Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_002745

Experiment: Pimelic (C); anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntTX73_002740 and TX73_002745 are separated by 130 nucleotidesTX73_002745 and TX73_002750 are separated by 281 nucleotides TX73_002740: TX73_002740 - bifunctional diguanylate cyclase/phosphodiesterase, at 588,150 to 589,892 _002740 TX73_002745: TX73_002745 - polyhydroxyalkanoate synthesis repressor PhaR, at 590,023 to 590,613 _002745 TX73_002750: TX73_002750 - acetyl-CoA C-acetyltransferase, at 590,895 to 592,073 _002750 Position (kb) 590 591Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 589.040 kb on - strand, within TX73_002740at 589.056 kb on - strand, within TX73_002740at 589.063 kb on - strand, within TX73_002740at 589.101 kb on + strand, within TX73_002740at 589.109 kb on - strand, within TX73_002740at 589.121 kb on - strand, within TX73_002740at 589.126 kb on + strand, within TX73_002740at 589.134 kb on - strand, within TX73_002740at 589.136 kb on - strand, within TX73_002740at 589.167 kb on + strand, within TX73_002740at 589.170 kb on - strand, within TX73_002740at 589.175 kb on - strand, within TX73_002740at 589.175 kb on - strand, within TX73_002740at 589.180 kb on - strand, within TX73_002740at 589.190 kb on - strand, within TX73_002740at 589.195 kb on - strand, within TX73_002740at 589.195 kb on - strand, within TX73_002740at 589.243 kb on - strand, within TX73_002740at 589.256 kb on + strand, within TX73_002740at 589.282 kb on - strand, within TX73_002740at 589.295 kb on + strand, within TX73_002740at 589.302 kb on - strand, within TX73_002740at 589.318 kb on + strand, within TX73_002740at 589.327 kb on + strand, within TX73_002740at 589.329 kb on + strand, within TX73_002740at 589.335 kb on - strand, within TX73_002740at 589.341 kb on - strand, within TX73_002740at 589.341 kb on - strand, within TX73_002740at 589.386 kb on - strand, within TX73_002740at 589.397 kb on - strand, within TX73_002740at 589.421 kb on - strand, within TX73_002740at 589.426 kb on + strand, within TX73_002740at 589.493 kb on - strand, within TX73_002740at 589.496 kb on + strand, within TX73_002740at 589.507 kb on + strand, within TX73_002740at 589.509 kb on - strand, within TX73_002740at 589.509 kb on - strand, within TX73_002740at 589.509 kb on - strand, within TX73_002740at 589.518 kb on - strand, within TX73_002740at 589.520 kb on + strand, within TX73_002740at 589.520 kb on - strand, within TX73_002740at 589.528 kb on - strand, within TX73_002740at 589.538 kb on + strand, within TX73_002740at 589.538 kb on + strand, within TX73_002740at 589.538 kb on + strand, within TX73_002740at 589.546 kb on - strand, within TX73_002740at 589.554 kb on - strand, within TX73_002740at 589.592 kb on - strand, within TX73_002740at 589.609 kb on - strand, within TX73_002740at 589.650 kb on + strand, within TX73_002740at 589.671 kb on + strand, within TX73_002740at 589.671 kb on + strand, within TX73_002740at 589.671 kb on + strand, within TX73_002740at 589.679 kb on - strand, within TX73_002740at 589.679 kb on - strand, within TX73_002740at 589.704 kb on + strand, within TX73_002740at 589.744 kb on - strandat 589.746 kb on + strandat 589.752 kb on + strandat 589.754 kb on - strandat 589.777 kb on - strandat 589.797 kb on + strandat 589.823 kb on - strandat 589.824 kb on + strandat 589.896 kb on + strandat 589.904 kb on - strandat 589.904 kb on - strandat 589.909 kb on + strandat 589.909 kb on + strandat 589.947 kb on + strandat 589.952 kb on - strandat 589.955 kb on - strandat 589.965 kb on - strandat 589.974 kb on + strandat 589.974 kb on + strandat 589.974 kb on + strandat 589.982 kb on - strandat 589.992 kb on - strandat 590.000 kb on + strandat 590.007 kb on + strandat 590.048 kb on + strandat 590.051 kb on - strandat 590.107 kb on - strand, within TX73_002745at 590.133 kb on - strand, within TX73_002745at 590.136 kb on + strand, within TX73_002745at 590.222 kb on + strand, within TX73_002745at 590.230 kb on - strand, within TX73_002745at 590.230 kb on - strand, within TX73_002745at 590.250 kb on + strand, within TX73_002745at 590.252 kb on - strand, within TX73_002745at 590.334 kb on - strand, within TX73_002745at 590.376 kb on + strand, within TX73_002745at 590.381 kb on - strand, within TX73_002745at 590.399 kb on - strand, within TX73_002745at 590.413 kb on + strand, within TX73_002745at 590.416 kb on - strand, within TX73_002745at 590.416 kb on - strand, within TX73_002745at 590.426 kb on + strand, within TX73_002745at 590.432 kb on + strand, within TX73_002745at 590.434 kb on - strand, within TX73_002745at 590.451 kb on + strand, within TX73_002745at 590.468 kb on + strand, within TX73_002745at 590.491 kb on - strand, within TX73_002745at 590.509 kb on - strand, within TX73_002745at 590.529 kb on - strand, within TX73_002745at 590.540 kb on + strand, within TX73_002745at 590.543 kb on - strand, within TX73_002745at 590.553 kb on - strand, within TX73_002745at 590.554 kb on + strand, within TX73_002745at 590.554 kb on + strand, within TX73_002745at 590.554 kb on + strand, within TX73_002745at 590.554 kb on + strand, within TX73_002745at 590.554 kb on + strand, within TX73_002745at 590.562 kb on - strandat 590.562 kb on - strandat 590.562 kb on - strandat 590.562 kb on - strandat 590.562 kb on - strandat 590.562 kb on - strandat 590.562 kb on - strandat 590.630 kb on - strandat 590.632 kb on + strandat 590.633 kb on - strandat 590.735 kb on + strandat 590.740 kb on + strandat 590.740 kb on + strandat 590.842 kb on + strandat 590.844 kb on - strandat 590.855 kb on + strandat 590.861 kb on - strandat 590.863 kb on - strandat 590.863 kb on - strandat 590.863 kb on - strandat 590.885 kb on + strandat 590.888 kb on - strandat 590.888 kb on - strandat 590.888 kb on - strandat 590.910 kb on + strandat 590.923 kb on - strandat 591.004 kb on - strandat 591.011 kb on + strandat 591.038 kb on + strand, within TX73_002750at 591.040 kb on + strand, within TX73_002750at 591.046 kb on - strand, within TX73_002750at 591.123 kb on + strand, within TX73_002750at 591.143 kb on + strand, within TX73_002750at 591.163 kb on + strand, within TX73_002750at 591.180 kb on + strand, within TX73_002750at 591.184 kb on + strand, within TX73_002750at 591.196 kb on - strand, within TX73_002750at 591.209 kb on - strand, within TX73_002750at 591.215 kb on + strand, within TX73_002750at 591.254 kb on - strand, within TX73_002750at 591.259 kb on - strand, within TX73_002750at 591.319 kb on - strand, within TX73_002750at 591.323 kb on + strand, within TX73_002750at 591.323 kb on + strand, within TX73_002750at 591.331 kb on - strand, within TX73_002750at 591.331 kb on - strand, within TX73_002750at 591.331 kb on - strand, within TX73_002750at 591.342 kb on - strand, within TX73_002750at 591.347 kb on + strand, within TX73_002750at 591.353 kb on - strand, within TX73_002750at 591.354 kb on + strand, within TX73_002750at 591.355 kb on - strand, within TX73_002750at 591.355 kb on - strand, within TX73_002750at 591.373 kb on - strand, within TX73_002750at 591.419 kb on + strand, within TX73_002750at 591.444 kb on - strand, within TX73_002750at 591.449 kb on + strand, within TX73_002750at 591.449 kb on + strand, within TX73_002750at 591.451 kb on - strand, within TX73_002750at 591.484 kb on - strand, within TX73_002750at 591.504 kb on + strand, within TX73_002750at 591.520 kb on - strand, within TX73_002750at 591.571 kb on + strand, within TX73_002750at 591.584 kb on + strand, within TX73_002750

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pimelic (C); anaerobic
remove
589,040 - TX73_002740 0.51 +0.7
589,056 - TX73_002740 0.52 -0.5
589,063 - TX73_002740 0.52 -0.2
589,101 + TX73_002740 0.55 +0.0
589,109 - TX73_002740 0.55 -0.3
589,121 - TX73_002740 0.56 +1.0
589,126 + TX73_002740 0.56 +0.4
589,134 - TX73_002740 0.56 +0.4
589,136 - TX73_002740 0.57 +0.8
589,167 + TX73_002740 0.58 +0.5
589,170 - TX73_002740 0.59 +0.1
589,175 - TX73_002740 0.59 -0.5
589,175 - TX73_002740 0.59 -0.5
589,180 - TX73_002740 0.59 -0.4
589,190 - TX73_002740 0.60 -1.5
589,195 - TX73_002740 0.60 -0.1
589,195 - TX73_002740 0.60 -0.8
589,243 - TX73_002740 0.63 -0.4
589,256 + TX73_002740 0.63 +0.1
589,282 - TX73_002740 0.65 -0.4
589,295 + TX73_002740 0.66 -0.0
589,302 - TX73_002740 0.66 -0.4
589,318 + TX73_002740 0.67 -0.2
589,327 + TX73_002740 0.68 -0.3
589,329 + TX73_002740 0.68 -0.4
589,335 - TX73_002740 0.68 +1.1
589,341 - TX73_002740 0.68 +0.4
589,341 - TX73_002740 0.68 +0.7
589,386 - TX73_002740 0.71 +1.0
589,397 - TX73_002740 0.72 -0.5
589,421 - TX73_002740 0.73 +0.4
589,426 + TX73_002740 0.73 -0.5
589,493 - TX73_002740 0.77 -0.5
589,496 + TX73_002740 0.77 -0.0
589,507 + TX73_002740 0.78 +0.2
589,509 - TX73_002740 0.78 +0.2
589,509 - TX73_002740 0.78 +0.7
589,509 - TX73_002740 0.78 -0.5
589,518 - TX73_002740 0.78 -0.2
589,520 + TX73_002740 0.79 -0.6
589,520 - TX73_002740 0.79 +1.3
589,528 - TX73_002740 0.79 -0.5
589,538 + TX73_002740 0.80 -0.1
589,538 + TX73_002740 0.80 -0.6
589,538 + TX73_002740 0.80 -0.3
589,546 - TX73_002740 0.80 +0.4
589,554 - TX73_002740 0.81 -0.4
589,592 - TX73_002740 0.83 -0.2
589,609 - TX73_002740 0.84 +1.0
589,650 + TX73_002740 0.86 +0.1
589,671 + TX73_002740 0.87 -1.5
589,671 + TX73_002740 0.87 +0.3
589,671 + TX73_002740 0.87 +0.6
589,679 - TX73_002740 0.88 -0.6
589,679 - TX73_002740 0.88 -0.6
589,704 + TX73_002740 0.89 -0.1
589,744 - -1.2
589,746 + +0.3
589,752 + +1.0
589,754 - +0.4
589,777 - +0.4
589,797 + +0.1
589,823 - -0.2
589,824 + +0.4
589,896 + -0.4
589,904 - -0.1
589,904 - -0.8
589,909 + +0.3
589,909 + -1.4
589,947 + -0.7
589,952 - -0.5
589,955 - -0.0
589,965 - +0.9
589,974 + -0.9
589,974 + -0.1
589,974 + +0.1
589,982 - -0.1
589,992 - -0.1
590,000 + +0.2
590,007 + +0.3
590,048 + +0.0
590,051 - -0.5
590,107 - TX73_002745 0.14 -0.3
590,133 - TX73_002745 0.19 -0.5
590,136 + TX73_002745 0.19 -1.7
590,222 + TX73_002745 0.34 -1.2
590,230 - TX73_002745 0.35 -4.6
590,230 - TX73_002745 0.35 -1.2
590,250 + TX73_002745 0.38 -0.5
590,252 - TX73_002745 0.39 +1.1
590,334 - TX73_002745 0.53 -1.4
590,376 + TX73_002745 0.60 +0.3
590,381 - TX73_002745 0.61 -2.4
590,399 - TX73_002745 0.64 -0.2
590,413 + TX73_002745 0.66 -1.9
590,416 - TX73_002745 0.66 -0.4
590,416 - TX73_002745 0.66 +0.5
590,426 + TX73_002745 0.68 -0.3
590,432 + TX73_002745 0.69 -0.1
590,434 - TX73_002745 0.70 -2.8
590,451 + TX73_002745 0.72 -0.4
590,468 + TX73_002745 0.75 -0.4
590,491 - TX73_002745 0.79 +0.1
590,509 - TX73_002745 0.82 -0.9
590,529 - TX73_002745 0.86 -1.5
590,540 + TX73_002745 0.87 -0.9
590,543 - TX73_002745 0.88 -1.4
590,553 - TX73_002745 0.90 -0.4
590,554 + TX73_002745 0.90 -0.4
590,554 + TX73_002745 0.90 -0.8
590,554 + TX73_002745 0.90 +0.0
590,554 + TX73_002745 0.90 -1.9
590,554 + TX73_002745 0.90 -0.2
590,562 - +2.3
590,562 - -1.9
590,562 - -1.7
590,562 - -1.0
590,562 - -0.5
590,562 - +0.6
590,562 - -0.6
590,630 - -1.1
590,632 + -0.3
590,633 - +0.2
590,735 + -0.5
590,740 + -1.2
590,740 + +0.3
590,842 + -1.0
590,844 - -0.3
590,855 + +0.2
590,861 - -0.6
590,863 - -0.1
590,863 - -1.2
590,863 - +0.2
590,885 + +0.2
590,888 - -0.4
590,888 - +1.1
590,888 - +0.6
590,910 + -0.3
590,923 - -0.0
591,004 - +0.6
591,011 + +0.5
591,038 + TX73_002750 0.12 -0.7
591,040 + TX73_002750 0.12 -0.0
591,046 - TX73_002750 0.13 +0.0
591,123 + TX73_002750 0.19 +0.5
591,143 + TX73_002750 0.21 -0.1
591,163 + TX73_002750 0.23 -0.3
591,180 + TX73_002750 0.24 -0.7
591,184 + TX73_002750 0.25 +0.3
591,196 - TX73_002750 0.26 +0.5
591,209 - TX73_002750 0.27 +0.9
591,215 + TX73_002750 0.27 -0.6
591,254 - TX73_002750 0.30 +0.1
591,259 - TX73_002750 0.31 +0.5
591,319 - TX73_002750 0.36 -1.7
591,323 + TX73_002750 0.36 +0.2
591,323 + TX73_002750 0.36 -0.5
591,331 - TX73_002750 0.37 -0.1
591,331 - TX73_002750 0.37 +0.0
591,331 - TX73_002750 0.37 -0.1
591,342 - TX73_002750 0.38 +0.4
591,347 + TX73_002750 0.38 -0.2
591,353 - TX73_002750 0.39 -0.7
591,354 + TX73_002750 0.39 +0.4
591,355 - TX73_002750 0.39 -1.4
591,355 - TX73_002750 0.39 -0.1
591,373 - TX73_002750 0.41 -2.3
591,419 + TX73_002750 0.44 -0.8
591,444 - TX73_002750 0.47 -0.8
591,449 + TX73_002750 0.47 -0.4
591,449 + TX73_002750 0.47 -0.2
591,451 - TX73_002750 0.47 +0.6
591,484 - TX73_002750 0.50 -0.5
591,504 + TX73_002750 0.52 -1.4
591,520 - TX73_002750 0.53 +0.7
591,571 + TX73_002750 0.57 -0.7
591,584 + TX73_002750 0.58 -0.2

Or see this region's nucleotide sequence