Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_008345

Experiment: Sebacic (C); anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sebacic (C); anaerobic
1,803,976	-				-0.8
1,804,004	+				+0.1
1,804,012	-				-0.1
1,804,012	-				-0.5
1,804,039	+				-0.1
1,804,059	+				+1.0
1,804,085	-				-0.5
1,804,088	+				+0.4
1,804,130	+				-0.9
1,804,130	+				-0.6
1,804,138	-				-0.9
1,804,195	+				+0.1
1,804,209	-				-1.0
1,804,220	+				-0.7
1,804,225	+				+0.2
1,804,225	+				+0.3
1,804,225	+				-0.2
1,804,228	-				+1.0
1,804,235	+				-0.2
1,804,253	-				+0.4
1,804,267	-				-0.3
1,804,286	+				-0.5
1,804,292	+		TX73_008340	0.11	+0.5
1,804,294	-		TX73_008340	0.11	-0.0
1,804,300	-		TX73_008340	0.12	+0.3
1,804,300	-		TX73_008340	0.12	-1.3
1,804,349	+		TX73_008340	0.21	-0.4
1,804,379	-		TX73_008340	0.26	-0.1
1,804,398	+		TX73_008340	0.29	+0.0
1,804,398	-		TX73_008340	0.29	+1.4
1,804,434	-		TX73_008340	0.35	+1.1
1,804,434	-		TX73_008340	0.35	+0.2
1,804,444	-		TX73_008340	0.37	+0.7
1,804,461	-		TX73_008340	0.39	+0.1
1,804,466	+		TX73_008340	0.40	-0.0
1,804,466	+		TX73_008340	0.40	-0.5
1,804,470	-		TX73_008340	0.41	-0.3
1,804,471	+		TX73_008340	0.41	-0.8
1,804,474	-		TX73_008340	0.42	-0.5
1,804,474	-		TX73_008340	0.42	-0.3
1,804,474	-		TX73_008340	0.42	+0.4
1,804,521	+		TX73_008340	0.49	+0.4
1,804,527	+		TX73_008340	0.51	+0.1
1,804,540	+		TX73_008340	0.53	-0.0
1,804,545	+		TX73_008340	0.54	-0.0
1,804,552	-		TX73_008340	0.55	-0.6
1,804,567	-		TX73_008340	0.57	+0.1
1,804,599	+		TX73_008340	0.63	+0.2
1,804,602	-		TX73_008340	0.63	+1.1
1,804,607	+		TX73_008340	0.64	-0.8
1,804,607	-		TX73_008340	0.64	+0.9
1,804,607	-		TX73_008340	0.64	+0.5
1,804,612	-		TX73_008340	0.65	-2.5
1,804,612	-		TX73_008340	0.65	+0.9
1,804,645	-		TX73_008340	0.70	+0.5
1,804,686	-		TX73_008340	0.77	+0.3
1,804,697	+		TX73_008340	0.79	+0.3
1,804,697	+		TX73_008340	0.79	+0.7
1,804,705	-		TX73_008340	0.80	+1.1
1,804,705	-		TX73_008340	0.80	-1.2
1,804,705	-		TX73_008340	0.80	+0.5
1,804,705	-		TX73_008340	0.80	-1.2
1,804,705	-		TX73_008340	0.80	+1.1
1,804,705	-		TX73_008340	0.80	+1.6
1,804,705	-		TX73_008340	0.80	-0.1
1,804,707	-		TX73_008340	0.81	-0.0
1,804,756	+		TX73_008340	0.89	-0.6
1,804,771	-				+0.1
1,804,783	+				-1.3
1,804,791	-				+0.7
1,804,796	-				+0.0
1,804,839	+				-0.4
1,804,856	+				-1.0
1,804,856	+				-0.3
1,804,856	+				+0.5
1,804,856	+				+0.2
1,804,864	-				+0.5
1,804,864	-				+0.6
1,804,864	-				-0.1
1,804,864	-				+0.6
1,804,864	-				+1.0
1,804,864	-				+1.0
1,804,864	-				-0.2
1,804,864	-				+0.2
1,804,890	-				-1.0
1,804,911	-				-0.2
1,804,973	+				+0.8
1,804,973	+				-0.5
1,804,987	+		TX73_008345	0.12	-1.3
1,804,993	-		TX73_008345	0.13	-0.8
1,804,995	-		TX73_008345	0.13	-0.9
1,805,000	+		TX73_008345	0.14	-0.2
1,805,010	+		TX73_008345	0.16	+0.4
1,805,010	+		TX73_008345	0.16	-0.5
1,805,010	+		TX73_008345	0.16	-2.2
1,805,010	+		TX73_008345	0.16	+0.4
1,805,010	+		TX73_008345	0.16	+0.3
1,805,018	-		TX73_008345	0.18	-1.2
1,805,018	-		TX73_008345	0.18	-0.0
1,805,018	-		TX73_008345	0.18	-0.6
1,805,019	+		TX73_008345	0.18	+0.1
1,805,042	+		TX73_008345	0.22	-0.2
1,805,042	+		TX73_008345	0.22	+0.6
1,805,050	-		TX73_008345	0.24	-0.7
1,805,050	-		TX73_008345	0.24	+0.2
1,805,055	+		TX73_008345	0.25	+0.6
1,805,058	-		TX73_008345	0.26	-1.9
1,805,091	-		TX73_008345	0.32	-0.5
1,805,140	-		TX73_008345	0.42	-0.5
1,805,151	-		TX73_008345	0.44	+0.2
1,805,168	+		TX73_008345	0.47	-0.6
1,805,199	+		TX73_008345	0.53	-0.2
1,805,219	+		TX73_008345	0.57	-0.1
1,805,221	+		TX73_008345	0.58	+0.3
1,805,221	+		TX73_008345	0.58	+0.6
1,805,221	-		TX73_008345	0.58	-0.1
1,805,222	-		TX73_008345	0.58	+0.3
1,805,223	+		TX73_008345	0.58	-0.2
1,805,229	-		TX73_008345	0.59	-0.2
1,805,229	-		TX73_008345	0.59	-0.5
1,805,229	-		TX73_008345	0.59	-1.8
1,805,244	+		TX73_008345	0.62	+0.1
1,805,252	-		TX73_008345	0.64	+0.9
1,805,258	+		TX73_008345	0.65	-1.0
1,805,271	+		TX73_008345	0.68	-1.0
1,805,273	+		TX73_008345	0.68	+0.5
1,805,289	-		TX73_008345	0.71	-2.0
1,805,289	-		TX73_008345	0.71	-0.8
1,805,291	+		TX73_008345	0.72	-0.5
1,805,299	-		TX73_008345	0.73	+0.2
1,805,299	-		TX73_008345	0.73	-0.0
1,805,335	-		TX73_008345	0.80	+0.1
1,805,337	-		TX73_008345	0.81	+0.1
1,805,337	-		TX73_008345	0.81	+0.1
1,805,374	+		TX73_008345	0.88	-0.6
1,805,403	+				-1.3
1,805,403	+				+0.1
1,805,411	-				+0.1
1,805,418	-				+0.2
1,805,427	+				-0.2
1,805,443	-				+0.0
1,805,451	+				+0.1
1,805,459	-				-0.3
1,805,470	+				+0.1
1,805,560	+		TX73_008350	0.14	-2.3
1,805,560	+		TX73_008350	0.14	-3.0
1,805,563	-		TX73_008350	0.14	+0.7
1,805,568	-		TX73_008350	0.15	+0.1
1,805,604	-		TX73_008350	0.19	-2.2
1,805,615	-		TX73_008350	0.21	+0.4
1,805,637	-		TX73_008350	0.23	-1.9
1,805,670	-		TX73_008350	0.27	-0.1
1,805,670	-		TX73_008350	0.27	-1.5
1,805,698	+		TX73_008350	0.31	-0.9
1,805,739	+		TX73_008350	0.36	+0.1
1,805,742	+		TX73_008350	0.36	-2.8
1,805,796	+		TX73_008350	0.43	+0.1
1,805,796	+		TX73_008350	0.43	-1.5
1,805,804	-		TX73_008350	0.44	-1.9
1,805,804	-		TX73_008350	0.44	-0.5
1,805,804	-		TX73_008350	0.44	-0.9
1,805,810	-		TX73_008350	0.44	+0.4
1,805,838	+		TX73_008350	0.48	-1.5
1,805,840	-		TX73_008350	0.48	+2.1
1,805,868	+		TX73_008350	0.51	-2.0
1,805,869	+		TX73_008350	0.51	-1.7
1,805,869	+		TX73_008350	0.51	-0.7
1,805,869	+		TX73_008350	0.51	+0.4
1,805,877	-		TX73_008350	0.52	-1.2
1,805,877	-		TX73_008350	0.52	+1.7
1,805,909	+		TX73_008350	0.56	-1.2
1,805,909	-		TX73_008350	0.56	-0.5
1,805,912	+		TX73_008350	0.57	-0.2
1,805,920	-		TX73_008350	0.58	-1.2
1,805,920	-		TX73_008350	0.58	-0.9
1,805,954	+		TX73_008350	0.62	+1.7
1,805,954	+		TX73_008350	0.62	-2.6
1,805,954	+		TX73_008350	0.62	+0.1
1,805,959	+		TX73_008350	0.62	-0.2
1,805,959	+		TX73_008350	0.62	-1.1
1,805,964	+		TX73_008350	0.63	-1.0
1,806,040	-		TX73_008350	0.72	-0.9
1,806,042	+		TX73_008350	0.72	-1.0
1,806,042	+		TX73_008350	0.72	-0.5
1,806,042	+		TX73_008350	0.72	-0.7
1,806,042	+		TX73_008350	0.72	-1.3
1,806,042	+		TX73_008350	0.72	-0.7
1,806,042	+		TX73_008350	0.72	-0.5
1,806,042	+		TX73_008350	0.72	-0.9
1,806,042	+		TX73_008350	0.72	-1.2
1,806,050	-		TX73_008350	0.73	-1.5
1,806,050	-		TX73_008350	0.73	-1.4
1,806,062	+		TX73_008350	0.75	-0.9
1,806,062	+		TX73_008350	0.75	-0.9
1,806,062	+		TX73_008350	0.75	-1.5
1,806,069	-		TX73_008350	0.76	+1.1
1,806,069	-		TX73_008350	0.76	-0.2
1,806,074	-		TX73_008350	0.76	-0.5
1,806,080	+		TX73_008350	0.77	+0.1
1,806,080	-		TX73_008350	0.77	-1.5
1,806,085	+		TX73_008350	0.78	+3.1
1,806,090	+		TX73_008350	0.78	-0.9
1,806,093	-		TX73_008350	0.79	+0.3
1,806,138	+		TX73_008350	0.84	-0.5
1,806,141	-		TX73_008350	0.84	-1.5
1,806,167	-		TX73_008350	0.87	+0.1
1,806,182	-		TX73_008350	0.89	-0.5
1,806,197	-				-1.9
1,806,197	-				-1.9
1,806,197	-				-0.7
1,806,197	-				-1.5
1,806,202	-				-1.3
1,806,210	-				-1.2
1,806,219	-				+0.4
1,806,233	+				-0.0
1,806,233	+				+0.3
1,806,277	+				-1.3
1,806,277	+				+1.0
1,806,285	-				-0.5
1,806,285	-				+0.1
1,806,285	-				+1.2
1,806,344	+				-0.3
1,806,344	+				+0.0
1,806,352	+				-0.6
1,806,365	-				-0.4
1,806,406	-				+0.5
1,806,414	-				-1.3
1,806,428	+				-0.5
1,806,428	+				+0.5
1,806,428	+				-0.6