Strain Fitness in Rhodopseudomonas palustris CGA009 around TX73_025000

Experiment: Pimelic (C); anaerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Pimelic (C); anaerobic
5,429,850	-				+0.4
5,429,890	-				+0.8
5,429,902	+				+0.3
5,429,914	+				-0.4
5,429,915	+				-0.0
5,429,924	+				+0.9
5,429,943	+				+0.6
5,429,951	-				+1.0
5,429,970	+				+0.2
5,430,015	-				-0.3
5,430,015	-				+0.1
5,430,053	+				-0.0
5,430,083	+				+0.1
5,430,111	-				+0.6
5,430,119	-				-0.3
5,430,189	+				-0.1
5,430,218	+				-0.6
5,430,218	+				-0.0
5,430,218	+				+0.1
5,430,218	+				-0.3
5,430,218	+				+0.3
5,430,218	+				+0.7
5,430,226	-				-0.3
5,430,226	-				-1.0
5,430,231	-				-1.3
5,430,253	+		TX73_024995	0.11	-0.7
5,430,254	-		TX73_024995	0.11	+1.0
5,430,254	-		TX73_024995	0.11	-0.9
5,430,266	+		TX73_024995	0.13	+0.1
5,430,323	+		TX73_024995	0.22	-0.4
5,430,336	+		TX73_024995	0.24	-0.3
5,430,344	-		TX73_024995	0.25	-0.8
5,430,359	+		TX73_024995	0.28	-0.8
5,430,402	-		TX73_024995	0.34	+0.6
5,430,440	+		TX73_024995	0.40	-0.1
5,430,441	+		TX73_024995	0.40	-1.7
5,430,446	+		TX73_024995	0.41	+0.1
5,430,451	+		TX73_024995	0.42	-1.3
5,430,451	+		TX73_024995	0.42	-0.2
5,430,464	-		TX73_024995	0.44	+0.8
5,430,474	-		TX73_024995	0.45	-0.1
5,430,502	-		TX73_024995	0.49	+0.8
5,430,502	-		TX73_024995	0.49	-0.3
5,430,526	+		TX73_024995	0.53	-0.1
5,430,534	+		TX73_024995	0.54	-0.5
5,430,534	-		TX73_024995	0.54	-0.1
5,430,544	-		TX73_024995	0.56	-0.6
5,430,561	-		TX73_024995	0.58	+1.1
5,430,577	+		TX73_024995	0.61	-0.2
5,430,577	+		TX73_024995	0.61	+0.2
5,430,577	+		TX73_024995	0.61	-0.9
5,430,577	+		TX73_024995	0.61	-0.5
5,430,579	-		TX73_024995	0.61	-0.9
5,430,582	+		TX73_024995	0.62	-0.2
5,430,582	+		TX73_024995	0.62	-0.1
5,430,585	-		TX73_024995	0.62	-1.5
5,430,587	+		TX73_024995	0.62	-0.3
5,430,613	-		TX73_024995	0.66	+1.6
5,430,663	+		TX73_024995	0.74	-0.6
5,430,743	+		TX73_024995	0.86	-1.9
5,430,818	+				+0.6
5,430,823	+				-0.6
5,430,823	+				+0.3
5,430,826	-				+0.0
5,430,826	-				-0.6
5,430,834	-				-0.2
5,430,846	+				-0.2
5,430,849	-				+0.3
5,430,849	-				-0.6
5,430,853	-				-0.3
5,430,855	-				-0.5
5,430,867	-				-0.8
5,430,897	-				-0.6
5,430,910	+				-1.2
5,430,918	-				-0.3
5,430,918	-				-1.0
5,430,920	+				-0.6
5,430,936	-				-0.3
5,430,936	-				+0.2
5,430,958	+				-0.3
5,430,971	-				-1.1
5,430,973	+				-0.4
5,430,973	+				-1.0
5,430,973	+				+0.8
5,430,973	+				-2.3
5,430,973	+				-0.8
5,430,981	-				+0.5
5,430,981	-				-0.1
5,431,019	+				-0.6
5,431,046	+				+0.5
5,431,056	+				-0.1
5,431,059	-				-0.1
5,431,061	+				-0.6
5,431,064	-				-0.5
5,431,069	-				-2.2
5,431,069	-				-0.8
5,431,122	-		TX73_025000	0.12	-0.7
5,431,122	-		TX73_025000	0.12	-0.4
5,431,148	+		TX73_025000	0.13	-0.5
5,431,161	+		TX73_025000	0.13	-0.4
5,431,169	-		TX73_025000	0.14	-1.5
5,431,176	+		TX73_025000	0.14	-2.3
5,431,210	+		TX73_025000	0.15	-0.6
5,431,215	+		TX73_025000	0.16	-1.3
5,431,215	-		TX73_025000	0.16	-1.0
5,431,217	+		TX73_025000	0.16	+0.8
5,431,217	+		TX73_025000	0.16	-0.3
5,431,218	-		TX73_025000	0.16	+0.7
5,431,234	+		TX73_025000	0.16	-0.8
5,431,269	+		TX73_025000	0.18	+0.0
5,431,291	+		TX73_025000	0.19	+0.2
5,431,398	-		TX73_025000	0.23	+0.1
5,431,398	-		TX73_025000	0.23	-0.9
5,431,399	+		TX73_025000	0.23	-1.2
5,431,434	+		TX73_025000	0.25	+0.1
5,431,513	+		TX73_025000	0.28	+0.2
5,431,535	+		TX73_025000	0.29	-0.2
5,431,543	-		TX73_025000	0.29	-0.6
5,431,543	-		TX73_025000	0.29	-1.2
5,431,543	-		TX73_025000	0.29	+0.0
5,431,578	+		TX73_025000	0.30	-0.6
5,431,595	-		TX73_025000	0.31	-0.3
5,431,621	+		TX73_025000	0.32	-0.9
5,431,631	+		TX73_025000	0.33	+0.2
5,431,636	+		TX73_025000	0.33	-0.4
5,431,636	+		TX73_025000	0.33	+0.0
5,431,636	+		TX73_025000	0.33	+1.0
5,431,646	-		TX73_025000	0.33	-0.9
5,431,646	-		TX73_025000	0.33	-1.5
5,431,654	-		TX73_025000	0.33	-0.4
5,431,685	-		TX73_025000	0.35	-0.3
5,431,700	+		TX73_025000	0.35	-0.7
5,431,704	+		TX73_025000	0.35	-1.4
5,431,704	+		TX73_025000	0.35	-0.5
5,431,707	-		TX73_025000	0.36	+1.2
5,431,729	-		TX73_025000	0.36	-0.3
5,431,734	-		TX73_025000	0.37	-1.1
5,431,735	+		TX73_025000	0.37	-0.9
5,431,740	+		TX73_025000	0.37	-0.0
5,431,770	+		TX73_025000	0.38	-1.6
5,431,776	-		TX73_025000	0.38	-0.5
5,431,799	-		TX73_025000	0.39	-0.5
5,431,816	-		TX73_025000	0.40	+0.3
5,431,827	+		TX73_025000	0.40	-0.6
5,431,848	-		TX73_025000	0.41	+0.2
5,431,908	+		TX73_025000	0.44	-0.3
5,431,911	-		TX73_025000	0.44	-0.2
5,431,947	+		TX73_025000	0.45	+0.3
5,431,955	-		TX73_025000	0.46	+0.2
5,431,955	-		TX73_025000	0.46	+0.4
5,431,955	-		TX73_025000	0.46	-1.0
5,431,955	-		TX73_025000	0.46	+0.7
5,431,955	-		TX73_025000	0.46	-1.0
5,431,957	-		TX73_025000	0.46	+0.1
5,431,979	-		TX73_025000	0.47	-0.1
5,431,992	+		TX73_025000	0.47	-0.9
5,432,000	-		TX73_025000	0.47	-0.2
5,432,048	+		TX73_025000	0.49	+0.5
5,432,064	-		TX73_025000	0.50	-0.2
5,432,088	+		TX73_025000	0.51	+0.8
5,432,096	-		TX73_025000	0.51	+0.3
5,432,124	-		TX73_025000	0.53	-0.0
5,432,128	+		TX73_025000	0.53	-1.6
5,432,183	-		TX73_025000	0.55	-0.6
5,432,183	-		TX73_025000	0.55	-0.8
5,432,201	+		TX73_025000	0.56	-0.9
5,432,201	+		TX73_025000	0.56	-1.5
5,432,209	-		TX73_025000	0.56	-0.7
5,432,213	+		TX73_025000	0.56	-0.1
5,432,219	-		TX73_025000	0.56	-1.2
5,432,221	-		TX73_025000	0.56	-1.1
5,432,221	-		TX73_025000	0.56	-0.8
5,432,221	-		TX73_025000	0.56	-1.0
5,432,235	-		TX73_025000	0.57	-1.4
5,432,254	-		TX73_025000	0.58	+0.2
5,432,328	+		TX73_025000	0.61	-0.9
5,432,328	+		TX73_025000	0.61	-2.0
5,432,328	+		TX73_025000	0.61	-0.1
5,432,375	-		TX73_025000	0.63	-1.0
5,432,380	-		TX73_025000	0.63	-0.9
5,432,398	-		TX73_025000	0.64	-0.6
5,432,437	+		TX73_025000	0.65	+0.1
5,432,442	-		TX73_025000	0.65	-0.2
5,432,450	+		TX73_025000	0.66	-0.4
5,432,458	-		TX73_025000	0.66	-0.7
5,432,458	-		TX73_025000	0.66	-0.5
5,432,516	+		TX73_025000	0.68	-0.0
5,432,524	+		TX73_025000	0.69	-1.6
5,432,524	+		TX73_025000	0.69	-0.3
5,432,554	+		TX73_025000	0.70	-0.5
5,432,554	+		TX73_025000	0.70	+0.0
5,432,572	+		TX73_025000	0.71	-1.0
5,432,604	-		TX73_025000	0.72	+0.4
5,432,630	+		TX73_025000	0.73	+0.3
5,432,648	-		TX73_025000	0.74	-0.7
5,432,650	+		TX73_025000	0.74	-0.4
5,432,665	+		TX73_025000	0.74	+0.3
5,432,688	+		TX73_025000	0.75	-0.7
5,432,744	+		TX73_025000	0.78	+0.6
5,432,762	+		TX73_025000	0.78	-0.5
5,432,772	+		TX73_025000	0.79	+0.6
5,432,774	+		TX73_025000	0.79	-0.3
5,432,779	+		TX73_025000	0.79	-0.8
5,432,780	-		TX73_025000	0.79	-0.8
5,432,812	-		TX73_025000	0.80	-1.8
5,432,879	+		TX73_025000	0.83	-0.6
5,432,879	+		TX73_025000	0.83	+0.1
5,432,898	+		TX73_025000	0.84	-0.1
5,432,943	-		TX73_025000	0.86	-1.3
5,432,971	-		TX73_025000	0.87	-1.1
5,432,988	+		TX73_025000	0.88	+0.6
5,432,996	-		TX73_025000	0.88	-1.7
5,433,002	+		TX73_025000	0.88	-0.6
5,433,002	+		TX73_025000	0.88	-0.5
5,433,036	+		TX73_025000	0.89	-0.7
5,433,133	-				+0.7
5,433,191	+				-2.5
5,433,194	-				-0.5
5,433,314	+				-0.9
5,433,370	-				+0.2
5,433,370	-				+0.3
5,433,413	+		TX73_025005	0.12	+0.0
5,433,417	-		TX73_025005	0.12	-0.2
5,433,485	-		TX73_025005	0.19	-1.7
5,433,504	-		TX73_025005	0.20	-0.0
5,433,517	+		TX73_025005	0.21	-0.1
5,433,547	-		TX73_025005	0.24	-0.1
5,433,566	-		TX73_025005	0.26	-2.9
5,433,571	-		TX73_025005	0.26	-1.1
5,433,682	+		TX73_025005	0.37	-1.1
5,433,690	-		TX73_025005	0.37	-0.6
5,433,697	+		TX73_025005	0.38	-0.2
5,433,697	+		TX73_025005	0.38	+0.0
5,433,697	+		TX73_025005	0.38	-0.4
5,433,705	-		TX73_025005	0.39	-0.1
5,433,710	+		TX73_025005	0.39	-0.7
5,433,725	+		TX73_025005	0.41	-0.3
5,433,771	+		TX73_025005	0.45	-0.8
5,433,771	+		TX73_025005	0.45	-0.1
5,433,774	-		TX73_025005	0.45	-0.6
5,433,779	-		TX73_025005	0.46	+1.0
5,433,779	-		TX73_025005	0.46	+0.4
5,433,781	+		TX73_025005	0.46	+0.3
5,433,872	-		TX73_025005	0.54	-0.4
5,433,892	-		TX73_025005	0.56	-0.6
5,433,924	-		TX73_025005	0.59	-0.6
5,433,932	+		TX73_025005	0.60	-0.9
5,433,958	+		TX73_025005	0.62	-0.9
5,434,002	+		TX73_025005	0.66	+0.4
5,434,002	+		TX73_025005	0.66	-0.3
5,434,010	-		TX73_025005	0.67	-1.0
5,434,024	-		TX73_025005	0.68	-0.3
5,434,024	-		TX73_025005	0.68	-1.1
5,434,034	-		TX73_025005	0.69	-2.0
5,434,066	-		TX73_025005	0.72	-1.4
5,434,146	+		TX73_025005	0.79	+0.4
5,434,149	-		TX73_025005	0.80	-0.2
5,434,156	+		TX73_025005	0.80	-1.7
5,434,156	+		TX73_025005	0.80	-0.8
5,434,161	+		TX73_025005	0.81	-0.6
5,434,164	-		TX73_025005	0.81	-0.6
5,434,169	-		TX73_025005	0.81	-0.6
5,434,169	-		TX73_025005	0.81	-0.2
5,434,210	+		TX73_025005	0.85	-1.5
5,434,259	-		TX73_025005	0.90	-0.6
5,434,269	-				-1.2