Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_005440

Experiment: Pimelic (C); anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pimelic (C); anaerobic
1,166,322	+		TX73_005435	0.18	-1.4
1,166,326	+		TX73_005435	0.19	-0.4
1,166,365	+		TX73_005435	0.26	-0.9
1,166,372	+		TX73_005435	0.27	+0.1
1,166,390	-		TX73_005435	0.30	-1.4
1,166,397	-		TX73_005435	0.31	-1.5
1,166,419	+		TX73_005435	0.35	-0.4
1,166,450	+		TX73_005435	0.41	-1.8
1,166,474	-		TX73_005435	0.45	-2.0
1,166,510	-		TX73_005435	0.51	-2.0
1,166,513	+		TX73_005435	0.52	-1.4
1,166,513	+		TX73_005435	0.52	+0.2
1,166,513	+		TX73_005435	0.52	+0.9
1,166,513	+		TX73_005435	0.52	+0.4
1,166,513	+		TX73_005435	0.52	-1.1
1,166,521	-		TX73_005435	0.53	-0.4
1,166,523	+		TX73_005435	0.54	-0.5
1,166,528	+		TX73_005435	0.54	+0.6
1,166,533	+		TX73_005435	0.55	+0.2
1,166,536	-		TX73_005435	0.56	-1.6
1,166,557	+		TX73_005435	0.59	-2.3
1,166,563	+		TX73_005435	0.61	-0.1
1,166,565	-		TX73_005435	0.61	-1.1
1,166,571	-		TX73_005435	0.62	-1.9
1,166,571	-		TX73_005435	0.62	-0.4
1,166,621	+		TX73_005435	0.71	-0.6
1,166,638	+		TX73_005435	0.74	-0.4
1,166,638	+		TX73_005435	0.74	+0.2
1,166,638	+		TX73_005435	0.74	-1.0
1,166,641	-		TX73_005435	0.74	+0.2
1,166,641	-		TX73_005435	0.74	-1.6
1,166,668	+		TX73_005435	0.79	-1.1
1,166,692	+		TX73_005435	0.83	-0.3
1,166,692	-		TX73_005435	0.83	-0.9
1,166,722	+		TX73_005435	0.88	+1.8
1,166,740	-				-0.4
1,166,742	+				+0.7
1,166,742	+				+0.8
1,166,742	+				+0.1
1,166,748	+				-0.5
1,166,748	+				+0.0
1,166,748	+				-0.1
1,166,748	+				+1.2
1,166,759	+				-0.6
1,166,759	+				+0.4
1,166,759	+				+0.2
1,166,764	+				+0.7
1,166,764	+				-1.1
1,166,767	-				-0.6
1,166,774	+				-0.3
1,166,774	+				+1.5
1,166,781	+				-0.4
1,166,782	+				-0.1
1,166,795	-				-0.4
1,166,810	-				+0.3
1,166,823	-				-0.6
1,166,872	-				+0.5
1,166,919	+				-0.8
1,166,931	+				-1.1
1,166,931	+				+0.8
1,166,931	+				+0.3
1,166,933	+				+1.2
1,166,941	-				-0.9
1,166,955	+				+0.2
1,166,955	-				+0.4
1,166,963	-				-0.5
1,166,968	+				-0.2
1,166,976	-				+0.1
1,167,043	+				-0.7
1,167,043	+				+0.3
1,167,046	-				-0.2
1,167,046	-				-0.6
1,167,064	-				+1.0
1,167,064	-				-0.2
1,167,083	+				+0.2
1,167,099	+				+0.4
1,167,111	+				-0.6
1,167,119	+				-0.2
1,167,119	+				-0.1
1,167,149	-				+0.5
1,167,156	-				-1.2
1,167,167	+				+0.3
1,167,175	-				+0.4
1,167,240	-				-0.3
1,167,291	+				+0.4
1,167,291	+				-0.3
1,167,299	-				+0.5
1,167,299	-				+0.2
1,167,336	+				+0.0
1,167,348	+				-0.8
1,167,357	+				+0.1
1,167,377	+				+1.2
1,167,390	-				+0.3
1,167,395	+				-0.2
1,167,400	-				+0.3
1,167,401	-				-0.2
1,167,403	-				+0.5
1,167,403	-				+0.1
1,167,403	-				-0.1
1,167,403	-				+0.9
1,167,426	+		TX73_005440	0.11	+0.3
1,167,455	-		TX73_005440	0.14	-0.5
1,167,468	+		TX73_005440	0.15	+0.4
1,167,468	+		TX73_005440	0.15	-0.7
1,167,470	+		TX73_005440	0.15	-0.2
1,167,476	-		TX73_005440	0.16	-0.2
1,167,500	+		TX73_005440	0.18	+0.9
1,167,500	+		TX73_005440	0.18	-0.1
1,167,501	+		TX73_005440	0.18	+0.5
1,167,503	-		TX73_005440	0.19	-0.3
1,167,521	+		TX73_005440	0.20	-0.0
1,167,526	+		TX73_005440	0.21	-0.2
1,167,537	+		TX73_005440	0.22	-0.8
1,167,572	-		TX73_005440	0.25	-0.4
1,167,594	-		TX73_005440	0.28	+0.4
1,167,607	+		TX73_005440	0.29	+2.4
1,167,608	-		TX73_005440	0.29	+0.2
1,167,618	+		TX73_005440	0.30	+0.3
1,167,620	-		TX73_005440	0.30	-1.1
1,167,625	-		TX73_005440	0.31	-0.6
1,167,659	+		TX73_005440	0.34	-1.2
1,167,659	+		TX73_005440	0.34	+0.5
1,167,659	+		TX73_005440	0.34	-0.8
1,167,667	-		TX73_005440	0.35	-0.3
1,167,701	-		TX73_005440	0.38	-0.6
1,167,702	+		TX73_005440	0.38	-0.0
1,167,725	+		TX73_005440	0.40	-0.4
1,167,740	+		TX73_005440	0.42	-0.2
1,167,779	+		TX73_005440	0.46	-0.4
1,167,787	-		TX73_005440	0.46	-0.0
1,167,831	+		TX73_005440	0.51	-1.8
1,167,832	+		TX73_005440	0.51	-0.0
1,167,840	-		TX73_005440	0.52	-1.0
1,167,856	+		TX73_005440	0.53	-1.4
1,167,861	+		TX73_005440	0.54	-0.5
1,167,863	+		TX73_005440	0.54	+0.9
1,167,925	+		TX73_005440	0.60	+0.0
1,167,926	-		TX73_005440	0.60	-0.2
1,167,934	+		TX73_005440	0.61	-1.1
1,167,948	-		TX73_005440	0.62	+0.2
1,167,966	-		TX73_005440	0.64	-0.6
1,168,017	+		TX73_005440	0.69	-0.5
1,168,025	-		TX73_005440	0.70	-0.7
1,168,039	+		TX73_005440	0.71	-0.4
1,168,039	+		TX73_005440	0.71	-1.1
1,168,081	+		TX73_005440	0.75	-0.4
1,168,203	-		TX73_005440	0.87	+0.2
1,168,338	-				-1.6
1,168,382	+				-0.6
1,168,462	-				-0.2
1,168,469	-				-0.6
1,168,554	-				+0.3
1,168,573	+				-0.1
1,168,581	-				+0.1
1,168,636	+				+0.6
1,168,641	+				-0.8
1,168,659	-		TX73_005445	0.11	-0.5
1,168,659	-		TX73_005445	0.11	-0.0
1,168,707	+		TX73_005445	0.13	+0.7
1,168,715	-		TX73_005445	0.13	-0.1
1,168,731	+		TX73_005445	0.14	-0.2
1,168,731	+		TX73_005445	0.14	-0.3
1,168,757	+		TX73_005445	0.15	+0.7
1,168,808	-		TX73_005445	0.18	-0.0
1,168,832	-		TX73_005445	0.19	-0.5
1,168,851	+		TX73_005445	0.19	-2.1
1,168,866	+		TX73_005445	0.20	+0.3
1,168,929	+		TX73_005445	0.23	-0.1
1,168,937	-		TX73_005445	0.23	-1.3
1,168,937	-		TX73_005445	0.23	+0.1
1,169,032	-		TX73_005445	0.28	+0.0
1,169,056	-		TX73_005445	0.29	-0.7
1,169,085	+		TX73_005445	0.30	-0.5
1,169,093	-		TX73_005445	0.30	+0.3
1,169,098	-		TX73_005445	0.31	-0.4
1,169,146	+		TX73_005445	0.33	-0.1
1,169,195	-		TX73_005445	0.35	-1.1
1,169,265	+		TX73_005445	0.38	-1.0