TX73_014270 0.73 +0.9
3,128,164 - TX73_014270 0.73 -0.2
3,128,230 + TX73_014270 0.79 -0.2
3,128,255 + TX73_014270 0.81 -0.6
3,128,263 - TX73_014270 0.82 +0.9
3,128,263 - TX73_014270 0.82 +0.0
3,128,263 - TX73_014270 0.82 +0.9
3,128,263 - TX73_014270 0.82 -0.3
3,128,263 - TX73_014270 0.82 +1.4
3,128,279 + TX73_014270 0.84 +0.3
3,128,344 - TX73_014270 0.90 -0.8
3,128,346 + -0.2
3,128,385 - +1.0
3,128,386 - +0.2
3,128,386 - +0.8
3,128,395 - -0.5
3,128,396 - -1.2
3,128,398 + +0.1
3,128,402 + -0.3
3,128,420 + -0.4
3,128,420 + +0.1
3,128,427 + -1.1
3,128,427 + +0.9
3,128,442 - +0.8
3,128,448 - +0.1
3,128,473 + +0.4
3,128,537 - +0.2
3,128,547 - +0.2
3,128,583 - TX73_014275 0.14 -0.1
3,128,589 + TX73_014275 0.15 +0.5
3,128,589 + TX73_014275 0.15 +0.2
3,128,601 + TX73_014275 0.18 +0.3
3,128,618 - TX73_014275 0.21 +0.4
3,128,627 - TX73_014275 0.23 -0.3
3,128,684 + TX73_014275 0.35 -0.8
3,128,691 + TX73_014275 0.36 +0.1
3,128,691 + TX73_014275 0.36 -0.0
3,128,694 - TX73_014275 0.37 -0.6
3,128,699 - TX73_014275 0.38 -0.4
3,128,699 - TX73_014275 0.38 +0.4
3,128,699 - TX73_014275 0.38 -0.3
3,128,699 - TX73_014275 0.38 +1.3
3,128,740 + TX73_014275 0.46 +0.8
3,128,785 - TX73_014275 0.56 -0.5
3,128,805 + TX73_014275 0.60 +0.9
3,128,805 + TX73_014275 0.60 +0.0
3,128,805 + TX73_014275 0.60 +0.9
3,128,805 + TX73_014275 0.60 +0.8
3,128,817 + TX73_014275 0.62 +0.1
3,128,819 + TX73_014275 0.63 +0.5
3,128,819 + TX73_014275 0.63 -0.6
3,128,820 - TX73_014275 0.63 +0.5
3,128,847 + TX73_014275 0.69 +1.2
3,128,900 - TX73_014275 0.80 +0.3
3,128,904 + TX73_014275 0.80 +0.2
3,128,927 + TX73_014275 0.85 +0.3
3,128,935 - TX73_014275 0.87 -0.1
3,128,966 - -0.5
3,128,988 + -0.5
3,128,999 + +0.6
3,129,012 - +0.3
3,129,014 - +0.9
3,129,045 - +0.1
3,129,264 + -1.6
3,129,264 + +0.1
3,129,380 + -0.2
3,129,383 - +0.1
3,129,399 + -0.5
3,129,463 + TX73_014280 0.11 +0.7
3,129,537 + TX73_014280 0.19 -0.9
3,129,537 + TX73_014280 0.19 -0.1
3,129,641 + TX73_014280 0.30 +0.4
3,129,699 + TX73_014280 0.37 -0.7
3,129,704 + TX73_014280 0.37 +0.7
3,129,704 + TX73_014280 0.37 +0.1
3,129,707 - TX73_014280 0.37 +0.2
3,129,788 - TX73_014280 0.46 +0.4
3,129,808 + TX73_014280 0.48 -0.5
3,129,816 - TX73_014280 0.49 +1.1
3,129,816 - TX73_014280 0.49 +0.7
3,129,816 - TX73_014280 0.49 -1.3
3,129,872 + TX73_014280 0.55 +0.2
3,129,917 - TX73_014280 0.60 +0.3
3,129,941 + TX73_014280 0.63 +0.9

Or see this region's nucleotide sequence