Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_002405

Experiment: Sebacic (C); anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntTX73_002395 and TX73_002400 are separated by 86 nucleotidesTX73_002400 and TX73_002405 are separated by 24 nucleotidesTX73_002405 and TX73_002410 are separated by 90 nucleotides TX73_002395: TX73_002395 - crotonase/enoyl-CoA hydratase family protein, at 509,766 to 510,671 _002395 TX73_002400: TX73_002400 - helix-turn-helix domain containing protein, at 510,758 to 511,387 _002400 TX73_002405: TX73_002405 - AMP-binding protein, at 511,412 to 513,037 _002405 TX73_002410: TX73_002410 - DUF1254 domain-containing protein, at 513,128 to 514,561 _002410 Position (kb) 511 512 513 514Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 510.520 kb on + strand, within TX73_002395at 510.581 kb on + strandat 510.600 kb on + strandat 510.608 kb on - strandat 510.802 kb on - strandat 510.883 kb on - strand, within TX73_002400at 510.883 kb on - strand, within TX73_002400at 510.883 kb on - strand, within TX73_002400at 510.908 kb on + strand, within TX73_002400at 510.943 kb on - strand, within TX73_002400at 510.962 kb on - strand, within TX73_002400at 510.988 kb on + strand, within TX73_002400at 511.053 kb on + strand, within TX73_002400at 511.101 kb on - strand, within TX73_002400at 511.102 kb on - strand, within TX73_002400at 511.134 kb on - strand, within TX73_002400at 511.216 kb on + strand, within TX73_002400at 511.326 kb on - strandat 511.381 kb on + strandat 511.414 kb on + strandat 511.446 kb on - strandat 511.474 kb on - strandat 511.474 kb on - strandat 511.524 kb on + strandat 511.532 kb on - strandat 511.553 kb on + strandat 511.561 kb on - strandat 511.567 kb on + strandat 511.599 kb on + strand, within TX73_002405at 511.607 kb on - strand, within TX73_002405at 511.607 kb on - strand, within TX73_002405at 511.609 kb on + strand, within TX73_002405at 511.609 kb on + strand, within TX73_002405at 511.612 kb on + strand, within TX73_002405at 511.612 kb on + strand, within TX73_002405at 511.617 kb on - strand, within TX73_002405at 511.667 kb on + strand, within TX73_002405at 511.685 kb on + strand, within TX73_002405at 511.714 kb on + strand, within TX73_002405at 511.732 kb on + strand, within TX73_002405at 511.732 kb on + strand, within TX73_002405at 511.732 kb on + strand, within TX73_002405at 511.735 kb on - strand, within TX73_002405at 511.740 kb on - strand, within TX73_002405at 511.752 kb on + strand, within TX73_002405at 511.752 kb on + strand, within TX73_002405at 511.778 kb on + strand, within TX73_002405at 511.780 kb on + strand, within TX73_002405at 511.809 kb on + strand, within TX73_002405at 511.844 kb on + strand, within TX73_002405at 511.844 kb on + strand, within TX73_002405at 511.844 kb on + strand, within TX73_002405at 511.852 kb on - strand, within TX73_002405at 511.852 kb on - strand, within TX73_002405at 511.852 kb on - strand, within TX73_002405at 511.852 kb on - strand, within TX73_002405at 511.916 kb on + strand, within TX73_002405at 511.987 kb on - strand, within TX73_002405at 511.988 kb on + strand, within TX73_002405at 511.998 kb on + strand, within TX73_002405at 511.998 kb on + strand, within TX73_002405at 511.998 kb on + strand, within TX73_002405at 512.008 kb on + strand, within TX73_002405at 512.016 kb on - strand, within TX73_002405at 512.016 kb on - strand, within TX73_002405at 512.016 kb on - strand, within TX73_002405at 512.016 kb on - strand, within TX73_002405at 512.016 kb on - strand, within TX73_002405at 512.016 kb on - strand, within TX73_002405at 512.022 kb on - strand, within TX73_002405at 512.045 kb on + strand, within TX73_002405at 512.071 kb on + strand, within TX73_002405at 512.095 kb on + strand, within TX73_002405at 512.098 kb on - strand, within TX73_002405at 512.151 kb on + strand, within TX73_002405at 512.169 kb on + strand, within TX73_002405at 512.177 kb on - strand, within TX73_002405at 512.224 kb on + strand, within TX73_002405at 512.291 kb on - strand, within TX73_002405at 512.292 kb on - strand, within TX73_002405at 512.294 kb on + strand, within TX73_002405at 512.316 kb on + strand, within TX73_002405at 512.437 kb on + strand, within TX73_002405at 512.445 kb on - strand, within TX73_002405at 512.491 kb on + strand, within TX73_002405at 512.491 kb on + strand, within TX73_002405at 512.545 kb on - strand, within TX73_002405at 512.604 kb on + strand, within TX73_002405at 512.604 kb on - strand, within TX73_002405at 512.612 kb on - strand, within TX73_002405at 512.644 kb on + strand, within TX73_002405at 512.651 kb on - strand, within TX73_002405at 512.654 kb on + strand, within TX73_002405at 512.705 kb on + strand, within TX73_002405at 512.737 kb on + strand, within TX73_002405at 512.775 kb on + strand, within TX73_002405at 512.793 kb on + strand, within TX73_002405at 512.846 kb on + strand, within TX73_002405at 512.904 kb on - strandat 512.912 kb on + strandat 512.920 kb on - strandat 513.033 kb on + strandat 513.034 kb on - strandat 513.061 kb on - strandat 513.072 kb on + strandat 513.107 kb on + strandat 513.112 kb on + strandat 513.115 kb on - strandat 513.167 kb on - strandat 513.196 kb on - strandat 513.230 kb on + strandat 513.284 kb on - strand, within TX73_002410at 513.396 kb on - strand, within TX73_002410at 513.535 kb on - strand, within TX73_002410at 513.546 kb on + strand, within TX73_002410at 513.603 kb on + strand, within TX73_002410at 513.652 kb on + strand, within TX73_002410at 513.720 kb on + strand, within TX73_002410at 513.728 kb on - strand, within TX73_002410at 513.756 kb on - strand, within TX73_002410at 513.759 kb on + strand, within TX73_002410at 513.785 kb on - strand, within TX73_002410at 513.811 kb on + strand, within TX73_002410at 513.849 kb on + strand, within TX73_002410at 513.941 kb on - strand, within TX73_002410at 513.996 kb on - strand, within TX73_002410at 513.998 kb on + strand, within TX73_002410

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Per-strain Table

Position Strand Gene LocusTag Fraction Sebacic (C); anaerobic
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510,520 + TX73_002395 0.83 -0.5
510,581 + +0.7
510,600 + -0.7
510,608 - -0.2
510,802 - +0.4
510,883 - TX73_002400 0.20 -0.2
510,883 - TX73_002400 0.20 +0.2
510,883 - TX73_002400 0.20 -0.1
510,908 + TX73_002400 0.24 -0.5
510,943 - TX73_002400 0.29 +0.7
510,962 - TX73_002400 0.32 +0.1
510,988 + TX73_002400 0.37 -1.4
511,053 + TX73_002400 0.47 -0.0
511,101 - TX73_002400 0.54 +0.5
511,102 - TX73_002400 0.55 -1.4
511,134 - TX73_002400 0.60 -0.2
511,216 + TX73_002400 0.73 +0.3
511,326 - -0.3
511,381 + -0.6
511,414 + -0.5
511,446 - +0.0
511,474 - -1.1
511,474 - +1.0
511,524 + -0.6
511,532 - +0.4
511,553 + +1.1
511,561 - +0.4
511,567 + +0.0
511,599 + TX73_002405 0.12 +0.7
511,607 - TX73_002405 0.12 +0.0
511,607 - TX73_002405 0.12 +0.3
511,609 + TX73_002405 0.12 +1.0
511,609 + TX73_002405 0.12 +0.3
511,612 + TX73_002405 0.12 +0.2
511,612 + TX73_002405 0.12 -0.2
511,617 - TX73_002405 0.13 -0.1
511,667 + TX73_002405 0.16 +0.1
511,685 + TX73_002405 0.17 -0.6
511,714 + TX73_002405 0.19 +0.3
511,732 + TX73_002405 0.20 -1.7
511,732 + TX73_002405 0.20 -1.6
511,732 + TX73_002405 0.20 +0.2
511,735 - TX73_002405 0.20 +1.2
511,740 - TX73_002405 0.20 +1.8
511,752 + TX73_002405 0.21 +0.0
511,752 + TX73_002405 0.21 +1.1
511,778 + TX73_002405 0.23 +0.3
511,780 + TX73_002405 0.23 +0.2
511,809 + TX73_002405 0.24 -0.2
511,844 + TX73_002405 0.27 +1.1
511,844 + TX73_002405 0.27 -0.9
511,844 + TX73_002405 0.27 +0.9
511,852 - TX73_002405 0.27 +0.3
511,852 - TX73_002405 0.27 -0.2
511,852 - TX73_002405 0.27 -0.2
511,852 - TX73_002405 0.27 +1.0
511,916 + TX73_002405 0.31 -0.2
511,987 - TX73_002405 0.35 +1.4
511,988 + TX73_002405 0.35 +0.9
511,998 + TX73_002405 0.36 -0.8
511,998 + TX73_002405 0.36 +0.0
511,998 + TX73_002405 0.36 +0.3
512,008 + TX73_002405 0.37 +0.3
512,016 - TX73_002405 0.37 -0.3
512,016 - TX73_002405 0.37 +0.3
512,016 - TX73_002405 0.37 -0.2
512,016 - TX73_002405 0.37 -0.6
512,016 - TX73_002405 0.37 -0.6
512,016 - TX73_002405 0.37 +0.4
512,022 - TX73_002405 0.38 -0.3
512,045 + TX73_002405 0.39 +0.3
512,071 + TX73_002405 0.41 -0.8
512,095 + TX73_002405 0.42 +0.4
512,098 - TX73_002405 0.42 +0.8
512,151 + TX73_002405 0.45 +0.2
512,169 + TX73_002405 0.47 +0.1
512,177 - TX73_002405 0.47 +0.9
512,224 + TX73_002405 0.50 +0.9
512,291 - TX73_002405 0.54 +0.2
512,292 - TX73_002405 0.54 +0.7
512,294 + TX73_002405 0.54 +1.9
512,316 + TX73_002405 0.56 +0.4
512,437 + TX73_002405 0.63 +0.7
512,445 - TX73_002405 0.64 +0.1
512,491 + TX73_002405 0.66 +0.4
512,491 + TX73_002405 0.66 +0.2
512,545 - TX73_002405 0.70 +0.5
512,604 + TX73_002405 0.73 -0.4
512,604 - TX73_002405 0.73 -0.1
512,612 - TX73_002405 0.74 -0.5
512,644 + TX73_002405 0.76 -1.1
512,651 - TX73_002405 0.76 -1.0
512,654 + TX73_002405 0.76 -0.3
512,705 + TX73_002405 0.80 -0.2
512,737 + TX73_002405 0.81 +0.5
512,775 + TX73_002405 0.84 +0.3
512,793 + TX73_002405 0.85 +0.5
512,846 + TX73_002405 0.88 -0.3
512,904 - +0.4
512,912 + -3.1
512,920 - -0.1
513,033 + +0.6
513,034 - +0.6
513,061 - +1.0
513,072 + -0.3
513,107 + +0.8
513,112 + -0.0
513,115 - +0.8
513,167 - -0.2
513,196 - -0.2
513,230 + +0.2
513,284 - TX73_002410 0.11 +0.5
513,396 - TX73_002410 0.19 -0.3
513,535 - TX73_002410 0.28 +0.3
513,546 + TX73_002410 0.29 +1.0
513,603 + TX73_002410 0.33 +1.2
513,652 + TX73_002410 0.37 +0.6
513,720 + TX73_002410 0.41 +0.6
513,728 - TX73_002410 0.42 +0.7
513,756 - TX73_002410 0.44 +0.7
513,759 + TX73_002410 0.44 +2.1
513,785 - TX73_002410 0.46 +0.2
513,811 + TX73_002410 0.48 +1.2
513,849 + TX73_002410 0.50 +1.6
513,941 - TX73_002410 0.57 -0.1
513,996 - TX73_002410 0.61 +0.6
513,998 + TX73_002410 0.61 +0.1

Or see this region's nucleotide sequence