Experiment: Pimelic (C); anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt TX73_001880 and TX73_001885 are separated by 78 nucleotides TX73_001885 and TX73_001890 are separated by 93 nucleotides TX73_001890 and TX73_001895 are separated by 98 nucleotides TX73_001895 and TX73_001900 are separated by 209 nucleotides
TX73_001880: TX73_001880 - endonuclease/exonuclease/phosphatase family protein, at 393,538 to 394,665
_001880
TX73_001885: TX73_001885 - sulfite exporter TauE/SafE family protein, at 394,744 to 395,547
_001885
TX73_001890: TX73_001890 - MBL fold metallo-hydrolase, at 395,641 to 396,537
_001890
TX73_001895: TX73_001895 - hypothetical protein, at 396,636 to 396,998
_001895
TX73_001900: TX73_001900 - RNA polymerase sigma factor RpoH, at 397,208 to 398,107
_001900
Position (kb) 395
396
397 Strain fitness (log2 ratio) -2
-1
0
1
2 at 394.650 kb on + strand at 394.817 kb on - strand at 394.827 kb on - strand, within TX73_001885 at 394.875 kb on - strand, within TX73_001885 at 394.911 kb on + strand, within TX73_001885 at 394.933 kb on - strand, within TX73_001885 at 394.996 kb on - strand, within TX73_001885 at 394.997 kb on + strand, within TX73_001885 at 395.002 kb on + strand, within TX73_001885 at 395.002 kb on + strand, within TX73_001885 at 395.010 kb on - strand, within TX73_001885 at 395.028 kb on - strand, within TX73_001885 at 395.107 kb on - strand, within TX73_001885 at 395.129 kb on + strand, within TX73_001885 at 395.132 kb on - strand, within TX73_001885 at 395.142 kb on - strand, within TX73_001885 at 395.204 kb on + strand, within TX73_001885 at 395.214 kb on - strand, within TX73_001885 at 395.299 kb on + strand, within TX73_001885 at 395.299 kb on + strand, within TX73_001885 at 395.299 kb on + strand, within TX73_001885 at 395.307 kb on - strand, within TX73_001885 at 395.307 kb on - strand, within TX73_001885 at 395.307 kb on - strand, within TX73_001885 at 395.307 kb on - strand, within TX73_001885 at 395.309 kb on + strand, within TX73_001885 at 395.314 kb on + strand, within TX73_001885 at 395.320 kb on + strand, within TX73_001885 at 395.343 kb on - strand, within TX73_001885 at 395.347 kb on - strand, within TX73_001885 at 395.349 kb on - strand, within TX73_001885 at 395.350 kb on - strand, within TX73_001885 at 395.351 kb on + strand, within TX73_001885 at 395.353 kb on - strand, within TX73_001885 at 395.420 kb on - strand, within TX73_001885 at 395.429 kb on - strand, within TX73_001885 at 395.429 kb on - strand, within TX73_001885 at 395.431 kb on + strand, within TX73_001885 at 395.434 kb on - strand, within TX73_001885 at 395.437 kb on - strand, within TX73_001885 at 395.446 kb on + strand, within TX73_001885 at 395.465 kb on + strand, within TX73_001885 at 395.465 kb on + strand, within TX73_001885 at 395.473 kb on - strand at 395.483 kb on - strand at 395.491 kb on + strand at 395.494 kb on - strand at 395.499 kb on - strand at 395.509 kb on - strand at 395.513 kb on + strand at 395.624 kb on + strand at 395.632 kb on - strand at 395.632 kb on - strand at 395.637 kb on - strand at 395.637 kb on - strand at 395.638 kb on + strand at 395.638 kb on + strand at 395.646 kb on - strand at 395.652 kb on + strand at 395.688 kb on + strand at 395.700 kb on + strand at 395.700 kb on + strand at 395.700 kb on + strand at 395.700 kb on + strand at 395.719 kb on - strand at 395.752 kb on + strand, within TX73_001890 at 395.759 kb on + strand, within TX73_001890 at 395.759 kb on + strand, within TX73_001890 at 395.759 kb on + strand, within TX73_001890 at 395.759 kb on + strand, within TX73_001890 at 395.759 kb on + strand, within TX73_001890 at 395.759 kb on + strand, within TX73_001890 at 395.759 kb on + strand, within TX73_001890 at 395.760 kb on - strand, within TX73_001890 at 395.760 kb on - strand, within TX73_001890 at 395.762 kb on - strand, within TX73_001890 at 395.766 kb on - strand, within TX73_001890 at 395.767 kb on - strand, within TX73_001890 at 395.767 kb on - strand, within TX73_001890 at 395.767 kb on - strand, within TX73_001890 at 395.767 kb on - strand, within TX73_001890 at 395.767 kb on - strand, within TX73_001890 at 395.767 kb on - strand, within TX73_001890 at 395.767 kb on - strand, within TX73_001890 at 395.770 kb on + strand, within TX73_001890 at 395.796 kb on + strand, within TX73_001890 at 395.806 kb on + strand, within TX73_001890 at 395.808 kb on + strand, within TX73_001890 at 395.808 kb on + strand, within TX73_001890 at 395.809 kb on - strand, within TX73_001890 at 395.814 kb on - strand, within TX73_001890 at 395.814 kb on - strand, within TX73_001890 at 395.816 kb on - strand, within TX73_001890 at 395.816 kb on - strand, within TX73_001890 at 395.816 kb on - strand, within TX73_001890 at 395.832 kb on + strand, within TX73_001890 at 395.832 kb on + strand, within TX73_001890 at 395.851 kb on + strand, within TX73_001890 at 395.856 kb on + strand, within TX73_001890 at 395.856 kb on - strand, within TX73_001890 at 395.857 kb on + strand, within TX73_001890 at 395.857 kb on + strand, within TX73_001890 at 395.859 kb on - strand, within TX73_001890 at 395.862 kb on + strand, within TX73_001890 at 395.865 kb on - strand, within TX73_001890 at 395.866 kb on - strand, within TX73_001890 at 395.875 kb on + strand, within TX73_001890 at 395.885 kb on - strand, within TX73_001890 at 395.890 kb on + strand, within TX73_001890 at 395.890 kb on + strand, within TX73_001890 at 395.890 kb on + strand, within TX73_001890 at 395.898 kb on - strand, within TX73_001890 at 395.898 kb on - strand, within TX73_001890 at 395.898 kb on - strand, within TX73_001890 at 395.901 kb on + strand, within TX73_001890 at 395.903 kb on - strand, within TX73_001890 at 395.919 kb on + strand, within TX73_001890 at 395.919 kb on + strand, within TX73_001890 at 395.927 kb on - strand, within TX73_001890 at 395.937 kb on + strand, within TX73_001890 at 395.937 kb on + strand, within TX73_001890 at 395.937 kb on + strand, within TX73_001890 at 395.937 kb on + strand, within TX73_001890 at 395.937 kb on + strand, within TX73_001890 at 395.945 kb on - strand, within TX73_001890 at 395.945 kb on - strand, within TX73_001890 at 395.945 kb on - strand, within TX73_001890 at 395.970 kb on + strand, within TX73_001890 at 395.978 kb on - strand, within TX73_001890 at 395.978 kb on - strand, within TX73_001890 at 396.026 kb on - strand, within TX73_001890 at 396.026 kb on - strand, within TX73_001890 at 396.026 kb on - strand, within TX73_001890 at 396.026 kb on - strand, within TX73_001890 at 396.036 kb on + strand, within TX73_001890 at 396.036 kb on + strand, within TX73_001890 at 396.051 kb on - strand, within TX73_001890 at 396.056 kb on + strand, within TX73_001890 at 396.059 kb on - strand, within TX73_001890 at 396.064 kb on - strand, within TX73_001890 at 396.069 kb on + strand, within TX73_001890 at 396.069 kb on + strand, within TX73_001890 at 396.070 kb on - strand, within TX73_001890 at 396.075 kb on - strand, within TX73_001890 at 396.080 kb on + strand, within TX73_001890 at 396.088 kb on - strand, within TX73_001890 at 396.088 kb on - strand, within TX73_001890 at 396.092 kb on - strand, within TX73_001890 at 396.096 kb on - strand, within TX73_001890 at 396.131 kb on - strand, within TX73_001890 at 396.141 kb on + strand, within TX73_001890 at 396.141 kb on + strand, within TX73_001890 at 396.141 kb on + strand, within TX73_001890 at 396.141 kb on + strand, within TX73_001890 at 396.141 kb on + strand, within TX73_001890 at 396.141 kb on + strand, within TX73_001890 at 396.141 kb on + strand, within TX73_001890 at 396.141 kb on + strand, within TX73_001890 at 396.149 kb on - strand, within TX73_001890 at 396.149 kb on - strand, within TX73_001890 at 396.149 kb on - strand, within TX73_001890 at 396.149 kb on - strand, within TX73_001890 at 396.159 kb on - strand, within TX73_001890 at 396.161 kb on - strand, within TX73_001890 at 396.209 kb on - strand, within TX73_001890 at 396.211 kb on + strand, within TX73_001890 at 396.235 kb on + strand, within TX73_001890 at 396.243 kb on - strand, within TX73_001890 at 396.243 kb on - strand, within TX73_001890 at 396.244 kb on + strand, within TX73_001890 at 396.263 kb on + strand, within TX73_001890 at 396.284 kb on + strand, within TX73_001890 at 396.293 kb on - strand, within TX73_001890 at 396.294 kb on - strand, within TX73_001890 at 396.310 kb on - strand, within TX73_001890 at 396.320 kb on - strand, within TX73_001890 at 396.349 kb on - strand, within TX73_001890 at 396.362 kb on + strand, within TX73_001890 at 396.394 kb on + strand, within TX73_001890 at 396.402 kb on - strand, within TX73_001890 at 396.402 kb on - strand, within TX73_001890 at 396.432 kb on + strand, within TX73_001890 at 396.438 kb on + strand, within TX73_001890 at 396.438 kb on + strand, within TX73_001890 at 396.468 kb on + strand at 396.468 kb on + strand at 396.468 kb on + strand at 396.476 kb on - strand at 396.476 kb on - strand at 396.476 kb on - strand at 396.489 kb on + strand at 396.489 kb on + strand at 396.493 kb on - strand at 396.497 kb on - strand at 396.527 kb on + strand at 396.570 kb on + strand at 396.580 kb on + strand at 396.587 kb on + strand at 396.588 kb on - strand at 396.588 kb on - strand at 396.588 kb on - strand at 396.590 kb on - strand at 396.594 kb on + strand at 396.595 kb on - strand at 396.595 kb on - strand at 396.621 kb on - strand at 396.644 kb on + strand at 396.644 kb on + strand at 396.646 kb on - strand at 396.652 kb on - strand at 396.652 kb on - strand at 396.679 kb on - strand, within TX73_001895 at 396.710 kb on + strand, within TX73_001895 at 396.718 kb on - strand, within TX73_001895 at 396.718 kb on - strand, within TX73_001895 at 396.739 kb on - strand, within TX73_001895 at 396.773 kb on + strand, within TX73_001895 at 396.795 kb on + strand, within TX73_001895 at 396.815 kb on + strand, within TX73_001895 at 396.823 kb on - strand, within TX73_001895 at 396.823 kb on - strand, within TX73_001895 at 396.845 kb on + strand, within TX73_001895 at 396.890 kb on + strand, within TX73_001895 at 396.890 kb on + strand, within TX73_001895 at 396.896 kb on + strand, within TX73_001895 at 396.965 kb on - strand at 396.971 kb on + strand at 396.976 kb on - strand at 397.002 kb on - strand at 397.052 kb on - strand at 397.064 kb on + strand at 397.074 kb on + strand at 397.112 kb on - strand at 397.123 kb on + strand at 397.123 kb on + strand at 397.142 kb on - strand at 397.171 kb on + strand at 397.176 kb on + strand at 397.184 kb on - strand at 397.185 kb on + strand at 397.185 kb on + strand at 397.190 kb on + strand at 397.190 kb on + strand at 397.191 kb on - strand at 397.193 kb on - strand at 397.193 kb on - strand at 397.193 kb on - strand at 397.193 kb on - strand at 397.193 kb on - strand at 397.213 kb on + strand at 397.218 kb on + strand at 397.218 kb on + strand at 397.253 kb on + strand at 397.261 kb on - strand at 397.261 kb on - strand at 397.266 kb on + strand at 397.271 kb on - strand at 397.273 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pimelic (C); anaerobic remove 394,650 + -0.4 394,817 - +0.2 394,827 - TX73_001885 0.10 +0.4 394,875 - TX73_001885 0.16 +0.4 394,911 + TX73_001885 0.21 +0.3 394,933 - TX73_001885 0.24 +0.0 394,996 - TX73_001885 0.31 +0.1 394,997 + TX73_001885 0.31 -0.7 395,002 + TX73_001885 0.32 +0.5 395,002 + TX73_001885 0.32 +0.8 395,010 - TX73_001885 0.33 +1.1 395,028 - TX73_001885 0.35 +0.9 395,107 - TX73_001885 0.45 +0.0 395,129 + TX73_001885 0.48 +0.0 395,132 - TX73_001885 0.48 +0.9 395,142 - TX73_001885 0.50 -2.0 395,204 + TX73_001885 0.57 -0.5 395,214 - TX73_001885 0.58 -0.3 395,299 + TX73_001885 0.69 +0.3 395,299 + TX73_001885 0.69 -1.6 395,299 + TX73_001885 0.69 +1.0 395,307 - TX73_001885 0.70 -1.2 395,307 - TX73_001885 0.70 +0.8 395,307 - TX73_001885 0.70 +1.4 395,307 - TX73_001885 0.70 -0.3 395,309 + TX73_001885 0.70 -0.1 395,314 + TX73_001885 0.71 -0.9 395,320 + TX73_001885 0.72 -0.4 395,343 - TX73_001885 0.75 +0.5 395,347 - TX73_001885 0.75 +0.6 395,349 - TX73_001885 0.75 +1.1 395,350 - TX73_001885 0.75 -0.5 395,351 + TX73_001885 0.75 +0.2 395,353 - TX73_001885 0.76 -0.2 395,420 - TX73_001885 0.84 -0.5 395,429 - TX73_001885 0.85 -0.2 395,429 - TX73_001885 0.85 -0.1 395,431 + TX73_001885 0.85 +0.1 395,434 - TX73_001885 0.86 +0.9 395,437 - TX73_001885 0.86 +0.4 395,446 + TX73_001885 0.87 +0.5 395,465 + TX73_001885 0.90 -0.6 395,465 + TX73_001885 0.90 -0.3 395,473 - +0.9 395,483 - +0.3 395,491 + -0.3 395,494 - -0.5 395,499 - -0.0 395,509 - -0.2 395,513 + -0.9 395,624 + -0.3 395,632 - +0.2 395,632 - +0.9 395,637 - +0.3 395,637 - +0.4 395,638 + -0.2 395,638 + +0.5 395,646 - -0.3 395,652 + -0.1 395,688 + -0.2 395,700 + +0.7 395,700 + -1.3 395,700 + +1.1 395,700 + +0.3 395,719 - -0.7 395,752 + TX73_001890 0.12 -0.2 395,759 + TX73_001890 0.13 +0.2 395,759 + TX73_001890 0.13 +0.2 395,759 + TX73_001890 0.13 -0.7 395,759 + TX73_001890 0.13 -0.5 395,759 + TX73_001890 0.13 -2.2 395,759 + TX73_001890 0.13 +0.3 395,759 + TX73_001890 0.13 +0.5 395,760 - TX73_001890 0.13 -0.4 395,760 - TX73_001890 0.13 -0.8 395,762 - TX73_001890 0.13 +1.1 395,766 - TX73_001890 0.14 -0.1 395,767 - TX73_001890 0.14 -0.2 395,767 - TX73_001890 0.14 -0.1 395,767 - TX73_001890 0.14 +0.6 395,767 - TX73_001890 0.14 -0.6 395,767 - TX73_001890 0.14 -0.4 395,767 - TX73_001890 0.14 +0.5 395,767 - TX73_001890 0.14 -0.5 395,770 + TX73_001890 0.14 +0.0 395,796 + TX73_001890 0.17 +0.5 395,806 + TX73_001890 0.18 -0.7 395,808 + TX73_001890 0.19 -0.2 395,808 + TX73_001890 0.19 -0.7 395,809 - TX73_001890 0.19 -0.1 395,814 - TX73_001890 0.19 +0.1 395,814 - TX73_001890 0.19 +0.1 395,816 - TX73_001890 0.20 +0.0 395,816 - TX73_001890 0.20 -0.9 395,816 - TX73_001890 0.20 -0.8 395,832 + TX73_001890 0.21 +0.4 395,832 + TX73_001890 0.21 -0.1 395,851 + TX73_001890 0.23 +0.5 395,856 + TX73_001890 0.24 -0.0 395,856 - TX73_001890 0.24 +1.1 395,857 + TX73_001890 0.24 -0.7 395,857 + TX73_001890 0.24 -0.2 395,859 - TX73_001890 0.24 -1.1 395,862 + TX73_001890 0.25 +0.3 395,865 - TX73_001890 0.25 -0.1 395,866 - TX73_001890 0.25 +0.8 395,875 + TX73_001890 0.26 -0.2 395,885 - TX73_001890 0.27 -0.3 395,890 + TX73_001890 0.28 -0.2 395,890 + TX73_001890 0.28 -0.2 395,890 + TX73_001890 0.28 +0.2 395,898 - TX73_001890 0.29 -1.2 395,898 - TX73_001890 0.29 -0.7 395,898 - TX73_001890 0.29 +0.5 395,901 + TX73_001890 0.29 -0.3 395,903 - TX73_001890 0.29 +0.0 395,919 + TX73_001890 0.31 +0.2 395,919 + TX73_001890 0.31 +0.9 395,927 - TX73_001890 0.32 -0.3 395,937 + TX73_001890 0.33 -0.2 395,937 + TX73_001890 0.33 +0.8 395,937 + TX73_001890 0.33 +0.2 395,937 + TX73_001890 0.33 +0.4 395,937 + TX73_001890 0.33 -0.7 395,945 - TX73_001890 0.34 -0.4 395,945 - TX73_001890 0.34 -0.1 395,945 - TX73_001890 0.34 +0.9 395,970 + TX73_001890 0.37 -0.6 395,978 - TX73_001890 0.38 -0.5 395,978 - TX73_001890 0.38 +0.1 396,026 - TX73_001890 0.43 +0.7 396,026 - TX73_001890 0.43 +0.4 396,026 - TX73_001890 0.43 -0.1 396,026 - TX73_001890 0.43 -0.2 396,036 + TX73_001890 0.44 +0.3 396,036 + TX73_001890 0.44 +0.2 396,051 - TX73_001890 0.46 -0.4 396,056 + TX73_001890 0.46 -0.1 396,059 - TX73_001890 0.47 -0.9 396,064 - TX73_001890 0.47 -0.5 396,069 + TX73_001890 0.48 +0.8 396,069 + TX73_001890 0.48 -0.1 396,070 - TX73_001890 0.48 +0.5 396,075 - TX73_001890 0.48 -0.2 396,080 + TX73_001890 0.49 -0.9 396,088 - TX73_001890 0.50 +0.5 396,088 - TX73_001890 0.50 +0.6 396,092 - TX73_001890 0.50 -0.2 396,096 - TX73_001890 0.51 +1.1 396,131 - TX73_001890 0.55 -0.4 396,141 + TX73_001890 0.56 -0.1 396,141 + TX73_001890 0.56 +0.0 396,141 + TX73_001890 0.56 -0.5 396,141 + TX73_001890 0.56 -0.4 396,141 + TX73_001890 0.56 -0.2 396,141 + TX73_001890 0.56 -0.4 396,141 + TX73_001890 0.56 +0.2 396,141 + TX73_001890 0.56 +0.6 396,149 - TX73_001890 0.57 -0.3 396,149 - TX73_001890 0.57 -0.4 396,149 - TX73_001890 0.57 +0.5 396,149 - TX73_001890 0.57 +0.3 396,159 - TX73_001890 0.58 +2.1 396,161 - TX73_001890 0.58 +0.4 396,209 - TX73_001890 0.63 -0.8 396,211 + TX73_001890 0.64 -0.3 396,235 + TX73_001890 0.66 +0.3 396,243 - TX73_001890 0.67 -1.7 396,243 - TX73_001890 0.67 +0.3 396,244 + TX73_001890 0.67 +0.1 396,263 + TX73_001890 0.69 +0.0 396,284 + TX73_001890 0.72 +0.5 396,293 - TX73_001890 0.73 +0.4 396,294 - TX73_001890 0.73 -0.3 396,310 - TX73_001890 0.75 +0.0 396,320 - TX73_001890 0.76 +0.2 396,349 - TX73_001890 0.79 -0.5 396,362 + TX73_001890 0.80 +0.4 396,394 + TX73_001890 0.84 -0.0 396,402 - TX73_001890 0.85 +0.1 396,402 - TX73_001890 0.85 +0.2 396,432 + TX73_001890 0.88 -0.3 396,438 + TX73_001890 0.89 -0.8 396,438 + TX73_001890 0.89 -0.3 396,468 + -1.5 396,468 + -0.9 396,468 + -1.0 396,476 - +0.7 396,476 - +0.3 396,476 - +0.6 396,489 + -0.6 396,489 + -0.2 396,493 - +0.5 396,497 - -0.2 396,527 + -0.2 396,570 + -0.6 396,580 + +0.1 396,587 + -1.7 396,588 - -0.3 396,588 - -0.5 396,588 - -0.4 396,590 - +0.6 396,594 + +0.2 396,595 - -0.2 396,595 - -0.8 396,621 - +1.0 396,644 + +0.4 396,644 + -2.7 396,646 - +0.3 396,652 - +0.0 396,652 - +0.5 396,679 - TX73_001895 0.12 +0.2 396,710 + TX73_001895 0.20 +0.3 396,718 - TX73_001895 0.23 -0.0 396,718 - TX73_001895 0.23 -0.9 396,739 - TX73_001895 0.28 +0.6 396,773 + TX73_001895 0.38 +0.3 396,795 + TX73_001895 0.44 +0.0 396,815 + TX73_001895 0.49 -1.6 396,823 - TX73_001895 0.52 +0.3 396,823 - TX73_001895 0.52 +0.1 396,845 + TX73_001895 0.58 +0.9 396,890 + TX73_001895 0.70 +0.4 396,890 + TX73_001895 0.70 +0.2 396,896 + TX73_001895 0.72 -0.7 396,965 - -1.5 396,971 + -1.1 396,976 - -1.0 397,002 - -0.5 397,052 - -0.7 397,064 + +1.0 397,074 + +0.3 397,112 - -0.3 397,123 + +0.4 397,123 + +0.4 397,142 - -0.2 397,171 + +0.2 397,176 + -0.2 397,184 - +0.0 397,185 + -0.4 397,185 + -0.1 397,190 + -0.0 397,190 + +0.2 397,191 - +0.4 397,193 - -0.2 397,193 - -0.4 397,193 - -0.0 397,193 - +0.1 397,193 - +0.7 397,213 + +0.2 397,218 + -1.0 397,218 + +0.3 397,253 + -0.6 397,261 - -0.4 397,261 - +1.0 397,266 + -0.4 397,271 - +0.1 397,273 - -0.0
Or see this region's nucleotide sequence